* feat(web): export captured scripts for JavaScript application analysis
Add capture adapters, conservative source path projection, verified exclusive publication and a shared CLI/MCP workflow. Retain source identities, missing content and competing URL versions in a complete manifest for existing static analysis.
Refs: #774Closes: #799
Assisted-by: Yukari (gensokyo-skills:yukari-boundary-analysis)
Assisted-by: Kogasa (gensokyo-skills:kogasa-surprise-testing)
* test(web): include script export in independent effect audit
Register the new contract family in the independent inventory audit and verify the filesystem, session, network and idempotence metadata of the named export contract.
Assisted-by: Yukari (gensokyo-skills:yukari-boundary-analysis)
Assisted-by: Kogasa (gensokyo-skills:kogasa-surprise-testing)
* fix(web): preserve capture limitation values in export manifests
Align the export boundary with passive capture’s string contract instead of rejecting an admitted empty limitation. Cover the publisher boundary and regenerate canonical schemas and identities.
Assisted-by: Yukari (gensokyo-skills:yukari-boundary-analysis)
Assisted-by: Kogasa (gensokyo-skills:kogasa-surprise-testing)
* feat(ghidra): edit function annotations atomically
Return annotation readback and refreshed function analysis through CLI and MCP. Own each database transaction, invalidate caches and immutable snapshots, preserve executable bytes, and retain the Windows mutation boundary.
Assisted-by: Nitori (gensokyo-skills:nitori-reverse-engineering)
* fix(ghidra): preserve qualified function annotation identity
Preserve namespaces during local name writes and match qualified readback to the refreshed dossier. Add a producer-shaped regression and verify a real namespaced C++ function through the CLI.
Assisted-by: Nitori (gensokyo-skills:nitori-reverse-engineering)
* test(ghidra): align verification with annotation authority
Keep strict capability and profile checks while admitting the explicit session metadata operation. Verify packaged transport authority and atomic transaction commitments and preserve a read-only Windows expectation.
Assisted-by: Nitori (gensokyo-skills:nitori-reverse-engineering)
* feat(ghidra): enable Windows x64 read-only analysis
* test(ghidra): exercise native Windows runtime boundaries
* test(ghidra): verify current Windows inventory and isolate ACL observer
* fix(ghidra): align Windows admission and address P0 review
* feat(ghidra): admit explicit DOS COM analysis
Carry caller-selected COM interpretation through CLI, MCP and target
identity, seed real-mode entry/context before Ghidra analysis, and verify
complete loaded bytes, source mappings and measured register context.
Keep original binaries unchanged and PSP/runtime coverage explicit.
Assisted-by: Nitori (gensokyo-skills:nitori-reverse-engineering)
* fix(verification): validate COM package selection before allocating fixtures
* feat(ghidra): verify DOS load images and expose memory evidence
Verify measured source bytes, mapped regions, fixups and entries against
the immutable MZ snapshot, retaining independent checks and raw evidence.
Expose loaded byte reads and authoritative original file offsets through
both CLI and MCP, with focused and actual Ghidra DOS verification.
Assisted-by: Nitori (gensokyo-skills:nitori-reverse-engineering)
* fix(cli): describe memory inspection arguments
* test(ghidra): align bridge fixtures and CLI capability accounting
* refactor(domain): split error taxonomy into thematic modules
Move each error family out of domain/errors.ts into its own module
(base, core, provider selection/adapter, browser observation,
artifact, evidence, unknown registry, hopper, configuration) and
relocate AnalysisErrorProjection to analysisErrorProjection.
Migrate all 162 importers to the owning modules and delete
errors.ts. No re-export shims; behavior is unchanged.
* refactor(runtime): name all silent catch causes without changing diagnostics
Bind cause in every bare catch and unhandled rejection across src/.
Real failures preserve the cause for logging; best-effort cleanup
carries an explicit comment. Caller-visible and Evidence strings are
byte-identical to before.
Move each error family out of domain/errors.ts into its own module
(base, core, provider selection/adapter, browser observation,
artifact, evidence, unknown registry, hopper, configuration) and
relocate AnalysisErrorProjection to analysisErrorProjection.
Migrate all 162 importers to the owning modules and delete
errors.ts. No re-export shims; behavior is unchanged.
Move official, enhanced, and session contract arrays with their
builders into officialToolContracts, enhancedToolContracts, and
sessionToolContracts. toolContracts keeps the ordered assembly and
resolver. Migrate all importers including catalog scripts. No
re-export shims; generated catalog output is unchanged.
* refactor(domain): consolidate canonical ordering and digest helpers (#624)
* refactor(domain): consolidate canonical ordering and digest helpers
Single owner for code-point ordering (domain/canonicalOrdering.ts)
and canonical JSON digests (domain/comparisonSemantics.ts). Delete
all local compareCodePoints/compareText/digestCanonical duplicates
and migrate every importer. No re-export shims.
