Commit Graph
27 Commits
Author SHA1 Message Date
+27 fb453f2930 fix(mcp): support retained pseudocode summaries and paging (#5046)
* refactor(mcp): share official tool evidence registration

Route official tools through registerEvidenceTools and remove the duplicate
execution, progress, and Evidence delivery pipeline.

Preserve relationship coverage in the shared path and reuse the existing
source Evidence recording helper.

Validation: typecheck and 29 focused MCP tests passed.
Real native providers were not exercised.

* fix(mcp): support retained pseudocode summaries and paging

Allow procedure_pseudo_code to return an opt-in summary linked to its
retained complete Evidence. Extend inspect_analysis_view to page the
original pseudocode without repeating provider analysis.

Preserve default complete output and exclude delivery detail from
provider parameters and source Evidence identity.

Add regression coverage for large results, Unicode, null and empty
output, missing retention, transport-overflow recovery, and CLI paging.

Validation: 178 focused tests, build, check, docs:check, and test discovery
passed. Real stdio simulation reconstructed 98,000 code units exactly.
Real Ghidra, iTunes, and Claude Code verification remains unavailable.

Fixes #5032

* test(mcp): scope pseudocode contract lookup to official tools

* feat(desktop): capture and export apps installed from a downloaded .deb (#8954)

* feat(desktop): capture a Linux desktop application in use

Add `capture-desktop-application`, a CLI-only, Linux and X11 capture that
launches an installed desktop application, watches it while it is used and
writes capture Evidence plus SHA-256 addressed content:

- inventory: desktop entry, launch command, executable, package and its
  apt sources (or snap, flatpak, AppImage), Electron markers and candidate
  state directories;
- session: the launched process tree, client windows from xprop with the
  first application window time and a window match, and files held open;
- state: a stat walk of the home directory before launch, at checkpoints
  read from stdin, at stop and after exit, with created, modified, deleted
  and retyped paths and the content of changed files and state directories.

It refuses non-Linux hosts, missing DISPLAY or xprop, a non-empty output
folder and an application whose window is already open, and signals only
processes it started.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): own launched processes, confirm walk coverage and keep cancelled captures

- Launch through the owned provider path with a run token; release with
  SIGTERM, then the token-verified group cleanup, after every session.
  Processes without the token are never signalled; each records whether it
  carries it, and the session records whether cleanup was verified.
- Report creations and deletions only where a walk listed the nearest
  existing directory; count the rest as unconfirmed.
- Retain a file only when it is still the walked version, through owned
  no-follow reads; charge the budget only for new content; create files
  exclusively in a private output folder owned by the caller.
- Walk content roots outside the home directory, compare paths in their
  physical spelling, and run executables from the caller's directory.
- Refuse when the window list cannot be read, re-evaluate window ownership
  each sample, handle one queued request per sample with a bounded stdin
  queue, and write the capture with end reason `cancelled` on interruption.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep owned cleanup failures and fresh digests

- Allow a capture cancelled before any requested checkpoint to hold only the
  baseline.
- Retry an incomplete stop once; if cleanup is still unverified, write the
  capture and fail with the run token and process group as cleanup
  resources.
- Classify path changes after a walk (ENOTDIR and other selected-file
  errors) as changed_since_walk instead of failing the capture.
- Treat a non-directory ancestor as proof that nothing existed beneath it.
- Report a before digest only for the file version it was read from.
- Derive stderr_truncated from stderr's own byte counts.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* wip(desktop): state view over a capture folder

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep failed file-handle closes owned for retry

Content reads pass retainFailedClose, so a handle whose close fails stays
owned by the content store; the capture retries those closes after it is
written and fails with the output folder as the cleanup resource if one
still cannot be closed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): read a captured application's state

Add inspect-desktop-application-state, a CLI command that reads a capture
folder into the application's state: every retained or changed file with
its role and reasons, a typed JSON view of each version (SQLite through the
shared worker, dconf through a private dconf dump, JSON, XML, key files,
text) and the kinds of change between versions (lines, values, keys, rows).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): report process and handle cleanup failures together

When both the launched processes and a retained file's handle remain
unresolved after the capture is written, one cleanup error now lists both
reasons and both resource sets.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): export a captured application as an agentenv computer app

Add export-desktop-application, which writes an agentenv bundle with one
computer_app environment from a capture folder and its state view: the
apt package, a boot launch matched on the captured window class with a
window ready check, owned paths from the state roles, a seed of the
baseline files, data hooks that call agentenv's add/get/reset helpers
with a typed JSON view on get, a skill, a README and a deploy smoke task.
The desktop CLI commands now load their services lazily.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep state views faithful to the capture

- Read key files, XML attributes, dconf groups and SQLite tables into
  dictionaries without inherited properties, so captured keys such as
  __proto__ stay data.
- Version databases with their write-ahead log as of each checkpoint, and
  stage only digest-verified bytes for the SQLite and dconf readers.
- Detect the format per version, report format changes, keep JSON null and
  empty containers as values, keep XML text and preserved whitespace, and
  mark truncated views (including XML depth) and comparisons of them.
- Number versions and changes by checkpoint index, decide baseline
  presence from the captured type, and keep tagged SQLite integers, text
  bytes and blobs distinct.
- Carry the capture's limitations and omitted content forward, match state
  directories by their home path, index changes once per capture, keep
  failed handle closes owned, and finish the CLI through the shared owner.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep coverage, logs and handles honest in the state view

- Read coverage flags only from formats whose readers write them, so JSON
  fields named truncated stay data.
- Fail a SQLite version whose write-ahead log existed but was not retained
  or does not match its digest, instead of reading the database alone.
- Close retained content on every exit, including cancellation, and report
  a close that still fails together with the primary failure.
- Finish the CLI with the canonical operation name.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): export only what the computer can install and seed

- Refuse packages not from the Ubuntu 24.04 archive, since the computer
  installs by name from that archive.
- Start the launch command in the captured working directory.
- Respell the home path only in files the state view read as text.
- Report files that were not retained instead of dropping them silently.
- Load captured dconf keys for apps that own no files.
- Keep home-level files as owned paths; rename reserved Python class names.
- Mark truncated SQLite and text views in the class's get view, and read
  file types the way the state view does.
- Release the output tree through a resource scope, and read seeds through
  an owner closed on every exit.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep staged folders owned, symlinked state roots and XML values

- Stage database bytes in a private runtime root released through a
  resource scope, so a failed removal keeps its owner and is reported with
  the read's outcome.
- Report cleanup facts and owners from desktop failures instead of
  wrapping them as a plain adapter error.
- Record the state directories as walked, in their physical spelling, and
  match roles against both spellings, so files in a symlinked state
  directory are not mistaken for selected documents.
- Keep whitespace-only XML leaf values; drop only formatting between
  elements.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): read XML in the exported app the way the state view does

Keep whitespace-only leaf values and xml:space="preserve" text in the
generated get view; drop only formatting between elements.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): release retained handles with their owners, read older captures

- Release retained-content handles whose close failed through a resource
  scope on every exit; a release that fails again reports the exact handle
  owners. A read that finished keeps its bytes when only its close failed.
- Accept captures written before state directories were recorded, and say
  in the state view's limitations that symlinked state directories may be
  misclassed for them.
- Compute each XML element's whitespace context once instead of scanning
  siblings for every text run.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): boot without the working folder, bound XML, accept mirrors

- Try the captured working directory only when an argument is relative,
  and start the app even when that folder is missing.
- Cut the generated XML view at REA's node and depth limits, and keep one
  unreadable file from failing data/get.
- Accept Ubuntu 24.04 mirrors, not only the canonical hosts; PPAs and
  other repositories are still refused.
- Read seeds through the retained-content owner's new signature.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): state view review round

- Stage a retained -journal beside its database so the SQLite worker
  accepts an inactive journal and refuses a hot one; a -wal or -journal
  that existed but was not retained (including one omitted at the
  baseline) makes the version unreadable.
- Keep tables that read when another fails, and let cancellation and
  unfinished cleanup propagate instead of becoming view errors.
- Read text as a key file only when every line parses as one.
- Rank a file named in a window title or selected by the caller as a
  document even when the application holds it open; match titles on
  file-name boundaries; leave the display name out of dconf matching.
- Bound JSON and key file views (4 MiB, 500 levels, exact numbers) and
  report too-large, missing and altered retained content separately.
- Add no version or change while a database stays absent.
- Read staged databases in place instead of copying them again.
- Give Evidence the same limitations as the result.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): export review round

- Load captured dconf keys without D-Bus: install dconf-cli, compile the
  existing and captured key files into the user database, and warn on
  failure instead of stopping the server.
- Start relative-argument launches in the captured working directory,
  the home included, since the framework launches from the app folder;
  respell the home itself and option values under it.
- Read views in a thread, skip files over 64 MiB, align the generated
  readers with the state view's, and close SQLite connections.
- Never own the home or a shared base folder; map a symlinked state
  directory's files back to their home spelling.
- Report omitted files and unretained opened folders.
- Name the module so it cannot shadow another, and keep the class off
  the module's own names; derive names the bundle check accepts.
- Write seeds as they are read, and remove an unpublished bundle on
  failure.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): capture review round

- Ask the launch process group and token carriers to exit before
  killing them, on errors too; report incomplete cleanup with its facts.
- Count descendants of the launch as started by the capture even when
  their environment cannot be read; treat a reused pid as a new process.
- Follow symlinked desktop entries; name a flatpak's state after its
  application id; match flatpak windows by name only.
- Stop on end of input; refuse empty, duplicate and reserved checkpoint
  names; require whitespace after the checkpoint keyword.
- Stay on each walk root's device, and never walk or retain `/` or a
  directory containing the home; say so in the limitations.
- Refuse a window manager that does not publish _NET_CLIENT_LIST.
- Remove retained content when a capture fails before it is written.
- Skip reading a file larger than the remaining content budget.
- Record apt's archive origin for each package source.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): read an unset client list as no windows when supported

xfwm4 leaves _NET_CLIENT_LIST unset while it manages no windows, so the
capture refused an ordinary desktop with nothing open. Read
_NET_SUPPORTED with the list: an unset list means no windows when the
window manager supports it, and the capture is refused only when it
does not. `xprop`'s "no such atom" output now reads as unset too.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): accept packages by apt's archive origin

Accept a package source when apt reports its origin as Ubuntu for a
noble suite, so mirrors count and PPAs or other repositories that merely
have "ubuntu" in their URL do not. Captures made before origins were
recorded fall back to Canonical's own archive hosts. Seed reads report
why retained content could not be used.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): capture and export apps from vendor apt repositories

A closed-source app installed from its vendor's apt repository, such as
Typora, can now be captured and exported as a computer app.

