Commit Graph
387 Commits
Author SHA1 Message Date
morluto 60ab4da329 fix(cli): correct completion options and setup guidance (#7851)
* fix(cli): align MCP doctor completion with its options

* fix(cli): explain zsh completion initialization

* fix(cli): include launcher timing in doctor completion

* style(cli): format doctor completion schema
2026-10-29 01:28:04 +08:00
gensokyo-dev c77735fa83 fix(setup)!: bind managed registrations to selected installation
Use one command owner for setup, client writers, Gemini policy and CLI defaults.
Migrate recognized runner registrations with backups and remove runner prewarm.
Retain unknown identities and exercise real offline npm, CLI and MCP workflows.

Fixes #7757

BREAKING CHANGE: managed MCP registrations use the selected absolute runtime
and REA entry script, including package-runner cache paths. Keep that installation
available or restore it before setup; unknown registrations require confirmed
manual repair. Setup no longer returns prewarm or emits its progress events.

Assisted-by: Reimu (gensokyo-skills:reimu-incident-triage)
Assisted-by: Kogasa (gensokyo-skills:kogasa-surprise-testing)
Assisted-by: Yukari (gensokyo-skills:yukari-boundary-analysis)
2026-10-28 11:34:28 +00:00
gensokyo-dev 3b242491a4 fix(cli): attribute keyed archive errors to archive argument (#7731)
* fix(cli): attribute keyed archive errors to archive argument

* test(cli): assert input-error projection reference reuse
2026-10-28 16:48:20 +08:00
gensokyo-dev 6a226bd092 fix(apple): validate keyed archive selectors consistently (#7728) 2026-10-28 16:01:17 +08:00
gensokyo-dev 0e4b806db1 fix(cli): preserve missing-selection Markdown token windows (#7726) 2026-10-28 15:23:00 +08:00
gensokyo-dev a0a1962e06 fix(cli): validate byte queries before opening targets (#7723) 2026-10-28 15:00:01 +08:00
5ae77656e7 feat(workflows): expose guided prompts through CLI and MCP (#6995)
* feat(workflows): expose guided prompts through CLI and MCP

* fix(workflows): address guided workflow review findings

* fix(workflows): preserve scoped contracts and actionable validation

* test(workflows): allow bounded CLI startup on shared hosts

* test(workflows): audit guidance effects and content provenance

* perf(workflows): defer rendering and separate catalog scope

---------

Co-authored-by: Deepak-Kambala <deepakkambala07@gmail.com>
Co-authored-by: gensokyo-dev <342580529+gensokyo-dev@users.noreply.github.com>
2026-10-28 14:12:39 +08:00
gensokyo-dev 3d5c73f35c fix(cli): retain JSONL parser diagnostics under token counting (#7705) 2026-10-28 11:48:31 +08:00
aa6f6436c9 feat(cli): add CSV and TSV analysis views (#7254)
* feat(cli): add CSV and TSV analysis views

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

* Update tests/boundary/cli/filteredArrayOutput.test.ts

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

* Update src/cli.ts

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

* fix(cli): address delimited export review feedback

* fix(cli): format delimited output block in cliResultOutput

* fix(cli): retain delimited view uncertainty and align completions

---------

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>
Co-authored-by: gensokyo-dev <342580529+gensokyo-dev@users.noreply.github.com>
2026-10-28 11:27:40 +08:00
PM baec375c34 fix(cli): validate outline-depth before numeric coercion (#7505)
Fixes morluto/rea#7425

Signed-off-by: pqminh27 <minh8a1hb@gmail.com>
2026-10-28 05:16:49 +08:00
PM 423d190026 fix(cli): preserve Markdown table edge spaces (#7506)
Fixes morluto/rea#7432

Signed-off-by: pqminh27 <minh8a1hb@gmail.com>
2026-10-28 05:16:28 +08:00
S1MonandS1Mon bcc6775dc1 fix(cli): reject non-decimal Android overload index tokens (#7493)
Android overload selection declared a plain number, so the CLI argument
parser coerced the raw token with Number before the schema ran. An empty
token therefore arrived as 0, and hexadecimal, exponent, signed, and
float spellings arrived as their numeric value, leaving both commands to
proceed to artifact admission on a selector the caller never wrote as a
decimal integer.

