Move shared function, dossier, inventory, reference and output semantics from the legacy Hopper module to native domain owners. Migrate provider, adapter, test and verifier consumers directly.
Share endpoint identity and repeated-name ambiguity across call and reference dimensions. Compare same-artifact procedure entries by canonical coordinates while retaining raw reference sites and source Evidence. Keep observed comparison status separate from reconstruction proof.
Fixes#6853
Own endpoint identity and per-edge kind knowledge in one parsed reference
representation. Preserve exact same-artifact coordinates and cross-artifact
name uncertainty, including generated and nonunique procedure labels.
Use exact multiplicity-preserving sparse compatibility flow instead of
positional/greedy pairing or a quadratic adjacency matrix. Share the native
coordinate parser with call paths and remove the superseded projections.
Validate public MCP comparison/reconstruction outcomes, independent tiny
permutation oracles, dense matching and advertised JSON Schemas.
Fixes#4210Fixes#5131
Co-authored-by: Henglie <ebhenglie@gmail.com>
morluto