- The capture records each non-Ubuntu repository listing the installed
  version (uri, suite, components from apt's sources files, one-line or
  deb822) and the key that signs it: the signed-by key, or the trusted
  key that gpgv shows verifies the repository's signed index. The key
  is retained with the capture.
- The capture records the packages owning the libraries the executable
  loads (DT_NEEDED with RUNPATH and the linker cache, through REA's ELF
  readers), since a vendor package may not depend on them.
- The export declares a verified vendor repository as an AptSource with
  its key, installs a vendor package's library packages, and adds
  --no-sandbox to an Electron app's launch, since a container denies
  Chromium's sandbox.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): report a locked database at once in data/get

A database the running app holds locked made each data/get wait sqlite's
five-second busy timeout before reporting it. Record the Typora run in an
agentenv computer in the verification.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* perf(desktop): detect key files without splitting the whole text

Read lines one at a time and stop at the first that a key file view
would drop, instead of splitting a file of up to 64 MiB into arrays
before its format is known.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep symlinked homes and state folders under the home in exports

- Respell a path under its state folder's logical spelling only when that
  spelling is under the captured home, so a symlinked HOME keeps its
  files; pair walked and logical state folders only when the capture
  lists the same number, and match the innermost folder first.
- When two files map to one home path, keep the one present before the
  capture and name the other in the limitations.
- Read key files in the generated data/get with the state view's rule,
  checked against it by running the helper under python3.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): end captures on zombies and keep cleanup owners

- A zombie or dead process no longer keeps the session open.
- Remove only the partial capture file this run created.
- Keep the exact owners of handles and processes whose cleanup failed on
  the returned error, so a retry can release them; test the published
  capture's cleanup-failure branch with mixed outcomes and retries.
- Release the application once even when the exit checkpoint fails.
- A cancellation before the capture is written removes what it retained.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): vendor package review round

- Match apt sources through `apt-get indextargets`, which covers flat `./`
  and `/` suites and gives each release file and sources entry.
- Accept a key whose signature verifies even when the release carries
  another signature without a key here; keep only the verifying key from
  a keyring holding several (OpenPGP packet splitter).
- Install the package from its repository's release (`name/<release>`),
  declare one source per URI and suite, support only the capture host's
  architecture, and refuse Ubuntu Pro repositories.
- List only library packages the computer can install; walk libraries only
  for vendor installs, with RPATH inherited as ld.so does, normalized
  paths, and DT_NEEDED bounded while reading.
- Put --no-sandbox after the program an env wrapper launches; keep the
  gpgv folder's owner when its removal fails; respect --max-file-bytes for
  keys; wait 0.25 s on a busy SQLite database in data/get.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): keep the vendor spec's gpgv command on one line

A code span broken across lines left `<binary keyring>` for VitePress to
read as an unclosed HTML tag, so the docs build failed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): add a validated task to exported desktop applications

Each capture can now yield one agentenv task in its exported bundle. An
agent writes the task (a prompt plus declarative checks over the app's
data/get views); REA validates it and stays model-free.

- `describe-desktop-application-task` summarises a capture's net change
  per file (role, format, views before and after) and drafts checks.
- Checks: file presence, lines present/absent/counted, JSON-pointer values,
  SQLite rows and counts. REA keeps a task only if a check fails on the
  seed and every check passes on the captured end state; a file that was
  not retained at the baseline counts as absent, as the computer starts.
- `export-desktop-application --task` writes tasks/NAME.json (deploy,
  agent, skills, recording, prompt, verifier), a compiled verify.py that
  reads data/get, and an eval. A boundary test runs the verifier under
  python3 and checks it agrees with REA's evaluator on every check kind.
- Docs, spec and skill guidance, with the solve-rate recipe.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(desktop): keep the seed test in its own block

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record the task verifier driven in an agentenv computer

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record the Typora task run in an agentenv computer

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep task checks bounded, complete and attributable

- line_count counts lines holding a substring (contains) instead of
  matching a regular expression, which could stall the verifier on
  agent-written text and read differently in Python.
- value_equals of a whole object or array is undecided on a truncated
  view.
- The draft keeps a database whose rows changed under an unchanged hash,
  and a file whose truncated views match while it changed.
- A task file that cannot be read keeps the reader's detail, and a failed
  cleanup keeps the read failure as its primary.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): leave a file with one version out of the task draft

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): update the task verification's test counts

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record the task solve rate with Claude Code and Sonnet 5.5

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(desktop): capture and export apps installed from a downloaded .deb

capture-desktop-application --package-file reads the file's control fields
with dpkg-deb and records its SHA-256, size and dependencies when it holds the
installed package; the file itself is never kept. The library walk now also
runs for local installs.

export-desktop-application --package-url declares agentenv's
Download(url, sha256) for that file, its dependencies and library packages as
apt packages, and a run script that installs it with dpkg.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): seed app-named dotfiles and respell UTF-16 seeds

The capture now treats dotfiles in the home named after the application
(.varicad-cfg.ini, .notesrc) as state roots, so a file the app only reads
during the capture is still seeded. The exported seeding respells the
captured home in UTF-16 text files with a byte-order mark, keeping the mark.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): hold readiness until the app's own window shows

An exported app is ready only once a window of its class that the taskbar
lists is shown, so a splash screen of the class, which skips the taskbar, no
longer counts as the app being up.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(desktop): record VariCAD captured, exported and run in an agentenv computer

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep exported views strict JSON for infinite and inexact numbers

The exported data/get spells infinite and negative-zero SQLite reals as REA's
SQLite reader does ("Infinity", "-Infinity", "-0"), and refuses a JSON file
holding a number that reading would change (1e999, integers past 2^53, -0,
rounded fractions) with the state view's own error, instead of a view with
an infinity in it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep package-file facts tied to one file and URLs unechoed

- A --package-url refusal never repeats the URL, and credentials are checked
  before the scheme.
- The package file's identity must hold between dpkg-deb's read and the hash.
- A failed close keeps its cleanup owner even when the capture is cancelled.
- Readiness also ignores windows typed as splash screens.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): record database logs and keep state changes distinct

- A selected path that is not a directory brings its -wal and -journal as
  content roots, so the capture records whether they exist and retains them.
- The state view treats a file as absent only under recorded content roots
  and refuses a database whose log presence is unknown.
- JSON changes list containers too, so an array that becomes an object with
  the same members is a change.
- Key file entries escape the key as a JSON pointer segment, so [a/b] c and
  [a] b/c stay apart.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep watching through unread samples and late workers

- An unreadable window list is unknown, not zero windows, and is named in
  the limitations.
- Before ending the session, live run-token carriers no parent link reached
  are tracked; an unreadable process table leaves the exit unknown.
- An env prefix's assignments find the program and name its XDG folders.
- flatpak run options that take a value are skipped with it, -- is honoured
  and a /arch/branch suffix is dropped from the id.
- State directories include the entry's full id.
- Path options refuse empty values; roots count toward the entry limit.
- A capture file whose close failed stays owned and is retried on discard.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): bound apt sources, keep older captures and cleanup owners

- Sources files parse into one stanza per line or deb822 paragraph with its
  URIs and suites kept as lists, so no URI x suite product is built.
- Repository architectures and release are optional, so captures written
  before they were recorded parse; the export treats them as unrestricted
  and unknown.
- Library sources are matched against every index of a declared
  repository's URI, suite and components.
- Two failures side by side keep both causes and both cleanup owners, and a
  host file whose close fails reports a lease on its handle.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): match escaped key file entries and suggest containers through members

- The draft's key file lookup uses the state view's escaped `group/key`, so a
  key holding `/` or `~` still gets its suggestion.
- JSON and XML changes now list containers too; the draft suggests an added
  or removed container through its listed members, and a container only
  when none of its members is listed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): read relative PATH entries from the launch folder

A program, or an empty or relative PATH entry, is resolved from the folder the
program starts in, as the launch does, so `env PATH=. app` with the entry's
Path still finds the app.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* perf(desktop): compare JSON views on one shared path

JSON and XML changes are found by walking both trees with one shared pointer
path, building a pointer only for a listed value, so memory follows depth
rather than every container's full path. A pointer over 4096 characters is
counted but not listed. A 256-level document with 4000-character keys went
from about 251 MiB of heap to under 1 MiB.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep JSON Lines as text in the exported reader

The exported reader parses the whole text before an inexact number makes it
JSON with an error, so JSON Lines with an integer above 2^53 stay text as in
REA. Over-long integer spellings are unsafe without converting them. The
guide no longer claims large integers keep their value.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep the state-path help free of dash-led words

The CLI alias check reads `-wal` and `-journal` in help text as short flags,
so the help names the write-ahead log and rollback journal instead.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): never record or export apt source credentials

- Source URIs lose any user name and password as they are parsed, the way apt
  splits them, and so do index-target URIs and descriptions and the sources
  apt-cache policy lists, so matching works whether or not apt prints them.
- A repository whose entry held credentials is marked
  `uri_credentials_removed`, and the export refuses it, or an older capture
  whose URI still holds them, with a reason that names no URL.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): look programs up without normalizing their paths

Program paths and PATH entries are joined rather than resolved, so `..` after
a symbolic link means what it means to the launch. The lookup moves to its own
module.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): note inexact JSON numbers with a flag, not a list

The exported reader only needs to know whether any number was inexact, so it
keeps a boolean instead of every rejected spelling.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): refuse older captures that still hold apt credentials

A capture written before credentials were removed counted the credentialed
repository's libraries as installable, so the export refuses it whole and asks
for a new capture rather than declaring packages no source offers. Recorded
policy sources are redacted in export messages too.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(desktop): keep the credential fixture on an example host

A login on a real host reads as a secret to the commit scanner, so the older
capture's fixture uses apt.example.com like the other credential tests.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): tidy looked-up paths and search relative entries only for env

Empty and `.` segments are dropped from a looked-up program path, which keeps
`/snap/bin/` entries recognisable as snaps, while `..` is still left for the
kernel. Relative and empty PATH entries are searched only in the PATH an `env`
prefix sets, which travels with the exported launch; the host's own PATH does
not.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): keep excluded and unwalked database logs unknown

