refactor(tools): remove redundant limits and acknowledgements

docs/javascript-runtime-reconciliation.md

@@ -156,14 +156,12 @@ silently equated with the generated bytes observed by CDP.
 
 ## Bounds and determinism
 
-Inputs allow up to eight static layers and 32 passive captures. Default output
-bounds retain 10,000 runtime entities, 20,000 reconciliation records, and
-20,000 static load states; each caller-visible maximum is 50,000. At least one
-target node per capture must fit. The combined graph also preserves the JAG v1
-caps of 1,000 roots, 100,000 nodes, 200,000 edges, and 64 observations per
-node. Reaching a limit reports exact omitted counts for runtime entities,
-reconciliation items, static load states, and merged graph items, plus
-`coverage.status: truncated`.
+Inputs allow up to eight static layers and 32 passive captures. Runtime entity,
+reconciliation item, and static load-state projections have caller-visible
+limits and report omitted counts when reached. The merged application graph
+retains all selected roots, nodes, edges, and observations from those inputs;
+it adds no second aggregate prefix cap. Reaching an input projection limit
+reports exact omitted counts and `coverage.status: truncated`.
 
 Layers, captures, nodes, edges, matches, and evidence links are canonically
 ordered. Repeating the same verified Evidence, mappings, and limits produces