* test(mcp): open stdio clients through the shared local-tools fixture
Twelve files built their own StdioClientTransport and Client for
`rea mcp`. Those clients never listed tools, so the SDK did not
validate structured results against advertised output schemas, and each
file repeated transport setup, stderr draining and close ordering.
Use connectLocalToolsMcp, which lists tools, validates replies,
silences logging, leaves deep providers unconfigured and owns cleanup.
Per-test clients register test-scoped cleanup; module-level clients
collect cleanup for afterAll.
* test(mcp): keep failed file-scoped MCP cleanup owned
The three module-level clients removed every cleanup callback before
running them, so a failed cleanup lost its only handle. Add
fileLocalToolsMcp, which connects before the file's tests and removes
each cleanup only after it succeeds, and use it in those files.
Require the native node owner's content digest instead of borrowing an
observation artifact digest, which can identify the containing ASAR. Keep
unavailable nodes and their path/provenance/partial facts in the trace,
without a false actionable target or native Evidence link. Remove the old
fallback and allocate the query index only for eligible native targets.
Verify real public CLI/stdio MCP workflows, known/missing companion inputs
and shipped Joplin controls. Preserve reproducible scripts, source pins and
compact correctness/resource/token records without archiving applications.
Fixes#3926. Part of #4027.
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
morluto