The capture records the paths every walk left out, and the state view treats
a log as absent only under content roots the baseline walked completely and
outside those exclusions, so an excluded or unvisited log leaves the database
unread rather than read without it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): judge JSON numbers after duplicate keys settle

The exported reader marks an inexact number instead of flagging it during the
parse, then looks for marks in the parsed value, so a number a later duplicate
key overwrote no longer refuses the file, as in REA.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): redact a repository's policy source when it names it

An older capture whose policy source matched no sources entry kept that text
whole, and the export named the repository by it; the export now names it
without any user name or password.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): never signal the launch group on unknown membership

When the current read cannot observe a carrier's process group, the carrier
is signalled on its own instead of letting an older process-table row grant
a group-wide SIGTERM.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): look programs up in the launch's order and refuse host-relative finds

The lookup searches PATH as the launch does, an empty entry meaning the
launch folder, so inspection and launch name the same program. A program found
only through a relative or empty entry of the host's own PATH is refused,
since the exported computer would not have it; an env prefix's PATH travels
with the command.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): count unchecked paths and keep logs behind them unknown

Each walk counts the paths it could not stat and the directories on another
device it did not enter, and the checkpoint records it as `unchecked_paths`.
The state view treats a log as absent only when the baseline left nothing
unchecked, so a log whose stat failed stays unknown.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* perf(desktop): scan parsed JSON with one iterator per level

The check for marked numbers walks the parsed value with an iterator per
nesting level instead of copying each container's children; a million-entry
array went from about 15.7 MiB to 8.1 MiB of peak traced memory.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(desktop): start a relative program from its captured folder

An exported launch whose program path is relative, such as `./app` from an
entry's Path, now changes to the captured working directory first, as it
already did for relative arguments.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(electron): reject non-directory scenario roots before launch (#8967)

* fix(contracts): align managed example MethodDef scope (#8966)

* docs(debugger): document configurable session limits (#8963)

* docs(debugger): document configurable session limits

* docs(debugger): clarify GDB control command deadlines

* docs(debugger): qualify configurable GDB output budget

* docs(debugger): clarify one-shot CLI settings scope

* docs(debugger): preserve repository line endings

* docs(testing): explain npm launcher selection in PowerShell (#8962)

* docs(mcp): explain PowerShell launch environment scope (#8961)

* docs(mcp): explain PowerShell launch environment scope

* docs(mcp): qualify saved setup selections and OpenCode environment

* fix(native): declare temporary filesystem writes for inspect_macho (#8959)

* fix(environment): retain ID ordering with missing clocks (#8957)

* fix(environment): retain ID ordering with missing clocks

* fix(environment): compare known creation clocks across gaps

---------

Co-authored-by: hhang <169027046+xu91102@users.noreply.github.com>

* fix(gpu): distinguish ELF string scan limits from corruption (#8955)

Co-authored-by: hhang <169027046+xu91102@users.noreply.github.com>

* fix(setup): replace the fixed Hopper download deadline with a stall timeout (#7150)

* fix(setup): replace the fixed Hopper download deadline with a stall timeout

Hopper package downloads aborted after a fixed 120 s, which was also the
largest deadline the download owner accepted. The current 32 MB Linux
package needs about 132 s at the reporter's sustained 245 KB/s, so setup
could never finish on that connection, and the timeout surfaced only as
Node's generic abort message.

Abort a download when no response bytes arrive for 30 s, or when it
outlives a 15-minute overall bound, with a tagged
HopperDownloadTimeoutError that names the URL, the limit reached and the
bytes received. Linux and macOS setup already relay a thrown download
error's message; the Linux publisher now keeps it for release metadata
and public key fetches instead of a generic verification failure.
Metadata and key fetches keep their 10 s bound.

Refs #7077

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(setup): keep the macOS release feed on the metadata limit

The stall-timeout change left the macOS release feed fetch on the
package download bounds. That fetch could then wait up to 15 minutes
instead of the 120 s it had, while the installation guide says release
metadata keeps a 10 s limit. Only the Linux publisher owned that limit.

Move the 10 s metadata limit into HopperDownload.ts beside the package
bounds. The Linux feed and key fetches use it, and the macOS installer
now passes it for its feed fetch through the installer host.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(cli): parse environment-serve --port and --host like rea mcp --http (#7092)

* fix(cli): parse environment-serve --port and --host like rea mcp --http

environment-serve declared --port as a number, so incur coerced the flag text with Number(): an empty --port= bound an ephemeral port instead of failing, and 0x1F90 or 1e3 were reinterpreted. --host accepted whitespace. docs/cli.md says these flags resolve like rea mcp --http, which accepts only decimal port text and a non-empty trimmed host. The flags now use the same rules and are refused before binding.

* refactor(cli): reuse the shared MCP listener port and host schemas

* fix(adb): separate unresolvable paths and host capacity in adb spawn failures (#6188)

* fix(adb): name unexecutable adb paths in readiness refusals

When REA_ADB_PATH or the PATH-resolved adb is a directory or a file the
host refuses to execute, the version probe fails at spawn with EACCES or
EPERM. That fell through to the generic "did not report a usable version"
refusal, which named neither the path nor the cause.

Classify those spawn errors as binary_not_executable (provider rejection
executable_missing), name the selected path and errno, and give
remediation for the environment, PATH and host-policy cases. The generic
fallback now names the selected path too.

Fixes #5689

* fix(process): admit synchronous spawn errors as captured failures

Node throws spawn errors other than EACCES, EAGAIN, EMFILE, ENFILE and
ENOENT synchronously from execFile. execFileBytes called execFile inside
its Promise executor, so ENOTDIR or EPERM became a rejection without
capture fields and execFileOutputFailure returned undefined. Consumers
that classify by failure code, such as the adb version probe, could not
see the code, which left the adb EPERM branch unreachable.

Catch synchronous spawn errno errors at the capture boundary and attach
the same empty capture an asynchronous spawn failure carries. Argument
validation errors stay unadmitted.

The adb version probe now reports an ENOTDIR selected path, such as a
REA_ADB_PATH whose parent is a regular file, as a missing binary with
the filesystem error code instead of the generic version refusal.

* fix(process): expose spawn failures from the capture owner

execFileBytes knows when a command never started, but
ExecFileOutputFailure did not say so, so consumers reread raw syscall
and code fields and disagreed. Mark both the synchronous throw and an
asynchronous `spawn <path>` error with `spawnFailed: true`, and set
`path` on the synchronous error to match the asynchronous shape.
Argument validation errors stay unadmitted.

Consumers now use the owner field:

- inspectAdbClient never reports a spawn errno as `exit_code`. ENOENT,
  ENOTDIR, ELOOP and ENAMETOOLONG are `binary_missing`; EACCES and EPERM
  stay `binary_not_executable`; any other spawn errno, such as EINVAL,
  is `binary_not_executable` with a path-naming "could not be started"
  message. Each records `filesystem_error` and `path_source`. EACCES
  remediation also names parent directory search permission, and EPERM
  remediation no longer names host policy as the only cause.
- DarwinProcessRunTokenReader tags every not-started compiler as
  `spawn_failed`, not only ENOENT. EACCES, EPERM and ENOTDIR were
  previously `failed`.
- NativeDmgArtifactReader uses one not-started rule for both
  `processNotStarted` (previously `spawn ` only, so synchronous errors
  were missed) and the ENOENT unavailable/io split (previously any
  `spawn` prefix). Its fake hosts now reject with real execFileOutput
  spawn failures.

* fix(process): classify spawn failures consistently across consumers

Admit synchronous and asynchronous spawn errnos through one helper that
requires an errno and a `spawn` or `spawn <path>` syscall. The
synchronous shape now also gains `spawnargs`, so both shapes match.

Use the owner's `spawnFailed` fact in the remaining consumers:

- inspectAdbClient reports exhausted host capacity (EAGAIN, EMFILE,
  ENFILE, ENOMEM) as a host failure to retry and no longer tells the
  caller to change REA_ADB_PATH. Path-resolution errnos come from a
  predicate the filesystem owner exports.
- runAdbCapture says adb could not be started instead of claiming an
  exit code for a process that never ran.
- The Darwin compiler probe words every spawn_failed outcome as a start
  failure, not a compilation failure.
- Asset catalog inspection treats any assetutil that never started as
  unavailable, not only ENOENT.

* fix(process): report host spawn capacity as a retryable constraint

Spawn errnos that report exhausted host capacity (EAGAIN, EMFILE, ENFILE,
ENOMEM) were classified by adb readiness alone. assetutil reported them as
an unavailable tool, which marked inspect_asset_catalog unavailable in the
session, and adb commands reported them as protocol failures.

Classify them once in the process capture owner and report a retryable
capacity constraint with recovery advice from assetutil and adb commands.

* docs(adb): describe host capacity failures from device operations

* fix(adb): report exhausted host spawn capacity as runtime unavailability

A host that cannot start adb for lack of process, memory or descriptor
capacity is not a configuration problem. Give it its own failure code and
map it to the runtime_unavailable provider rejection instead of
not_configured.

* fix(adb): report probe-time host capacity as a retryable constraint

A device operation whose adb version probe could not start for lack of host
capacity was refused as capability_unavailable without retryable. It now
reports the same retryable capacity constraint as a later adb command.

* fix(adb): keep the selected adb path in probe-time capacity errors

The retryable capacity constraint raised at the version probe dropped the
selected_binary and path_source diagnostics the refusal used to carry.

* refactor(adb): keep the spawn-failure fact to adb consumers

Restore the DMG reader, Darwin compiler probe and assetutil to main. The
capture owner still marks a never-started command, including the spawn
errors Node throws synchronously, and only the adb readiness probe and
adb commands read that fact.

* test(adb): assert spawn-failure facts instead of refusal wording

The new adb tests compared complete refusal sentences and banned an old
phrase. They now check the errno, selected path, path source and the
owner's spawn-failure marker, so wording edits do not break them.

* fix(adb): own one host-capacity remediation and cover the spawn route

The host-capacity constraint and the configuration failure each carried their own remediation sentence. AdbConfiguration now owns the text and both use it, so the constraint's remediation.action equals diagnostics.remediation.

The synchronous spawn-throw test now runs on Node's execFile route and on the owned spawn route adb uses (stopSignal). The provider test covers inspect_adb_client under EMFILE next to list_adb_devices, and the docs say which operations report the retryable capacity constraint and which report runtime_unavailable.