* fix(ci): allow slower real browser startup
* chore(config): remove dead eslint, dedupe scripts, cacheable turbo tasks
Delete eslint.config.js (oxlint is the linter), drop lint:dead alias,
pin smol-toml, fold jscpd/scan:todos into check:pr, make test:run
cacheable, align oxlint ignores.
* fix(config): hash all test inputs for cached runs
* docs: fix architecture diagram and pretty-print tool catalog
Drop dangling REPLAY edges, add dotnet/reference/error/evaluation
nodes. Emit 2-space JSON from the catalog generator and regenerate.
* test: extract shared fixtures, drop knip carve-outs
Dedupe android/apple session tests, bundler adapter headers, and
reconstruction helpers into tests/support fixtures. Delete unused
type aliases and the knip ignoreIssues block. Lower jscpd threshold
2.7 to 2.5.
* refactor(app): split Setup and ProcessOwnership modules
Extract SetupTypes/SetupHost from Setup.ts and move observation
helpers into ProcessOwnershipObservation/ProcessTree. Migrate all
importers including CLI commands. No re-export shims.
* refactor(runtime): centralize safe JSON parsing and preserve error causes
Add domain/safeJson.safeParseJson and migrate all raw JSON.parse
call sites. Name catch causes and preserve failure reasons instead
of swallowing; annotate genuine best-effort cleanup.
* fix(runtime): retain JSON parse error causes
* refactor(domain): consolidate canonical ordering and digest helpers (#624)
* refactor(domain): consolidate canonical ordering and digest helpers
Single owner for code-point ordering (domain/canonicalOrdering.ts)
and canonical JSON digests (domain/comparisonSemantics.ts). Delete
all local compareCodePoints/compareText/digestCanonical duplicates
and migrate every importer. No re-export shims.
* fix(ci): allow slower real browser startup
* chore(config): remove dead eslint, dedupe scripts, cacheable turbo tasks
Delete eslint.config.js (oxlint is the linter), drop lint:dead alias,
pin smol-toml, fold jscpd/scan:todos into check:pr, make test:run
cacheable, align oxlint ignores.
* fix(config): hash all test inputs for cached runs
* docs: fix architecture diagram and pretty-print tool catalog
Drop dangling REPLAY edges, add dotnet/reference/error/evaluation
nodes. Emit 2-space JSON from the catalog generator and regenerate.
* test: extract shared fixtures, drop knip carve-outs
Dedupe android/apple session tests, bundler adapter headers, and
reconstruction helpers into tests/support fixtures. Delete unused
type aliases and the knip ignoreIssues block. Lower jscpd threshold
2.7 to 2.5.
* refactor(app): split Setup and ProcessOwnership modules
Extract SetupTypes/SetupHost from Setup.ts and move observation
helpers into ProcessOwnershipObservation/ProcessTree. Migrate all
importers including CLI commands. No re-export shims.
* refactor(domain): consolidate canonical ordering and digest helpers
Single owner for code-point ordering (domain/canonicalOrdering.ts)
and canonical JSON digests (domain/comparisonSemantics.ts). Delete
all local compareCodePoints/compareText/digestCanonical duplicates
and migrate every importer. No re-export shims.
* fix(ci): allow slower real browser startup
## Changes
Related to #545 and the permission-system removal in #555.
- Upgrade the shipped skill to v24 and remove obsolete filesystem grants, per-call approval flags, Electron file-root configuration, and DMG approval flags. Calls follow the user-requested investigation directly. Keep setup plan confirmation, actual OS requirements, and process/archive lifecycle boundaries.
- Correct the passive browser guide: endpoint/scope come from requests; ordinary local URL queries are retained, while credentials remain redacted.
- Audit canonical tool effects: declare possible DMG process/temp-directory effects, mark fresh extraction non-idempotent, and mark comparisons of supplied captures/PNGs as closed-world. Align artifact-provider capability effects with temporary mount-directory writes.
- Retain non-read-only hints for calls that add Evidence to the session; document that annotations are hints and that clients control their confirmation UI. Do not mislabel session mutations as read-only to suppress prompts.
- Regenerate package, skill, MCP, and product metadata from source.
## Verification
- `npm run test:focused -- <11 affected test files>`: **40 tests passed**, including skill transaction/backup/idempotence, SDK tools/list annotations, actual local capture/PNG comparisons, artifact extraction/containment/cancellation, DMG launcher/cleanup seam, setup confirmation, browser MCP and scenario MCP, CLI catalog parity.
- `npm run check`: typecheck, lint, format, knip, package metadata.