Reuse the existing decimal token parser that the other integer CLI
options already use. Omitted and explicit decimal zero keep their current
meanings, and the published schema for overloadIndex is unchanged.

Validation: npm run compile, the cli-boundary vitest project for
tests/boundary/cli/cliIntegerArguments.test.ts (56 passed), npm run
typecheck, npm run lint, npm run lint:typed, npm run format:check, npm
run metadata:check, npm run verify:architecture-guards, and npm run
knip:production. The new cases fail against the base source and pass with
the change.

Fixes #7430.

Co-authored-by: S1Mon <251732998+fgfsgsgvo@users.noreply.github.com>
2026-10-27 23:25:32 +08:00
gensokyo-dev 570abe95f2 feat(android): link native declarations to static JNI candidates (#7472)
Link original DEX native declarations to per-ABI function exports and relocated static JNI table candidates through shared CLI/MCP workflows. Preserve global attribution ambiguity, exact provenance, partial coverage and retained Evidence; default MCP delivery to bounded summaries with filtered/batch pages.

Use one immutable ELF relocation decoder with streaming IL2CPP materialization, cooperative bounded export/version parsing and bounded JNI state. Reuse validated session inventories without loading target libraries or executing JNI code.

Validation: relevant type/lint/build and parser/domain/public CLI/MCP regressions; genuine four-ABI NDK fixtures and independent library/slot oracles; actual JDK/JADX Conscrypt workflows with retained-source removal. Full measurements and limitations are recorded in docs/verification/android-jni-bindings-2026-10-27.md.

Closes #6403.
2026-10-27 18:53:22 +08:00
gensokyo-devand555aaditya 03f17cf41d feat(android): apply caller-selected R8 mapping evidence (#7456)
Apply caller-selected R8/ProGuard mappings to shared Android inspections, preserving raw identities, exact verification, ambiguity and provenance. Add retained summaries and bounded/cached parsing, with measured real R8/Conscrypt workflows and review fixes.

Fixes #6329.

Co-authored-by: 555aaditya <107977627+555aaditya@users.noreply.github.com>
2026-10-27 15:47:08 +08:00
morluto 4e67bc3999 refactor(analysis): consolidate selection ownership 2026-10-27 13:21:35 +08:00
gensokyo-devandHarsh 7e8f7f6101 feat(android): expose selected manifest component declarations (#7379)
Extend static manifest declarations and retain precise source locations and historical unknowns. Share bounded selected component views across CLI and MCP with complete parent Evidence.

Verified real ApiDemos, an AAPT2-built fixture, legacy Evidence, default-package metadata and relevant CLI/MCP contracts. Recorded whole-task token estimates, timing/resource limits and independent main-failure controls in the PR.

Co-authored-by: Harsh <johiyaharsh@gmail.com>
2026-10-27 12:37:10 +08:00
morluto 3d311d9eca fix(cli): report failed browser cleanup retries 2026-10-27 12:31:48 +08:00
morluto c4242cb85e fix(evidence): own standalone command finalization 2026-10-27 12:24:59 +08:00
morluto e334a13c79 fix(cli): merge mixed array filter selections 2026-10-27 12:14:36 +08:00
morluto 47a8000cce fix(cli): project nested array slices 2026-10-27 12:06:29 +08:00
morluto 9eb8ba2b29 refactor(cli): use builtin argument owner directly 2026-10-27 09:29:20 +08:00
morluto 329325049c refactor(cli): retain typed analysis outcomes through delivery 2026-10-27 09:16:02 +08:00
morluto 5cf7133f82 refactor(javascript)!: consolidate renderer and route ownership
Remove the derived package renderer property from new application graphs. Use renderer_declarations for source fields and package loads edges for the selected candidate; previously retained Evidence remains readable.
2026-10-27 09:05:24 +08:00
morluto 6d7e627783 fix(cli): preserve literal evidence in Markdown output 2026-10-27 09:04:11 +08:00
morluto 6b3a081f36 fix(flutter): retain snapshot cleanup ownership 2026-10-27 08:29:29 +08:00
morluto 567ea4b1e8 refactor(ownership)!: consolidate legacy aliases
Migrate schema, installer, ASN.1, and tooling consumers to their owning definitions. Remove the redundant CI task entry and the deprecated Cutter command-local JSON flag.