* fix(process): report EMFILE and ENFILE spawn failures without stdio

After an EMFILE or ENFILE spawn failure Node creates no stdio, so the
owned stop-signal route threw a TypeError while reading the streams and
the later spawn error went unhandled. Attach the error listener first and
capture absent streams as empty, so adb reports retryable host capacity.

* fix(adb): keep a completed push when host capacity stops its digest check

A capacity failure starting sha256sum came back as a retryable error even
though adb push had already written the file. Repeating the request with
overwrite=false is then refused because the destination exists.

Return the receipt with an unavailable device digest and name the capacity
failure in its limitations, so the caller is told the transfer is unverified
rather than advised to retry.

* docs(adb): list host capacity as an unverified push case

---------

Co-authored-by: t <t@t>

* test(gdb): expect configurable stream truncation diagnostics (#8965)

* test(gdb): expect configurable stream truncation diagnostics

* build(gdb): include prerequisite duplicate-import repair from #8884

* fix(javascript): resolve module-level Electron options in functions (#8960)

* fix(javascript): resolve module-level Electron options in functions

* fix(javascript): limit module option ancestry walk

* fix(javascript): preserve uncertain captured argument ordering

* fix(javascript): retain hoisted activation uncertainty

* fix(javascript): retain function ownership through loops

* fix(javascript): account for classic global activations

* fix(javascript): bind first activations to lexical identities

* fix(javascript): retain uncertain global activation timing

* fix(javascript): isolate receiver facts and share computed reads

* fix(javascript): retain projected and opaque global activations

* fix(javascript): refresh activation bounds as opaque effects grow

* fix(ci): format website watch directories without changing configuration

* fix(javascript): share source reads across opaque-effect updates

* fix(javascript): retain constructed-code global activation bounds

* fix(javascript): share runtime activation and receiver facts

* fix(javascript): reuse pattern reads and function positions

* fix(javascript): isolate copied paths and preserve runtime reads

* style(javascript): format migrated reference imports

* fix(javascript): normalize constructor activation and receiver effects

* fix(javascript): retain aliased receiver timing and lexical global this

* fix(javascript): preserve effect-free receiver identity across activations

* fix(javascript): retain outer activation and prototype effects

* fix(javascript): index implicit reads without deep path rescans

* fix(javascript): retain aliased prototype and parameter read uncertainty

* fix(javascript): index reflected reads through intrinsic invocation facts

* fix(javascript): retain unresolved global activation reads

* chore: refresh PR branch after review fix publication

* fix(javascript): retain projected receiver reads and cache method facts

* fix(javascript): retain inherited and implicit activation reads

* fix(javascript): retain caller-owned this uncertainty

* fix(javascript): retain reflected reads with unresolved spread arguments

* fix(javascript): preserve enclosing activation for decorators

* fix(javascript): track intrinsic literal prototype effects

* fix(javascript): retain catch activation from implicit reads

* perf(javascript): reuse effective keys for projected reads

* fix(javascript): retain possible caller-owned ambient effects

* fix(uninstall): preserve caller-selected Kuna caches during purge (#7921)

* fix(uninstall): keep a managed cache namespace whole when it holds a caller-selected Kuna cache

purge --purge-data reported a REA_KUNA_CACHE_DIR selection below the default Kuna cache as retained, then removed it together with its parent namespace. A namespace that contains the selection is now retained and reported, so the retained report is true.

Fixes #7344

* fix(uninstall): also keep a namespace equal to, or reached by symlink traversal from, the selected Kuna cache

Compare the namespace and the selection with the same normalization, treat an equal path as contained, and resolve existing paths before planning so a symbolic link followed by .. is judged by where it leads.

* fix(uninstall): judge a selection with parent traversal where the filesystem resolves it

Collapsing .. lexically contradicts the existing rule that parent traversal after a symbolic link leads elsewhere, and broke the retained-through-symlink-traversal test. Compare spellings without .. directly and resolve existing paths for the rest, so the symlink-parent case still purges the default cache while a selection that resolves into a managed namespace is retained.

* fix(uninstall): keep a namespace whole when the selection's location is unknown

A realpath failure other than ENOENT/ENOTDIR (for example EACCES under an
inaccessible parent) no longer counts as "absent". Each namespace that may
contain the caller-selected Kuna cache is retained instead of purged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(changed-behavior): withhold equality for unknowns and contradictions (#7624)

find_changed_behavior derived behavior_status from each process
comparison's aggregate status alone. An unchanged comparison whose
first_divergence was unknown (residual unknowns prevent proving no
divergence) and a consistent contradiction comparison both fell
through to observed_unchanged, with no unresolved finding and no
changed-behavior registry unknown.

An unchanged comparison with unknown divergence now counts as unknown
and adds one comparison-level unresolved first_divergence finding
carrying its reason, as artifact comparisons already do for coverage.
A contradiction status makes the aggregate unknown, and contradiction
dimensions are classified and counted as contradictions instead of
unresolved branches. Complete unchanged comparisons stay
observed_unchanged and changed comparisons with unknown localization
stay observed_changed.

Fixes #7384
Fixes #7383

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(process): reject contradictory filesystem capture facts (#7631)

* fix(process): reject captures whose top-level filesystem facts contradict their checkpoints

A process capture records its filesystem state twice: files_before,
files_after and filesystem_effects at the top level, and the initial
and final filesystem_checkpoints. Validation never reconciled the two,
and comparison reads only the checkpoints. A caller-authored capture
recording a created file at the top level while its final checkpoint
was empty was therefore accepted and compared as unchanged.

Semantic validation now requires the initial checkpoint to match
files_before with no effects, and the final checkpoint to match
files_after and filesystem_effects. The native producer builds both
representations from the same snapshots, so produced captures are
unaffected; consistent created-file captures still compare as changed.

Fixes #7371

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(process): cover file-list checkpoint mismatches independently of effects

Every rejected case in the checkpoint-consistency test also disagreed on
effects, so removing both file-list comparisons left it passing. Add
initial and final checkpoint cases whose file lists alone disagree while
effects and coverage accounting stay valid.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(process): report deadlines expiring during final cleanup (#7635)

* fix(process): report a deadline that elapses during final cleanup as a timeout

runOwnedCommand checked its absolute command deadline before awaiting
process cleanup, but on the ordinary successful path it consulted only
the caller's cancellation signal afterwards. A command whose deadline
expired while successful cleanup was still awaited therefore resolved
as success.

After cleanup, an elapsed deadline now throws OwnedCommandFailure with
reason "timeout" and the completed snapshot, as docs/tool-design.md
requires a final signal check after the last awaited finalization step.
Existing primary failures, caller cancellation and incomplete-cleanup
classification keep their precedence.

Fixes #7369

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(process): drive the cleanup-deadline regression with controlled time

The regression test gave output collection 100 ms of real time before
the deadline. On a busy worker the deadline could expire during
collection instead, taking a different failure path and failing the
test even with the fix. Use fake timers, wait until cleanup has
started, then advance past the deadline and release cleanup, so the
ordering no longer depends on worker speed.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(enhanced): bound batch decompile input size (#5937)

* fix(artifacts): handle early ASAR extraction cancellation (#5672)

* fix(artifacts): own source errors during output setup

* fix(artifacts): join silent source destruction before returning

* fix(artifacts): retain source cleanup failures with primary errors

* fix(artifacts): join source finalization and classify secondary failures

* fix(firmware): separate source cleanup from output rollback

* fix(artifacts): retain live source cleanup dependencies

* fix(artifacts): preserve source failure completion and semantics

* fix(artifacts): retain scope cleanup owners and typed failures

* fix(artifacts): keep cleanup classification and admission recovery

When the operation completed and only scope cleanup failed, keep the cleanup failure's own reason instead of reporting io, matching main (fixes artifactProvider.cleanupRetry). When a typed primary is rebuilt with pending scope cleanup, carry its userMessage and ASAR header admission so callers keep the configured ceiling and setting.

* fix(artifacts): translate plain file-close failures through the reader path

The outer file-cleanup branch rebuilt every ArtifactFileCleanupFailure as a
ProviderAdapterError, so dyld reads lost their io, unavailable, format and
cancelled reasons and their exact file-cleanup cause. Compose separately only
when the failed primary owns its own translation (a domain error, source
failure or scope cleanup failure); raw and reader primaries are already
projected by the file failure with its exact lease.

* fix(artifacts): bound source destruction by cancellation and keep wrapper admission

After cancellation, SafeOutputTree.write could wait indefinitely for a source
whose destruction did not settle, both in the destroy join and in the
iterator's wait for close. Both waits now end at cancellation plus a fixed 1 s
grace, modeled on the process-output closure grace. A destruction that
outlives it is reported as incomplete source cleanup under an exact lease that
releases only once closure is observed without a late error.

ArtifactResourceCleanupFailure and SafeOutputSourceFailure now keep the
primary's admission, matching withCleanup.

* fix(artifacts): keep one settled wait while observing a stuck source

observeClosure raced the same pending close promise against a new timer every
10 ms, so a source whose destruction never settled accumulated one reaction per
poll for as long as it stayed open. Each poll now waits on its own promise that
the close listener or the unref'd timer settles, leaving one pending wait and
one close listener. The lifecycle test also asserts that a late close releases
the retained owner without an explicit retry.

* fix(artifacts): settle pending reads before cancellation

* test(artifacts): observe the consumed ZIP iterator on cancellation

* test(artifacts): validate projected cleanup resources before sorting

* test(mcp): reserve parent capacity for timeout recovery

* fix(artifacts): contain ASAR cancellation before output consumption

* test(artifacts): hash ASAR cancellation fixture bytes

* fix(decompile): retain inventory limitations and selection (#8466)

* fix(decompile): retain inventory limitations with the latest selection

The manifest and decompile index dropped procedure-inventory
limitations, so a directory separated from its Evidence response could
not explain why functions were selected or omitted. Keep those
limitations on the manifest and in a latest_run index record that also
names the filter and counts that produced them. Older runs remain
represented only by their retained function records.

Fixes #8355

* test(decompile): surface export errors and check function caveats

Address review findings on the inventory-limitation regression:

- Throw the typed export error instead of returning from a failed Result.
- Assert historical function records keep their own pseudocode caveats
  and do not receive the latest inventory warnings.