- `npm run docs:check`: generated catalogs, skill metadata, documentation facts, completion ledger, error schema.
No local real Hopper/Ghidra run: their adapters and analysis operations are unchanged. Native macOS DMG behavior is covered locally through the launcher seam; no local macOS/hdiutil claim is made.
Real browser verification passed using existing Headless Chrome143.0.7499.4: actual CLI/stdio MCP,9,331,407-byte PNG, passive capture/source maps, and owned/external scenario cleanup. An initial full Chrome143 run failed the existing screenshot-height assertion (1397 versus1536); the dedicated headless-shell run passed the complete verifier without code changes. The verifier run-lineage field remained unavailable; no lineage-coverage claim is made. Browser download into `.codex` was blocked by CDN403, so the successful run used an existing browser without changing host configuration.
* fix(javascript): honor package exports condition order
Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>
* fix(javascript): resolve exports against Node's full condition set
The declared-order fix selected targets against {default, import|require},
but Node's active set for the resolver that owns installed packages also
includes "node" and "node-addons". Ordering only means something against the
full active set, so a package declaring {"node", "import"} resolved to the
wrong target, and a package declaring only {"import"} reported no target
where Node resolves ./node.cjs.
Nested condition objects and fallback arrays are also valid Node targets.
They are now flattened in Node's own order: a condition object stops at its
first active key, so a null or unmatched nested target ends the search, while
an array skips the entries it cannot resolve and concatenates the rest. Node
does not fall through a target whose file is absent, so the first flattened
target stands and its absence is reported rather than skipped.
A valid exports map that matches no active condition is reported as external
with the declared condition names, and one that selects an unsupported nested
or array target no longer borrows the "not valid package JSON" reason.
The differential test installs a real package and resolves the same bare
specifier through Node and through REA, mirroring file presence between the
filesystem and the inventory. 18 of the 25 cases fail without this change.
* style: apply Prettier to the conditional exports differential test
---------
Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
* fix(javascript): respect HTML base URL components
Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>
* fix(javascript): resolve HTML base href dot segments and gate base syntax
A relative HTML reference resolves against the base URL's directory, and that
directory drops a trailing "." or ".." segment rather than stepping through
it. Only a trailing "/" was treated as a directory, so <base href=".">
resolved against the artifact root instead of the document directory, and
<base href="sub/."> resolved against the parent of "sub".
The base href is also a second untrusted path input, but rejectDeclaration
only applied its admission rules to the declared path, so an encoded-traversal
or backslash base href relied on files-map confinement to stay safe. Both
inputs now share one admitsCanonicalPathSyntax predicate, and a local base
href is rejected with a reason naming the base href rather than a generic
declared-path message. External base hrefs are still reported as external,
so an encoded path on an unreachable origin keeps the more accurate reason.
7 of the new cases fail without this change.
* style: apply Prettier to the HTML base resolution changes
---------
Signed-off-by: Rudy Celekli <47457359+rudycelekli@users.noreply.github.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
* fix(comparisons)!: preserve unknowns across partial observations
Share absence and digest semantics, keep unobserved managed bodies unknown, and match unique managed type/name/signatures before structural fallback.
BREAKING CHANGE: Managed comparison metadata adds exact-signature matching and its count, and name_matching now reports exact-signature-fallback.
* fix(javascript): preserve projected result binding semantics
Share syntax-aware property reads and assigned-result resolution. Retain destructuring paths and downgrade downstream whole-result relationships instead of resolving nested or wrapped calls as aliases.
* fix(native)!: admit complete parser values and preserve typed failures
Decode Mach headers by named columns, validate complete slice keys and lipo alignment, and preserve codesign runtime flags and tagged parser errors. Rename the Ghidra test dossier fixture and connect fake-backed suites to real verification lanes.
BREAKING CHANGE: Native load-command results no longer contain the unused, always-null file_offset field.
* fix(process): preserve host identity and actionable boundary failures
Thread selected platform and environment through process and Doctor seams, stamp observed producer identity in Evidence, and retain PTY, filesystem, lease and lazy-provider failure causes. Drain cancelled lazy loads and omit exited descendants from verified lineage.
* fix(browser): preserve cleanup and document-transition evidence
Make V8 and Playwright teardown cancellation-aware, expose primary failures alongside incomplete cleanup, share frame-tree and navigation rules, and clear stale WebMCP registrations without pruning unrelated child frames.
* fix(adapters): align managed targets and typed CLI outcomes
Inspect managed PE/CLI targets independently of native provider selection, reuse successful managed selections, and keep evidence bound to the actual inspected target. Classify canonical CLI error envelopes and exhaustive setup/update/uninstall outcomes, audit registered CLI coverage, and assert platform-specific runtime results.
* docs: refresh boundary contracts and shipped roadmap behavior
morluto