fix(javascript): preserve runtime path bytes and Electron ownership (#4941)

* fix(javascript): preserve literal percent runtime paths

* fix(javascript): ignore resolve prefixes before the final anchor

* fix(electron): retain application roots for loadFile declarations

* fix(electron): resolve loadFile from enclosing application package

* fix(electron): retain outer application root across package scopes

* fix(electron): derive application ownership from inventoried packages

* fix(electron): retain resolved package entrypoint ownership

* fix(electron): preserve competing application ownership

* fix(electron): retain invalid and omitted runtime ownership

* fix(electron): preserve omitted module ownership and runtime paths

* fix(electron): preserve proven roots before confining page paths

* fix(electron): retain possible owners behind missing imports

* fix(electron): distinguish absent imports and owned page candidates

* fix(electron): keep unavailable JSON out of owner gaps

* fix(electron): retain exact loader formats and default entry status

* fix(electron): retain unavailable entrypoint ownership candidates

* test(ghidra): preserve Windows Node probe prerequisites

* test(ghidra): assert cancellation during profile shutdown

* fix(electron): separate examined imports from frontend ownership

* fix(electron): retain unavailable directory entrypoint owners

* test(jeb): retain Linux ownership prerequisite in isolation

* fix(javascript): retain unchecked loader ownership and literal main paths

* fix(javascript): preserve runtime paths and call-site module aliases

* fix(javascript): bound module alias traversal and preserve projections

* fix(javascript): retain host module and nested artifact path boundaries

* fix(javascript): preserve ESM and archive module loader provenance

* test(javascript): distinguish unmapped containers from missing exports

* fix: retain default module aliases and Electron builtin imports

* fix: preserve host file URL and inward ASAR ownership

* fix: preserve CommonJS file URL classification in CI fixtures

* fix: retain bound module loaders and Windows entrypoint uncertainty

* fix: retain ASAR uncertainty and invalidate changed Electron app roots

* fix(javascript): retain ownership uncertainty across loader boundaries

* fix(javascript): preserve loader sources and bound alias queries

* fix(javascript): retain destructured loader sources

* fix(javascript): preserve loader uncertainty at resolution boundaries

* fix(javascript): preserve callable and package launch ownership

* fix(javascript): preserve captured values across member reads

* test(process): assert tagged filesystem cancellation failures

* fix(javascript): preserve inventory bases and invocation read timing

* fix(javascript): preserve ownership across indirect and unread loads

* test(javascript): order fixture directory creation on Windows

* test(javascript): share ordered filesystem fixture writer

* fix(javascript): unify loader provenance and package validation

* fix(javascript): preserve captured Node require loader values

* fix(javascript): preserve loader invocation authority

* fix(javascript): verify generic loader invocation authority

* fix(javascript): preserve conditional loader method alternatives

* fix(javascript): require proven factories for source association

* fix(javascript): honor replaced Electron app path setters

* fix(javascript): prove path and assignment source ownership

* fix(javascript): retain native delegate eligibility through shared writes

* fix(process): settle stale baseline errors after confirmed absence

* fix(javascript): preserve assignment and path boundary evidence

* fix(javascript): prove source-directory resolve anchors

* fix: preserve application path provenance and portable schemas

* fix(javascript): retain CommonJS exported setter effects

* fix: isolate Linux identity observations and retain native module exports

* fix(javascript): preserve published app and helper provenance

* fix(javascript): normalize typed stores and native path fixtures

tests/support/cli/javascriptApplication.ts

@@ -26,12 +26,26 @@ export const analyzeJavaScriptDirectory = async (
   surface: "CLI" | "stdio MCP",
   cli: TestCli,
   root: string,
-  mcpCall?: Awaited<ReturnType<typeof connectLocalToolsMcp>>["call"],
+  {
+    sourcePaths = [],
+    mcpCall,
+  }: {
+    readonly sourcePaths?: readonly string[];
+    readonly mcpCall?:
+      | Awaited<ReturnType<typeof connectLocalToolsMcp>>["call"]
+      | undefined;
+  } = {},
 ) => {
   let document: unknown;
   if (surface === "CLI") {
     const response = await cli.run({
-      arguments: ["analyze-javascript-application", root, "--format", "json"],
+      arguments: [
+        "analyze-javascript-application",
+        root,
+        ...sourcePaths.flatMap((path) => ["--source-path", path]),
+        "--format",
+        "json",
+      ],
       environment: { REA_LOG_LEVEL: "silent" },
     });
     expect(response.exitCode, response.stderr).toBe(0);
@@ -41,6 +55,7 @@ export const analyzeJavaScriptDirectory = async (
     const response = await call("analyze_javascript_application", {
       input_path: root,
       format: "directory",
+      ...(sourcePaths.length === 0 ? {} : { source_paths: sourcePaths }),
     });
     expect(response.isError, JSON.stringify(response)).not.toBe(true);
     document = response.structuredContent;