* fix(pyinstaller): leave PE carrier binary members unmarked (#6730)

The Windows bootloader sets no execute bit on extracted ARCHIVE_ITEM_BINARY
members (the S_IXUSR fchmod in pyi_archive.c is #ifndef WIN32). Mark type b
members executable only when the carrier dialect is posix.

* fix(jeb): reconnect after stale MCP sessions (#3754)

* fix(jeb): reconnect after stale MCP sessions

* fix(jeb): preserve failures for overlapping MCP requests

* fix(jeb): make cleanup operations explicit and stabilize timeout fixtures

* fix(setup): flag unresolved migrated Claude Desktop storage (#8971)

* fix(setup): flag unresolved migrated Claude Desktop storage

* fix(setup): preserve Claude MSIX process view when config is unresolved

* fix(enhanced): restore batch input record limit

* docs(tool-design): audit agent workflow guidance (#8439)

* docs(tool-design): audit agent workflow guidance

* docs(tool-design): check deployed guidance versions

* fix(cli): align ADB directory and package query schemas (#8974)

* fix(cli): align ADB directory and package query schemas

* fix(cli): preserve ADB selector correction details

* fix(devicetree): reject duplicate node paths in Evidence (#8970)

* fix(pe): classify valid DOS targets as unsupported (#7530)

fix(pe): classify confirmed DOS targets as unsupported

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>

* fix(native): reject nonzero reserved ELF dynamic symbols (#7528)

fix(native): validate the reserved ELF dynamic symbol

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>

* fix(evidence): traverse large source link sets safely (#8457)

* fix(verification): use inspected Ghidra JDK (#8440)

* fix(mcp): clarify retained dossier handoff in crash prompt (#8437)

* fix(evidence): clarify unsupported view recovery (#8412)

* fix(evidence): clarify unsupported view recovery

* fix(evidence): explain sensitive capture view refusal

* test(ghidra): check regex recovery at its owning boundary (#8578)

* test(ghidra): check structured snapshot profile mismatch (#8536)

* test(ghidra): check retained historical snapshot evidence (#8381)

* test(ghidra): check retained historical snapshot evidence

* test(ghidra): select historical observations by address

* test(cli): cover Frida argument admission and spawn ordering (#3356)

* fix(cli): reject spawn arguments in Frida attach mode

* test(cli): remove redundant Frida recorder assignments

---------

Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>

* fix(ghidra): report restricted-host temp write denial on Windows (#8889)

* fix(ghidra): report restricted-host temp write denial on Windows

Add a Windows doctor check that creates and deletes a file under os.tmpdir(), and classify a denied java_home.save in Ghidra startup output with its path, Win32 error 5, and TMP/TEMP remediation. The probe covers REA's own process only; a host that restricts only child processes is reported from the child's output at startup.

Fixes #7075

* fix(ghidra): probe the session root and retain failed probe cleanup

The Windows doctor temp_directory probe now writes under ghidraSessionRoot(), the same root Ghidra session runtimes use, instead of os.tmpdir(), which can differ when the inherited temp path has a dot-prefixed element. A probe file whose removal fails is retained on the doctor resource owner so doctor shutdown retries the removal; the result still reports its path.

* fix(cli): normalize exit status on worker cleanup failure (#8049) (#8050)

* fix(cli): normalize exit status on worker cleanup failure (#8049)

* test(cli): verify SDK output status and finalization rejection on exit

* ci: retrigger checks

---------

Co-authored-by: Sarthak Pandey <sarthak@email.com>

* fix(gdb): keep inferior-tty verification for read-only queries (#5539)

* fix(gdb): keep TTY verification across read-only inferior-tty inspection

The console command path cleared `inferiorTtyVerified` before dispatching
any command whose text merely mentioned `inferior-tty`, so the read-only
`show inferior-tty` query permanently revoked a persistent session's
verified output sink; no in-session path ever restored the flag, and a
later close of a live session failed detach verification with
capability_unavailable.

Exempt the exact read-only query forms (`show inferior-tty` and the MI
`-inferior-tty-show`) from the output-mutation predicate; every other
command mentioning the TTY setting keeps revoking, so mutating commands
still fail closed and detach keeps re-reading the live TTY before
detaching. Cover the query forms, composite commands, and the
inspect-then-close detach path with regression tests.

Fixes #5099

* test(gdb): classify show inferior-tty in the one-shot table and rename the TTY classification table

- Add a 'show inferior-tty' row to the 'classifies one-shot GDB
  commands' table: the read-only query no longer invalidates the detach
  proof, a user-visible one-shot behavior change.
- Rename the 'classifies read-only inferior TTY queries as non-mutating'
  table to 'classifies inferior TTY commands' since two of its rows are
  mutation cases.
- Assert via the existing recorded-commands array that the inspected
  'show inferior-tty' text is actually dispatched, and add an
  execute-path assertion that the MI '-inferior-tty-show' form leaves
  the verified-sink flag intact (defensive exemption: REA's own MI calls
  do not route through this gate).

---------

Co-authored-by: akushonkamen <akushonkamen@users.noreply.github.com>

* fix(browser): report an out-of-range generated position as a selection fault (#7133)

trace_web_source_location reported a well-formed generated_position past
the end of the selected script as invalid_format on generated_position,
with no bounds, so callers were told their input was malformed and not
which coordinate to change. Report out_of_range on the line or column
that is past the end, with its valid bounds, as export_web_scripts and
inspect_web_network_capture now do for their selections.

The position scan now returns the bound it ran past, so the offset and
the reported limit come from one pass and cannot disagree on line
terminators.

Fixes #7132

* fix(captures): classify unresolvable capture paths as capture_path input (#7814)

* fix(captures): classify unresolvable capture paths as capture_path input

Fixes #7636

* test(captures): cover unresolvable descriptor paths

---------

Co-authored-by: Abelo9996 <Abelo9996@users.noreply.github.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>

* fix(apple): preserve exact integer precision with post-table plist objects (#8910)

* fix(javascript): resolve electron findings through aliases of interop results (#8914)

* fix(javascript): resolve electron findings through aliases of interop results

* fix(javascript): resolve interop aliases iteratively and check target mutations

* fix(javascript): retain possible writes through uncertain aliases and guard positive reads

* perf(javascript): cache alias change status across semantic interop lookups

* fix(javascript): transient Windows private-runtime source-transfer (#8769)

* fix(javascript): transient Windows private-runtime source-transfer

Parent source-transfer into the Windows private runtime root failed with
EPERM on path-based exclusive create. Write through a native transient
private-runtime path that closes the handle after flush so per-job rm
still works, and yield around the sync write so abort deadlines can fire.

* fix(javascript): yield timer phase before Windows source-transfer write

* fix(il2cpp): reject module image references outside retained inventory (#8956)

* fix(ida): admit Docker host-gateway names as local MCP hosts (#8932)

Containerized REA reaches an IDA MCP server on the container host through
host.docker.internal (Docker, Podman compatibility) or
host.containers.internal (Podman). The HTTP registration refinement only
admitted localhost, 127.0.0.1 and [::1], so doctor reported the valid
gateway registration as invalid_configuration.

Admit both gateway names in the registration's local-host set. The
refinement still requires http or https, no URL credentials, and refuses
every other host.

Fixes #8925

* fix(mcp): report target after failed open (#8613)

* fix(mcp): report target after failed open

* test(session): cover failed open receipt ownership

* test(session): verify restored target receipt

* test(mcp): retain target on snapshot mismatch

* test(mcp): retain oversized open failure receipts

* test(cli): avoid continuing session receipt in one-shot errors

* fix(mcp): report provider after failed switch

* test(ghidra): verify failed open preserves annotations

* test(mcp): join queued receipt request before cleanup

* test(session): assert open failure receipts in lifecycle suites

* test(session): keep open-failure receipt checks within function limits

Move the provider-collision case and snapshot fixture setup out of the
functions that grew when both failure receipts were asserted.

---------

Co-authored-by: Cursor Agent <cursoragent@cursor.com>

* fix(prompts): include existing static artifact investigation routes (#8972)

* fix(prompts): include existing static artifact investigation routes

* fix(prompts): preserve workflows in existing family scopes

* fix(prompts): require readers for Apple resource routes

* fix(rizin): keep debug targets off the debugger command stream (#8647)

* fix(rizin): keep debug targets off the debugger command stream

A Rizin debug target inherited Rizin's stdin, which is REA's command
stream. Once resumed, a target that reads stdin consumed REA's commands,
so close returned cleanup_incomplete and the one-shot CLI hung.

Route the target's stdin to the caller-selected TTY alongside stdout and
stderr. Before detaching, refuse a target whose stdin is still the command
stream, so a Rizin or backend that ignores the key gets a specific,
retained failure instead of a resumed target and a timeout.

Fixes #8642

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(rizin): keep the stdin test launcher's descriptors under dash

The launcher gated its target with `cat "$2" >/dev/null`. dash applies a
simple command's redirection to the shell itself until the command returns,
so on Ubuntu the waiting shell's fd 1 was /dev/null, and that shell is the
target REA reads in /proc. All 8 Linux-gated tests then failed the existing
output-descriptor check. macOS /bin/sh is bash, which redirects only in the
forked child, so this did not show locally.

Gate without any redirection. Production code is unchanged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(rizin): reject unmodeled commands and own cleanup at acquisition

Address review of the stdin regression tests.

The launcher accepted any unknown line, so the marker that followed could
complete it, and assertions only checked that commands were present. An
added `dc` or a repeated `olj` still passed. It now records an unknown line
and exits, and the tests pin the exact command sequence.

Cleanup hung off module state assigned after setup finished, so a failed
setup left its directory and terminal child behind. Each resource now
registers its own finish hook when acquired, using createTestTempDirectory.

Success checks throw the typed error instead of asserting `.ok`, and the
refusal probe no longer sits inside a loop and conditional.

Production code is unchanged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

* fix(ci): align tests with current evidence contracts

* feat(native): report binary hardening for ELF, PE and Mach-O (#8524)

* feat(native): report binary hardening for ELF, PE and Mach-O

Documents inspect_binary_hardening and its CLI equivalent, including
per-property states, supporting evidence, read budgets, and one report
per Mach-O slice. Explains that missing protection imports remain
unknown, signature presence does not establish validity, and hardened
runtime requires inspect_signature. Adds hardening links throughout the
documentation. The supplied diff also removes the advanced CodeQL
workflow and configuration, along with snapshot-binding mismatch
guidance.