BREAKING CHANGE: Replace Cutter --json=true or --json=false with --json-output=true or --json-output=false. Bare --json still controls CLI result formatting.
2026-10-27 06:31:23 +08:00
morluto f68064e46c fix(evidence): exclude sensitive publication identities 2026-10-27 03:12:22 +08:00
morluto 347494f3ab fix(captures): preserve cleanup ownership and sensitive evidence 2026-10-27 03:02:38 +08:00
gensokyo-devandHarsH 6d5532a204 feat(web): page retained bundle endpoint observations and inferences (#7259)
Page retained web-bundle endpoint observations and inferences through shared CLI/MCP projections, preserving source identities, scoped unknowns, coverage and complete Evidence access.

Based on HarsH’s original implementation in #7213 (6b1d5d42). Real Chromium/CLI/SDK verification and whole-task cost limits are recorded in docs/verification/web-bundle-paging-2026-10-26.md.

Explicit user authorization permits leaving human-readiness declarations unchecked and bypassing reproduced main failures (ADB listing fixture, package catalog expectation, untouched APK verifier formatting). No human-review attestation is made.

Co-authored-by: HarsH <harshasalkar7@gmail.com>
2026-10-27 01:37:39 +08:00
Dery Ferdikaandgensokyo-dev aa6c1d49fd fix(mcp)!: require allowed hosts for non-loopback HTTP binds (#7172)
Require operator-declared hostnames before serving MCP HTTP outside loopback, preserving Host/Origin gates. Parse hostname identities once, share typed startup recovery across CLI/MCP, and announce an admitted client URL. Generated AgentEnv bundles declare their client/service names and validate DNS/HTTP name identity before export.

Validated through real packaged HTTP requests, direct SDK connection, compiled export refusals, 184 focused tests, static and documentation checks on the refreshed main integration. Final CI and review evidence is recorded in the PR body.

BREAKING CHANGE: non-loopback deployments require MCP_ALLOWED_HOSTS or rea mcp --http --allowed-hosts; bundle names must be unchanged HTTP hostnames within the 63-octet DNS label bound.

Co-authored-by: gensokyo-dev <342580529+gensokyo-dev@users.noreply.github.com>
2026-10-26 22:55:10 +08:00
morluto 2b84efe0da fix(contracts): align CLI omission and native capability coverage 2026-10-26 22:22:27 +08:00
b675073b73 feat(mcp): scope advertised tools by family (#7228)
Scope MCP discovery, setup, doctor, status and recovery guidance by selected tool families using one contract inventory and shared catalog identity. Preserve default discovery, canonical validation and complete Evidence.

Fixes #3246. Builds on #3026. Real libcrypto workflow verifies all 5,367 exports and identical complete Evidence. Static/source/build/docs/Windows/package/Greptile checks pass; ten assertions reproduced identically on clean main and feature across Node 24/22, with cancelled coverage explicitly unverified. Merge uses the user-authorized bypass for baseline failures and unchecked human-readiness declarations, without attesting human review.

