From c29df81fe838aa4e219c7284b665c96bb9c81fee Mon Sep 17 00:00:00 2001
From: Piotr Mankowski <pmanko@uw.edu>
Date: Sun, 25 Sep 2022 21:46:39 -0700
Subject: [PATCH] OpenELIS

---
 docker-compose.yml | 80 +++++++++++++++++++++++++++++++++++++++++++++-
 1 file changed, 79 insertions(+), 1 deletion(-)

diff --git a/docker-compose.yml b/docker-compose.yml
index 15b3f68..c2a50e0 100644
--- a/docker-compose.yml
+++ b/docker-compose.yml
@@ -109,4 +109,82 @@ services:
       - /data/db
     restart: unless-stopped
     networks:
-      - hie
\ No newline at end of file
+      - hie
+
+####
+# OpenELIS
+####
+  certs:
+        container_name: oe-certs 
+        image: ghcr.io/i-tech-uw/certgen:main
+        restart: always
+        environment:
+            - KEYSTORE_PW="kspass"
+            - TRUSTSTORE_PW="tspass"
+        volumes:  
+            - cert-volume:/etc/openelis-global
+          
+  database:
+      container_name: openelisglobal-database 
+      image: postgres:9.5
+      ports:
+          - "15432:5432"
+      restart: always
+      environment:
+          -  POSTGRES_USER=postgres
+          -  POSTGRES_PASSWORD=admin
+          -  POSTGRES_DB=clinlims
+          -  POSTGRES_INITDB_ARGS="--auth-host=md5"
+      volumes:
+            # preserves the database between containers
+            - db-data:/var/lib/postgresql/data                
+            # files here will run on install
+            - openelis-db-data:/docker-entrypoint-initdb.d
+      healthcheck:
+          test: [ "CMD", "pg_isready", "-q", "-d", "clinlims", "-U", "clinlims" ]
+          timeout: 45s
+          interval: 10s
+          retries: 10 
+          
+  oe.openelis.org:
+      container_name: openelisglobal-webapp 
+      image: ghcr.io/i-tech-uw/openelis-global-2:develop    
+      depends_on:
+          - database
+      ports:
+          - "8095:8080"
+          - "8443:8443"
+      restart: always
+      environment:
+          - TZ=Africa/Nairobi
+            # context.xml doesn't seem to be able to pick up environment variables directly, so we are passing them in as CATALINA_OPTS
+          - CATALINA_OPTS= -Ddatasource.url=jdbc:postgresql://database:5432/clinlims -Ddatasource.username=clinlims -Ddatasource.password=clinlims
+      volumes:
+          -  cert-volume:/etc/openelis-global
+          # -  openelis-plugins-data:/var/lib/openelis-global/plugins
+          -  openelis-server-data:/usr/local/tomcat/conf
+          -  openelis-properties-data:/run/secrets
+          
+  fhir.openelis.org:
+      container_name: external-fhir-api
+      image: hapiproject/hapi:v5.5.1
+      # ports:
+          # - "8081:8080"
+        # - "8444:8443"
+      restart: always
+      environment:
+          - hapi.fhir.auto_create_placeholder_reference_targets=true
+          - hapi.fhir.allow_placeholder_references=true
+          - hapi.fhir.allow_external_references=true
+
+  fhir.openelis.org.remote:
+      container_name: openelis-remote-source
+      image: hapiproject/hapi:v5.5.1
+      ports:
+          - "8081:8080"
+        # - "8444:8443"
+      restart: always
+      environment:
+          - hapi.fhir.auto_create_placeholder_reference_targets=true
+          - hapi.fhir.allow_placeholder_references=true   
+          - hapi.fhir.allow_external_references=true