* fix(native): validate declared payloads and dynamic tables before hardening rows

Run the shared range checks for ELF, read imports from the dynamic tables
rather than section metadata, and keep an unresolved symbol count apart from
an absent table. Check every Mach-O command before building rows and retain
only the offsets the rows need.

Make the verifier's readelf output wide, check the emitted format before
parsing Mach-O, and place the sources before the libraries in the link.

* fix(native): share Mach-O segment admission with hardening reads

A segment with a section count its cmdsize cannot hold passed the hardening
reader and could enable restrict_segment. Move the size, section count and
file range checks to a shared admission that readMachoImage and the hardening
reader both use, and pin the ELF load-size case with a regression test.

* fix(hardening): reject Mach-O section payloads past the slice and empty ELF interpreters

Segment admission never checked each section's payload range, so a
file-backed section past the slice still produced rows. Decode sections with
the section header owner and mark the slice malformed when a payload leaves
it; zero-fill and empty sections own no file bytes and are exempt.

admitInterp accepted a NUL first byte in a longer extent, which counted an
empty interpreter as PIE evidence. It now requires a nonempty path.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01KuWHGvzJkrhCqjtEHUwqyH

* fix(native): read CFG instrumentation from decoded GuardFlags

Use the IMAGE_GUARD_CF_INSTRUMENTED flag that guardFlagRecord already
decodes instead of masking the raw GuardFlags word a second time.

* fix(native): reject ELF table spans a second PT_LOAD remaps

The hardening reader mapped DT_STRTAB, DT_SYMTAB and hash tables through
the one PT_LOAD containing the table's first address. A second PT_LOAD
starting inside the table could map the rest of it from other file bytes
and the reader still reported parsed import evidence.

Cap each mapping at the next PT_LOAD that starts inside it, reject a
requested range that crosses that boundary, and stop hash reads at the
same limit, matching the conflicting-mapping refusal in readElfSymbols.

* fix(native): dedupe ELF note tables only on shared boundaries

The hardening reader dropped any note table whose bytes another table
already covered. A covering SHT_NOTE can hold a non-GNU note whose
descriptor is itself a complete GNU property note, while PT_NOTE names
that inner note directly. Walking only the outer stream missed the GNU
marker and reported CET disabled.

Drop an alias only when it starts and ends on boundaries of admitted
tables, which are note boundaries of the walked streams. Any other
covered alias leaves the feature rows unknown, as a partial overlap
already does.

* fix(native): admit every Mach-O symbol record after a canary match

The Mach-O stack protector scan returned as soon as it found an
undefined ___stack_chk_fail, so a later undefined symbol whose n_strx
lay outside the string table was never checked. The same damaged table
parsed or failed as malformed depending only on record order.

Keep the match and finish the bounded record walk. Records after the
match are only checked against the string table bounds, so their names
are not read or charged to the scan budget. The ELF reader already
admits its whole symbol table before matching names.

* fix(native): accept ELF load aliases with the same file translation

The hardening reader treated every PT_LOAD that starts inside a table,
or that also contains the table's address, as a conflicting mapping.
A load with the same address-to-file translation names the same file
bytes, so tables it overlaps still have one interpretation, and the
canonical ElfLoadMap already merges such spans.

Treat equivalent loads as one interpretation. A load with a different
translation, or the zero-filled tail of an equivalent load, still ends
the usable range, so a remapped table is still rejected.

* fix(native): keep same-span ELF note tables with different alignments unknown

A section and a program header that share endpoints were treated as one
note stream even when their effective note alignments differed. Walking the
same bytes at 4 and 8 can frame different notes, so dropping the second table
could hide a GNU property word and report CET or BTI as disabled.

Require matching effective alignment at both endpoints, and no alignment
change inside the covered span, before treating a table as an alias.
Otherwise mark the feature rows unknown. The fixture's .note.gnu.property
section now declares the class's note alignment, as toolchains emit it.

* refactor(native): read LC_SYMTAB through the shared fixed-word decoder

Move the Mach-O fixed uint32 command layouts out of MachoCommandNames
into domain/apple/machoLoadCommands so there is one owner of those
offsets. MachoCommandNames and the hardening reader now both decode
through it; the hardening reader keeps its own bounds and import policy.

* fix(native): skip Mach-O common definitions in canary imports

A common definition sets N_UNDF|N_EXT like an import but stores its
allocation size in n_value. An object holding only
`int __stack_chk_fail;` therefore reported stack_protector: enabled.

Require a zero n_value before an undefined external counts as an
import, for both nlist widths.

* refactor(native): read linkedit data commands through the shared fixed-word decoder

readMachoLinkeditDataCommand reproduced the dataoff/datasize offsets that
FIXED_WORD_FIELDS already owns. Take the command and decode through
decodeMachoFixedWordFields, as readMachoSymtabCommand does, keeping the
truncation and endianness behavior.

* fix(native): skip empty SHT_NOTE sections in ELF hardening

A zero-sized SHT_NOTE owns no bytes, so the section directory marks it
not file-backed and the hardening reader rejected the whole image as
malformed, while readElfImage accepted the same bytes. Skip empty note
sections before the file-backing check; they have nothing to walk.

* fix(scripts): run hardening verifier commands through the shared owner

The binary hardening verifier started its probes and compiler drivers with
raw spawnSync, which bypassed the src/process/ supervision that AGENTS.md
requires. Every launch now goes through createVerifierCommands, and the
temporary root is removed only after the owner closes cleanly.

* fix(scripts): clean up hardening verifier commands on Ctrl-C

SIGINT or SIGTERM ended Node before withVerifierCleanup ran, so detached
compiler trees and the temporary root could outlive the verifier. The
verifier now turns those signals into an abort that every owned command
receives, so cleanup closes the owner and removes the root before exit.

* fix(scripts): fail the hardening verifier when a signal lands outside a command

Only the owned commands read the interruption signal, so a SIGINT or
SIGTERM during the final cleanup or between commands was recorded and
then dropped, and the verifier exited 0. After cleanup settles, the
verifier now throws the interruption reason. A failure the operation or
its cleanup already raised still leaves first and is not replaced.

* fix(native): fail Mach-O slices with a malformed encryption command

The hardening reader turned every malformed status from the shared
encryption reader into an unknown `encrypted` row, so a short
LC_ENCRYPTION_INFO_64 or an encrypted range past the slice still left the
slice parsed with a full report.

Only two conflicting encryption commands stay an unknown row now. Any other
encryption defect fails the slice like other structural command failures.

* fix(native): ignore STB_LOCAL undefined ELF symbols as imports

A local undefined __stack_chk_fail or __memcpy_chk is never resolved
against another object, so it does not establish an external import.
Skip STB_LOCAL bindings when reading protector signs, and give the
fixture's positive symbols STB_GLOBAL binding.

---------

Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

---------

Signed-off-by: Rudy Celekli <rudy@gradiahq.com>
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Edgar Arakelyan <edgar.arakelyan@scale.com>
Co-authored-by: ShuaixinHuang <1836656514@qq.com>
Co-authored-by: highmachs <samarjeeth06@gmail.com>
Co-authored-by: hhang <17309584214@163.com>
Co-authored-by: hhang <169027046+xu91102@users.noreply.github.com>
Co-authored-by: Paritosh Lahre <155938586+SandstromPL@users.noreply.github.com>
Co-authored-by: Adolanium <94890352+Adolanium@users.noreply.github.com>
Co-authored-by: 김준호 <101695482+chordpli@users.noreply.github.com>
Co-authored-by: t <t@t>
Co-authored-by: Hasan Zayni <36798269+dark13b@users.noreply.github.com>
Co-authored-by: Salman Almutairi <141588124+salmanalmutairi1@users.noreply.github.com>
Co-authored-by: Lucien <164857476+dakjdakd@users.noreply.github.com>
Co-authored-by: RRFZ <247457381+Plastic-time@users.noreply.github.com>
Co-authored-by: 2SinceJuly <hongjxiao@gmail.com>
Co-authored-by: Wade <160517347+Sriram-PR@users.noreply.github.com>
Co-authored-by: Martin Klein <36695017+flitzrrr@users.noreply.github.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
Co-authored-by: Rudy Mizrahi Celekli <47457359+rudycelekli@users.noreply.github.com>
Co-authored-by: xin zhuang <65798732+1052326311@users.noreply.github.com>
Co-authored-by: Beqa <91750923+BeqaKs@users.noreply.github.com>
Co-authored-by: NoThing <sarthakpandey5667@gmail.com>
Co-authored-by: Sarthak Pandey <sarthak@email.com>
Co-authored-by: akushonkamen <74654766+akushonkamen@users.noreply.github.com>
Co-authored-by: akushonkamen <akushonkamen@users.noreply.github.com>
Co-authored-by: amyanger <57688398+amyanger@users.noreply.github.com>
Co-authored-by: Abel Yagubyan <abelyagubyan@berkeley.edu>
Co-authored-by: Abelo9996 <Abelo9996@users.noreply.github.com>
Co-authored-by: Jiabin Yin <54463072+Nolkee@users.noreply.github.com>
Co-authored-by: Cursor Agent <cursoragent@cursor.com>
Co-authored-by: Mohamed Ayoub Eleuch <58662566+AyoubElleuch@users.noreply.github.com>
Co-authored-by: Kaoru0822 <kanadekitauji@proton.me>
Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com>
Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com>
Co-authored-by: gensokyo-dev <gensokyo-dev@users.noreply.github.com>
2026-11-06 02:06:39 +08:00
Kaoru0822andClaude Opus 5.5 710fad8acf feat(evidence): discover missing Evidence links without transferring records (#8633)
* feat(evidence): discover missing Evidence links without transferring records

An agent could only learn that a retained record's source was absent by reading
complete records or by having a downstream analysis refuse. The summary said
nothing about links, and complete-record retention was easy to mistake for
source closure.

- Add detail: links to get_evidence_bundle and CLI inspect-evidence-bundle:
  paged link rows with retained or missing status and no record payloads, for
  selected records against the whole session or file.
- Add retained-closure traversal, the walk composed workflows require, reporting
  complete or incomplete. Direct reads make no closure claim.
- Count direct and missing direct links in the summary.