Co-authored-by: 0xLLVEL <fakhrezan1@gmail.com>
Co-authored-by: Codebuff <noreply@codebuff.com>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-10-26 19:50:12 +08:00
morluto 36515a5c9b refactor(cli): derive desktop limits from the input contract 2026-10-26 15:33:59 +08:00
morluto 06655af306 refactor(evidence): centralize publication source collection 2026-10-26 14:25:50 +08:00
morluto 1fe1f1f8d6 refactor(managed): retire redundant verification facade 2026-10-26 14:14:26 +08:00
morluto 071a637a9f refactor(cli): share managed comparison finalization 2026-10-26 13:53:43 +08:00
morluto 991a240606 fix(cli): preserve script export evidence through shared finalization 2026-10-26 13:47:15 +08:00
b8ce3c74cd feat(native): make function matching allowance configurable (#7159)
Allow native matching representation budgets to be selected at runtime or launch while retaining the 96 MiB default and main shared-provenance accounting. Preserve actionable configuration recovery through the setting owner and verify complete CLI/MCP matches for 20k/50k synthetic inventories and real stripped LLVM 14/15 inventories.

Fixes #6406.

Based on #7112 by Kaoru0822; original authorship and co-author credit retained.

Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-26 02:22:32 +08:00
gensokyo-dev f69c52a1cf feat(native): page retained load-image observations (#7134)
Add optional native load-image summary delivery and retained selected-row pages through shared CLI/MCP analysis views. Preserve source verification, provenance, unavailable collections, exact row identity and opt-in byte/check payloads.

Preserve direct caller paths during shared CLI summary publication and cover raw/DOL projection contracts through the actual SDK. Real Ghidra ELF CLI/MCP captures, retained and file-backed pages, focused regressions and static checks passed; the PR records existing main schema failures and the JavaScript resource-recovery CI uncertainty.
2026-10-25 21:50:42 +08:00
Kaoru0822andClaude Opus 5.5 e06be06530 fix(cli): report JSON Lines selection refusals as caller errors (#7124)
* fix(cli): report JSON Lines selection refusals as caller errors

A --format jsonl refusal because the selected value is not a record
collection is the caller's output selection, not unreadable analysis
output. Report it as invalid_request/invalid_input that names the
selection and its observed shape, keep the --format json /
--filter-output remediation, and drop the rea doctor advice.

AnalysisInputError gains an optional producer remediation, mirroring
the other refusal classes. The JSON Lines owner examines its documented
boundaries once for both admission and refusal facts.

docs/cli.md now states that columnar results such as
inspect-sqlite-database --table rows are not record collections.

Fixes #7110

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(cli): carry JSON Lines refusal facts as structured observations

JSON Lines refusals now put the location and shape of each refused value
in details.issues[].observed, and the message is built from those facts.
Tests assert the classification, issue path, observed facts, and the
shared remediation constant instead of fixed sentences.

The filtered analysis-view export check now uses a non-empty request
and compares the emitted rows with the unfiltered export.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-25 05:26:13 -07:00
fc43e285ea feat(browser): retain compact scenario summaries and selected views (#7120)
Retain complete browser scenario Evidence while delivering compact summaries and selected step, event, transaction and text views through shared CLI/MCP workflows. Preserve initial CLI failures across cleanup retries and validate with real Chromium/TodoMVC.

Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-10-25 19:03:06 +08:00
RRFZ cc146042d1 fix(cli): preserve literal Markdown table facts (#7073)
* fix(cli): preserve literal Markdown table facts

* test(cli): retain capacity diagnostics through Markdown escaping

* fix(cli): keep intraword underscores readable in Markdown tables

Underscore runs between letters or digits cannot open or close CommonMark emphasis, so escaping them only adds noise to identifiers such as source_index and invalid_request in raw Markdown. Escape underscore runs only at word boundaries and restore the original diagnostic assertions.
2026-10-25 13:55:18 +08:00
Vinícius Andrade 4ed33efb0c fix(cli): format arrays of empty objects without keys as JSON (#7058)
When formatting arrays of objects that have no own enumerable keys as
Markdown, formatObjectTable derives empty headers and outputs a malformed
table with an invalid delimiter row. Require at least one item with keys in
isObjectArray and fall back to JSON serialization when headers are empty.

