fix(javascript): preserve uncertainty for incomplete runtime captures (#7854)

src/domain/javascript/javascriptRuntimeLoadState.ts

@@ -1,6 +1,7 @@
 import type { ApplicationNode } from "./javascriptApplicationGraphSchemas.js";
 import { uniqueSorted } from "../canonicalOrdering.js";
 import type { ParsedStaticLayer } from "./javascriptRuntimeReconciliationParsing.js";
+import type { ParsedRuntimeCapture } from "./javascriptRuntimeReconciliationCaptureParsing.js";
 import type {
   JavaScriptRuntimeReconciliationItem,
   JavaScriptStaticLoadState,
@@ -20,6 +21,7 @@ export interface StaticLoadStateProjection {
 /** Classify static code presence without claiming bundled module execution. */
 export const classifyStaticLoadStates = (
   layers: readonly ParsedStaticLayer[],
+  captures: readonly ParsedRuntimeCapture[],
   runtimeEntities: readonly RuntimeReconciliationEntity[],
   matches: readonly JavaScriptRuntimeReconciliationItem[],
   options: {
@@ -28,9 +30,15 @@ export const classifyStaticLoadStates = (
 ): StaticLoadStateProjection => {
   const states: JavaScriptStaticLoadState[] = [];
   for (const layer of layers) {
-    const projection = classifyLayer(layer, runtimeEntities, matches, {
-      reconciliationComplete: options.reconciliationComplete,
-    });
+    const projection = classifyLayer(
+      layer,
+      captures,
+      runtimeEntities,
+      matches,
+      {
+        reconciliationComplete: options.reconciliationComplete,
+      },
+    );
     states.push(...projection.states);
   }
   return { states, omittedStates: 0 };
@@ -38,6 +46,7 @@ export const classifyStaticLoadStates = (
 
 const classifyLayer = (
   layer: ParsedStaticLayer,
+  captures: readonly ParsedRuntimeCapture[],
   runtimeEntities: readonly RuntimeReconciliationEntity[],
   matches: readonly JavaScriptRuntimeReconciliationItem[],
   options: {
@@ -70,8 +79,11 @@ const classifyLayer = (
     options.reconciliationComplete &&
     layer.graph.coverage.status === "complete" &&
     scopedEntities.length > 0 &&
-    scopedEntities.every(
-      ({ capture }) => capture.codeInventoryCompleteWithinScope,
+    // An incomplete inventory may have omitted scripts that map into this
+    // layer, even when none of its reported entities map here.
+    captures.every(
+      ({ codeInventoryCompleteWithinScope }) =>
+        codeInventoryCompleteWithinScope,
     );
   const states = nodes.map((node) => {
     const runtimeNodeIds = uniqueSorted(direct.get(node.node_id) ?? []);