Fixes #8454

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(evidence): count a repeated Evidence link once in every delivery

The Evidence schema does not deduplicate evidence_links, so the summary counted
a repeated link twice while link rows and counts reported it once. Both now read
one helper for a record's distinct direct links.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(evidence): validate link delivery against the advertised schemas

The test never called tools/list, so neither the shared validator nor the MCP
client checked its replies against what each profile advertises. A schema that
rejected the links result could have passed. Fetch the advertised definition and
validate every request and reply against it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-02 05:14:34 -08:00
Kaoru0822andClaude Opus 5.5 dec8d2d588 feat(native): select retained batch decompile results through analysis views (#8629)
* feat(native): select retained batch decompile results through analysis views

A completed batch_decompile could only be read whole. When it did not fit the
MCP response budget, or an agent wanted one function, inspect_analysis_view
refused the parent as unsupported and the only recovery was exporting the
session.

- Own the batch result schema in the domain, replacing the contract's copy and
  the workflow's hand-written item types.
- Add summary and batch-decompile views: body-free rows keyed by original index
  with exact filters and opt-in bodies, and UTF-16 pages of one body.
- Report the decompiling provider from the upstream analysis profile, since the
  Evidence provider is the composing workflow.
- Keep batch limitations visibly aggregated rather than attributing them to one
  successful item.

Fixes #8498

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(native): count every unavailable entry label in a batch summary

label_unavailable only counted failed lookups, so a batch whose provider
answered null for every label reported zero. The identity contract defines a
null name as an unavailable label in both cases.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(native): require advertised batch schemas through the shared validator

A local validator map dropped any tool without an output schema, so removing an
advertised schema would have left these contract tests green. Require both named
schemas and validate through createMcpSchemaValidation, as docs/testing.md asks.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-01 23:58:54 -08:00
Kaoru0822andClaude Opus 5.5 eb39a07966 feat(evidence): read selected complete records without the whole bundle (#8528)
* feat(evidence): read selected complete records without the whole bundle

get_evidence_bundle could discover a record by exact ID, but reading it
required the complete canonical bundle: complete + filters was rejected,
and inspect_analysis_view refuses parents without a view, such as
annotations, pseudocode sources and native traces.

- Add detail: records, a page (offset, limit; default 0, 8) of the
  complete matching records in canonical bundle order. Records keep their
  original IDs, subjects, providers and readback; missing_evidence_links
  names direct links of the returned records that are not retained.
- The selection is labelled as historical and not an importable bundle;
  complete keeps returning the canonical bundle, and offset/limit
  require detail: records.
- Filters keep one owner shared by summary and records delivery, for the
  MCP session and the CLI's inspect-evidence-bundle.
- An oversized record page now advises a smaller limit or one
  evidence_id; whole-bundle overflow guidance mentions record reads.

Fixes #8307

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* test(evidence): compare record-selection guidance with its owners

Assert the record-selection limitations and oversized-page guidance
against their owning constants, and check the reported limit facts
separately, instead of pinning explanatory phrases.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-01 08:56:58 -08:00
morluto 23de10bb28 fix: streamline tests and preserve Darwin process ownership (#8275)
* test: strengthen suite guards and regression oracles

* test: share JSON client registration contract

* test: reuse fixtures and reduce repeated setup

* fix(process): preserve ambiguous Darwin token ownership

* test(process): bound child readiness waits
2026-10-31 16:43:04 +08:00
Kaoru0822andClaude Opus 5.5 bfa082f777 fix(analysis-view): keep inferred confidence on views of inferred Evidence (#8099)
createAnalysisViewEvidence chose view confidence from the view result kind
only, so every summary, page or item view of an inferred parent
(compare_source_to_bundle, inspect_evm_interface, partially resolved
inspect_il2cpp_metadata) was sealed as derived while keeping the parent's
authority. A projection never makes its facts more certain: an inferred
parent now yields inferred views through CLI and MCP alike. Observed and
derived parents keep their existing view confidence and identities.

Fixes #8098

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-30 00:59:53 -07:00
morluto 4f212c6a30 fix(analysis): preserve artifact and selection error ownership 2026-10-24 22:54:05 +08:00
morluto 0f411508c3 fix(environment): decouple capture chronology from clock formats
Use exact recorded start facts for state extraction independently of derived clock formatting limits. Preserve millisecond interval policy, missing-time fallback, redacted-write cutoffs, and bounded timestamp retention; remove the superseded clock comparator.

Two source and two compiled CLI regressions reproduced post-write values being selected as initial state. State/clock/date, CLI/MCP view, and static checks passed after the fix.
2026-10-24 11:31:39 +08:00
morluto c010fafe45 test(cli): align fixtures with current owning contracts 2026-10-24 08:22:14 +08:00
morluto bd8e1fb2c1 fix(artifacts): publish addressable inspection sources through both adapters 2026-10-24 02:50:51 +08:00
morluto 17cd07342d fix(cli): preserve selected JSON members and Markdown table text
Preserve boundary facts and uncertainty through their consumers. Add focused production-boundary regressions and update affected documentation.

Fixes #6756
Fixes #6752
Fixes #6755
2026-10-23 23:49:26 +08:00
morluto b7f8bbb49f refactor(analysis-view): unify request and source ownership 2026-10-23 07:57:14 +08:00
Mohamed Ayoub Eleuch 295e7efddf fix(analysis-view): preserve artifact parent schema diagnostics (#6361)
* fix(analysis-view): preserve artifact parent schema diagnostics

* fix(artifacts): locate nested Evidence validation failures
2026-10-23 01:59:49 +08:00
Jay-Alexander Elliot 57fd3ea5d8 feat(cli): summarize managed members with durable Evidence paging (#5167)
Fixes #5148.

Add opt-in durable managed member summaries and authenticated paging while preserving complete default output, original Evidence, cleanup ownership and queued cancellation.

Verified with bounded real Newtonsoft/Redux/Rust tasks, independent oracles, 556 focused tests and the expanded domain gate; paired token estimates and latency tradeoffs are recorded in experiments/analysis-efficiency/managed-cli.md.
2026-10-22 00:43:30 +00:00
3fca2e0ca6 feat(environment): extract the initial state a capture's reads observed (#5319)
* feat(environment): extract the initial state a capture's reads observed

Add the environment-state analysis view. From the parents the environment
manifest accepts, it extracts the data the capture's reads observed before
the first related write: entity types with an identity field (proved by a
path parameter or inferred from an identity name), entities with their
recorded values and provenance, documents for written non-entity paths, and
a render plan per read tool that is kept only when it reproduces the tool's
latest initial recordings from the state; every other read tool is a
recorded view with the reason. The Evidence is always inferred.

Response-body decoding moves to a domain owner shared with replay, exact
JSON parsing moves to the owner of the exact-number policy, the manifest and
state views share parent admission and record grouping, and
projectAnalysisView takes its accumulators as one object.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(environment): bound state at redacted writes; infer identity only from items

A scenario write whose URL was redacted has no request line, so it was
dropped and reads after it counted as initial state. Such a successful
write now joins the timeline with an empty path, whose root relates to
every type, so it ends every type's state; a limitation counts them.

A list whose recordings were all empty passed the "every listed item
carries it" check vacuously and published an identity field nothing
showed; it now needs at least one item, else the view stays recorded
as no-identity.

A value that differed between two request lines of one item tool, such
as a query variant, was called volatile, and the gate then substituted
each recording's own value; only repeats of one request line now show
volatility, so differing lines go through fields-differ.

List membership is compared only while a list can still be the whole
collection, and merged entities are indexed by type and collection once,
so paged captures no longer cost pages times entities (8,000 pages of
40,000 entities: 5.7 s to 0.23 s).

Docs and the tool contract say scenario state keeps the capture's
redaction markers and how redacted writes bound it.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(environment): keep first sightings, one list pointer and linear field unions

Entities took the order of the first plan observed, and item plans run
before list plans, so a complete list read before its detail reads came
out reordered and lost "all" membership; each entity now keeps its
earliest recorded sighting.

A list plan reused the first recording's pointer for later recordings,
so a later response that was itself an entity wrapping a list was read
as that list; every recording must now locate the same list.

The field union scanned its ordered list for every key, quadratic in an
object's width; a set now answers membership.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(environment): keep post-write values and partial lists out of the initial state

A value that changed between repeats of one request line was named
volatile whenever no write under the type's own root lay between, so a
write under another root (for example POST /api/dashboards/db before a
second GET /api/search) left its effect in the initial state. Any
recorded write between the two observations now leaves every tool of the
type recorded with reason fields-differ instead.

A list was published with membership "all" even when a total or count
envelope member exceeded the number it listed. Such a counter now makes
the membership "recorded".

Also drop a stale doc comment on ObservedEntity.order.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(environment): scope item-shaped and deleted written paths out of documents

State documents are held only for list-shaped paths a POST, PUT or PATCH
tool writes. Reads of item-shaped written paths and of paths that are only
deleted stay recorded views; the guide now says so and the spec defers them
to a later increment of #4933.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(environment): count writes in flight when a value changes between reads

The volatility check compared write start positions with the two reads,
so a write already in flight when the earlier read started was missed and
its effect was named volatile. A write now counts when its interval
overlaps the span from the earlier read's start to the later read's end.

The check also ran once per changed field and scanned every write. It now
runs once per pair of observations, answered by a binary search over the
writes in timeline order and the latest end among each prefix.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(environment): catch cross-tool changes across writes; read only item totals

A value that changed across a write was caught only between repeats of
one tool's request line, so a list read before a write and an item read
after it put the post-write value into the initial state. Changes are
now classified per entity in timeline order after observation: across
any recorded write, a change between repeats of a line or between two
lines of the type rewrites the type (every tool recorded as
fields-differ); with no write between, a repeat's change is volatile.
The classification lives in environmentStateMerge.ts.

Any numeric member whose name contained "total" or "count" counted as
an item total, so total_pages, account_id or page_count made complete
lists partial. Item totals are now members whose name tokens include
total or count and none of page, pages or per; a string of digits counts
as a number; and a set has_more, next or next-page token member also
marks the list partial.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(environment): keep post-write observations out of initial state

* fix(environment): retain field provenance and bound state inference work

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Co-authored-by: gensokyo-dev <gensokyo-dev@users.noreply.github.com>
2026-10-19 20:33:46 -07:00
f93a0335a8 feat(analysis-view): project rich captures from Evidence files and template path pairs (#5293)
Project large local Evidence captures through the authenticated file-source boundary and add guarded opt-in sibling-pair path inference. Preserve request cancellation, resource ownership and file-relative validation diagnostics.