Fixes #7057
2026-10-25 10:46:15 +08:00
morlutoandAdolanium cb26e8ca63 fix(contracts): share ADB limits and preserve Rosetta register facts
Use the domain-owned activity extra count in CLI parsing and advertisement. Preserve nested Rosetta registers at the selecting parser and qualified register projection, sharing the existing aggregate budget.

Port the Rosetta work from Adolanium commits 1889ac153 and c9e93bd88 in #6976, including morluto follow-up 07fa932ee. Add malformed-container and mixed-thread budget controls. CLI/MCP coverage uses a recorded ReportCrash excerpt in an authored report, without generating a native crash or contacting an Android device.

Refs: #6291, #6976, #6977

Co-authored-by: Adolanium <94890352+Adolanium@users.noreply.github.com>
2026-10-25 09:49:26 +08:00
morluto f2fa951c00 fix(cancellation): retain caller reasons across digest and startup 2026-10-25 07:31:31 +08:00
Ahmedandmorluto 4b045e8f2f feat(cli): accept stdin for structured JSON request documents (#5486) (#7040)
* feat(cli): accept stdin for structured JSON request documents (#5486)

* fix(cli): preserve cancellation and admission for JSON stdin

---------

Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
2026-10-25 05:10:29 +08:00
ShuaixinHuang ce4e48ccae fix(cli): exclude inherited values from Markdown rows (#6984)
* fix(cli): exclude inherited values from Markdown rows

* test(verifiers): follow shared command output and identity
2026-10-25 03:33:25 +08:00
Xinjian Wang 6a96f4fa4a fix(setup): materialize the pinned package-runner cache before the first client start (#7032)
* fix(setup): materialize the pinned package-runner cache before the first client start

Package runners key their package cache by the requested spec, so the
entry installed for the @latest invocation that ran setup cannot serve
the pinned rea-agents@<version> registration. The first client start
installed that entry inside the client's MCP startup deadline and timed
out (three consecutive 30 s timeouts observed in one client log; a
controlled cold install with every tarball already cached took 22 s).

Setup now materializes the pinned entry once after applying
registrations: best-effort, bounded by a timeout, launched from a
neutral working directory, and non-fatal on failure. The setup result
carries the prewarm summary, interactive output prints a warning when
the step fails, and direct launcher registrations keep skipping it.

Fixes #7027

* fix(setup): gate prewarm to applied registrations and supervise the runner tree

Address review findings on the prewarm step:

- Gate the prewarm on at least one applied client registration
  (configured_<client>), so an empty plan or a skill-only run never
  installs into the package-runner cache; the step now only follows
  registrations the user approved in this transaction.
- Replace execFileOutput with a supervised spawn: on timeout the whole
  runner tree stops through cleanupWindowsProcessTree on Windows and a
  process-group kill on POSIX, because killing only the direct child
  leaves npm holding the inherited output pipes past the deadline.
- Emit started and completed progress events around the prewarm so an
  interactive cold install no longer looks like a frozen setup.

* fix(setup): forward terminal interrupts to the detached prewarm runner

A detached POSIX package-runner group no longer receives the terminal's
Ctrl-C, so setup could exit while the runner kept installing in the
background. The supervised launch now registers SIGINT and SIGTERM
forwarding for the duration of the prewarm: the runner tree is stopped
through the same family cleanup as the timeout, and the default
termination is restored afterwards. An interrupted launch reports a
failure reason instead of a hang.
2026-10-25 03:32:58 +08:00
morluto faf219e90b refactor(application): use current Evidence and CLI contracts
Require the immutable Evidence read APIs already implemented by production owners. Remove the detached-only compatibility fallbacks and forwarding helpers, and bind consumers directly to their owner. Preserve editable detached exports and existing snapshot semantics.

Use the shared canonical CLI error classifier for process commands instead of reinterpreting their projection. Validation: 172 focused application and process tests, build, static checks and documentation checks passed using local fixtures.
2026-10-25 02:44:21 +08:00
morluto 12f6e0974c fix(cli): retain Cutter discovery through shared finalization 2026-10-25 01:34:37 +08:00