Validated relevant source and compiled CLI/MCP/environment boundaries, static/build/docs/catalog gates, and a real isolated Gitea 28.2.0 capture through CLI, default stdio MCP and HTTP replay. Current-head automated review passed; unrelated long-running platform jobs may still be pending.

Co-authored-by: Edgar Arakelyan <edgar.arakelyan@scale.com>
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Co-authored-by: gensokyo-dev <gensokyo-dev@users.noreply.github.com>
2026-10-20 10:33:52 +08:00
291059adb4 feat(analysis-view): project an environment manifest from web network captures (#4954)
* feat(analysis-view): project an environment manifest from web network captures

Add the environment-manifest view kind to inspect_analysis_view for retained
HAR Evidence: the primary origin's recorded request lines become a
deterministic tool surface (names, path templates, parameters with their
rule and basis, observed query names, value-free body shapes, record
pointers), with excluded groups, three fixed unknowns and the shared
projection budget. The four format rules always apply; after-uid-literal,
opaque-token and sibling-variance are opt-in and labelled, and literal
fold-in never touches a format-rule parameter. The api-surface accumulator
moves onto shared route, media-type and budget helpers without behaviour
change.

Refs morluto/rea#4933

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* test(web-network): check the manifest refusal text like the api-surface refusal

The real-capture verifier stringified the whole MCP result for the
environment-manifest refusal, so a declared "[" literal matched the result
envelope itself; compare the parsed refusal as the api-surface branch does.

Refs morluto/rea#4933

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* docs(specs): record the hosted web-network lane run for the manifest view

Refs morluto/rea#4933

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* docs(specs): reconcile the manifest view verification scope note with the hosted run

Refs morluto/rea#4933

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* fix(analysis-view): bound body, route and name work in the environment manifest

Addresses the automated review findings on the PR: read request bodies at the
top level only instead of walking nested values; admit every literal route
part before materializing it; compare at most 32 segments in sibling-variance
and say so; keep stop words literal after a uid literal; keep the next
collision suffix per tool-name base; preserve a templated exclusion when two
groups print the same row.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* fix(analysis-view): keep manifest folding, naming and media-type reads linear

Addresses the second automated review round: fold literal siblings through
set membership, key collision suffixes by the truncated name they share, and
charge a request media type before it is scanned.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* fix(analysis-view): charge the manifest group key before building it

Addresses the third automated review round: the composite key copies the
method, origin, template and rules, so that copy is reserved before the key
is stringified.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* fix(analysis-view): accept a +json suffix only on application media types

Addresses the fourth automated review round: `image/example+json` or
`text/example+json` no longer counts as JSON for origin selection, exclusion
or body shapes, matching the documented `application/json` and
`application/*+json` contract.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* fix(analysis-view): require the capture parent's exact subject for a manifest

Addresses the fifth automated review round: the manifest cites the report
path and digest, so a parent whose subject is absent or names another path or
SHA-256 is refused at admission, as the capture view already does; the
api-surface view keeps its existing admission.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* fix(analysis-view): share truncated suffix allocation work

Track suffix progress by the actual truncated prefix and suffix width. Distinct full names can collide only after suffix truncation; sharing that progress prevents quadratic rescanning while preserving shorter free names and existing allocation order.

Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>

* fix(analysis-view): merge only identifier-like siblings under sibling-variance

Addresses the sixth automated review finding: a bucket merged whenever one
literal carried a digit, folding plain words such as `mine` into the
parameter. The rule now partitions the bucket, merges the identifier-like
siblings and leaves the other literals as their own tools.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* fix(analysis-view): combine qualifying sibling cohorts

Keep coded identifiers and a qualifying plural hyphenated cohort in one eligibility Set before checking the minimum merge size. Read each literal once and reuse the same membership at the consumer, preserving non-identifier routes and the three-hyphen minimum.

Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>

* docs(analysis-view): clarify opt-in sibling folding

State the additional sibling-variance selection in the guide, acceptance specification and MCP parameter description. Preserve the existing single-rule behavior and caller-selected inference rules.

Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>

---------

Co-authored-by: Claude Fable 5.1 <noreply@anthropic.com>
Co-authored-by: gensokyo-dev <342580529+gensokyo-dev@users.noreply.github.com>
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
2026-10-19 07:07:37 +08:00
morlutoandogutdgn 89dd71f0f0 fix(analysis-view): preserve native relationship coverage
Carry the parent native coverage facts through inline and retained views independently of row-page exhaustion. Preserve uncertainty, optional diagnostics and source Evidence.

Refs #3891, #4263

Co-authored-by: ogutdgn <79801848+ogutdgn@users.noreply.github.com>
2026-10-16 07:25:22 +08:00
YsopwnableandKaoru0822 ec394a2bdf feat(javascript): add filtered retained module reference views
Expose filtered canonical module identities, retained source-range counts and mixed support through the existing shared CLI/MCP analysis view. Preserve full-item access, source selection, provenance and partial coverage while allocating only the selected page.

Verify exact facts and CLI/MCP identity on shipped Obsidian, record complete-task BPE/resource measurements and reuse owned-process supervision for optional tokenizer cleanup.

Fixes #4092
Part of #4027; decision #4091.

Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
2026-10-15 21:05:00 +08:00
Nianze Wu dd36b4a8a0 feat(analysis-view): report observed query parameter names (#2982) 2026-10-14 04:00:21 +08:00
Ysopwnableandfactory-droid[bot] 58fb372071 feat(analysis): add opt-in retained inventory and WASM views (#2122)
Add opt-in retained inventory and WASM Evidence views with exact nested output contracts and a small static WASM descriptor. Preserve old complete CLI/MCP workflows, producer choices, original authenticated Evidence and cleanup ownership.

Validated with real public applications, genuine old Evidence migration, 123 focused assertions, 11 synchronized description checks and 42 installed-package WABT cases. Detailed generated experiment JSON stays outside the final tree; concise findings and reproduction inputs remain. Main-existing completion/package CI failures are separately attributed and left unchanged.

Refs #2016

Co-authored-by: factory-droid[bot] <138933559+factory-droid[bot]@users.noreply.github.com>
2026-10-12 21:17:52 +08:00
880a603fe8 feat(mcp): derive an API surface view from retained web network captures (#1891)
* feat(mcp): derive an API surface view from retained web network captures

* fix(mcp): fail closed on sensitive parents and budget api-surface path expansion

* fix(mcp): keep recorded api-surface paths and budget only templated segments

* fix(mcp): read api-surface paths only from canonical URLs and charge new values once

* fix(mcp): reject authority-less api-surface URLs and key groups by rule positions

* fix(mcp): label api-surface confidence from all groups and cap transient path memory

* fix(mcp): budget api-surface dedup sets and narrow detail outputs

Charge retained deduplication sets before allocation, advertise only
each analysis operation's summary from its detail output, and document
that any templated group makes every API-surface page inferred.

* fix(mcp): bound api-surface path text and record limitations

Charge retained literal path copies before allocation, publish only
valid media-type essences, and deduplicate examined record limitations
onto the view.

* fix(mcp): keep api-surface refusals and path splits inside the reply budget

Sensitive-parent refusals now use the token sensitive_values_unretained so declared literals are not echoed. A later path split is charged against bytes already retained, and the published example includes the HAR record limitation with its matching digest.

* fix(mcp): budget api-surface method text before group keys

Charge method and origin text against the reply budget before the group key is serialized. Document that samples merge only when method, origin, and exact segment rules match.

* fix(mcp): bound api-surface copies and control-character authorities

Reject authorities containing a tab or newline so WHATWG cannot move userinfo into the recorded path. Charge four path copies, two method and origin copies, and each distinct content type against bytes already retained.

* fix(mcp): preflight combined api-surface group charges

Total path, method, origin, and segment charges before retaining a new group. Track content types in a set so distinct MIME essences are not compared quadratically.

* fix(mcp): charge api-surface content-type sets on first use

Create the per-group content-type set when the first essence is retained, and charge it before allocation. Groups with no content type no longer keep an empty set.

* refactor(analysis): centralize API-surface ownership and admission

Own grouping, deduplication, and combined retained/temporary resource admission in one accumulator. Charge fixed group storage before allocation and materialize only the requested page.

Share recorded URL parsing between capture redaction and projection, preserving source paths and excluding ambiguous credential fields. Cover resource admission invariants and the compiled HAR-to-view workflow.

* fix(analysis): admit capture schema clone before parsing

* fix(javascript): share Electron mutation proof with wrapped calls

* test(mcp): align graph and catalog checks with current contracts

* fix(analysis): admit and validate portable capture views

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Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com>
Co-authored-by: Cursor Agent <cursoragent@cursor.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
2026-10-12 10:44:17 +08:00
Ysopwnable 17f704050f feat(evidence): discover retained records without full payloads (#1682)
* feat(evidence): discover retained records without full payloads

* fix(evidence): guide oversized results to retained discovery

* style(tests): format retained discovery recovery assertion
2026-10-11 11:18:26 +08:00
jhuang-twandN0zoM1z0 a9ee2360fd feat(native): inspect oversized retained function dossiers via bounded views
Add caller-selected native dossier facets with preserved Evidence identity, provenance, unknowns and transport recovery.

Refs #1247 and #1065.

Co-authored-by: jhuang-tw <77732008+jhuang-tw@users.noreply.github.com>
Co-authored-by: N0zoM1z0 <161784452+N0zoM1z0@users.noreply.github.com>
2026-10-10 12:18:50 +08:00
Ysopwnable 4d95f2b2e7 fix(validation): retain unmatched union correction details
Preserve actionable field paths and schema-declared variants for unknown or missing discriminators.

Closes #1421. Refs #1065.
2026-10-10 12:15:11 +08:00
morluto ad59531a96 refactor: remove forwarding exports and redundant aliases 2026-10-09 22:46:09 +08:00
Matt Van HornandMatt Van Horn db675f1d52 feat(mcp): select views of retained analysis results (#1180)
Add explicit summary, facet, item and paged views of retained analysis Evidence without repeating analysis. Preserve captured observations, graph validation, artifact identity, coverage and complete default results.

Fixes #1050

Verified with focused source, CLI, pinned-SDK schema and MCP tests, serial static checks, and one complete native Windows Notion ASAR workflow. Real Hopper/Ghidra verification was not performed for this provider-independent projection change.

Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com>
2026-10-09 12:45:48 +08:00