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22f28644fe |
feat(artifacts): inventory and extract Deno compile executables (#8527)
* feat(artifacts): inventory and extract Deno compile executables Adds Deno standalone artifact support for Mach-O, ELF, and PE carriers, exposing virtual files, entry points, recorded options, and file digests without running the executable. Extraction uses the existing safe output tree, preserves symlink targets as metadata, and assigns indexed paths to unsafe or oversized names. Environment-file values and certificate bytes remain in local Evidence; npm snapshots are reported by length without decoding. The documentation describes supported layouts, parsing limits, and refusal behavior. * fix(artifacts): resolve nested Intel Deno carriers to the enclosing app The backward trailer search stopped at the first confirmed sentinel, so an Intel app storing another Intel Deno executable as a virtual file reported the inner app. Search to the slice start, drop sentinels inside a confirmed payload, and fail closed on side-by-side trailers that differ. Correct the docs on retained environment values and generated regions. * fix(artifacts): keep Deno coverage, remote paths and PE resources truthful Report unknown coverage when the virtual filesystem cannot be listed, keep resolved specifiers when another remote ID is missing, and percent-encode characters in remote paths that a Windows destination would refuse. Reject a directory at the PE resource language level, and correct the guide's description of colliding generated regions. * fix(artifacts): normalize Deno remote escapes so hex case cannot collide Uppercase every percent escape in a generated remote path, so specifiers that differ only in escape case reach the path registry as one name and the second gets an indexed path instead of colliding on a case-insensitive disk. * fix(artifacts): fail closed on truncated enclosing Deno trailers and encode reserved remote path characters The Intel trailer scan rejected an overlong sentinel before reading its marker, so a truncated enclosing app vanished and the nested app was reported. Read the marker first and fail closed when a confirmed overlong trailer encloses another trailer. encodeURIComponent leaves `*` alone and the sanitizer covered only part of the Windows reserved set. remoteDestination now encodes the whole set once as uppercase percent hex; source_path keeps the original. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01KuWHGvzJkrhCqjtEHUwqyH * fix(artifacts): defer truncated Intel Deno trailer failure until enclosing trailers resolve A damaged Intel asset stored before a valid one inside a valid app made the backward trailer search fail before it reached the outer trailer. Hold that failure until the search ends and drop it when a confirmed enclosing trailer holds the sentinel as data. * fix(pe): fail closed when a resource type branch is unreadable beside a found name namedResourceTargets skipped a type branch whose names directory, or a name entry whose string, could not be read. A duplicate RT_RCDATA entry pointing out of bounds therefore vanished once another branch matched, and locatePeResourcePayloads returned only the readable ranges while parsePeResources rejected the same tree. The walk now records unresolved branches. hasPeResourceName still reports false for a tree that never reaches the name, but once locatePeResourcePayloads finds the name it raises a format failure if any branch was left unresolved. * fix(artifacts): skip Intel Deno sentinels that a native segment maps A non-Deno x86_64 Mach-O that stores an Intel Deno executable in __DATA had the asset's trailer promoted to the root application, because the backward sentinel search never checked who owned the bytes it scanned. locateMachOSlice now records the file ranges of every segment other than __SUI and __LINKEDIT (libsui extends __LINKEDIT over the trailer), and the Intel search skips any sentinel inside one of them. A slice whose load commands do not frame stays with native inventory, since ownership cannot be shown there. * fix(artifacts): reject a universal Deno image with an unreadable sibling slice The universal Mach-O locator skipped any slice whose load commands could not be read or framed, and any slice with a FAT range issue. When another slice confirmed Deno, that slice was reported as the whole image, so a sibling declaring a different Deno application went unexamined. locateMachOSlice now reports why part of a slice was not examined (unreadable or unframed load commands, a truncated slice, or the Intel sentinel allowance). locateMachO collects those reasons for every declared and hidden slice and fails closed once any slice confirms a Deno section. With none confirmed, the image stays with native inventory as before. * fix(scripts): supervise the Deno verifier version check Run `deno --version` through the verifier command owner with a deadline instead of raw execFile, and close the owner when the version is refused. * fix(artifacts): keep unconfirmed Deno carriers native and fail truncated Intel trailers An ELF SUI note whose descriptor is too short for the full d3n0l4nd name now stays unconfirmed instead of failing closed; failures after the name matches still fail closed. Every marker-confirmed Intel trailer whose payload runs past the slice is now kept until the backward search ends and fails unless an enclosing payload contains it, so an Intel Deno app missing its last byte reports a Deno failure instead of native inventory. The Deno MCP boundary test now calls open_binary and inspect_artifact through artifactMcpCall, as docs/testing.md requires. * test(deno): drop source-text checks from verifier pin test Keep the wrong-version subprocess check, which covers the pinned release through behavior, and stop asserting on the verifier script's source spelling. * test(deno): close readers in finally in symlink and cancellation tests A failed assertion or read error in either test skipped reader.close(), leaving the file open while temp-directory cleanup ran. Both tests now close the reader in finally, as CONTRIBUTING.md requires. The closed-reader assertion in the symlink test stays after the finally. * docs(specs): add deno-standalone spec, plan and tasks Add docs/specs/artifacts/deno-standalone/ with spec.md, plan.md and tasks.md for the Deno compile executable reader, as AGENTS.md requires for a feature, and list them in the specifications index. * docs: list the Deno compile guide in the documentation sidebar * fix(deno): confirm the d3n0l4nd section before claiming Mach-O damage A __SUI segment alone no longer makes later load-command damage Deno's. A Mach-O whose __SUI segment holds only a differently named section now stays absent and keeps native inventory, while damage seen before or beside a confirmed d3n0l4nd section still fails closed. * fix(deno): keep a slice with an unparsed segment command unread A Mach-O segment command that frames but cannot be parsed may be the __SUI segment, so the slice is no longer treated as fully examined. A universal image whose other slice confirms Deno now fails closed instead of letting that sibling supply the whole inventory, and with no confirmed sibling the image still keeps native inventory. * fix(deno): confirm an ELF SUI note before rejecting its length A SUI note whose descsz runs past its note table was recorded as plain damage before its descriptor name was read, so a malformed Deno carrier fell back to native inventory. The owner and the d3n0l4nd name prefix are now read within the table apart from the claimed extent, and a confirmed note with an oversized extent fails closed. * fix(deno): confirm a truncated __SUI section record by its name A section record cut short after its 16-byte name was skipped, so a damaged Deno carrier fell back to native inventory. The name is now read apart from the rest of the record, and a truncated record that names d3n0l4nd fails closed. The range checks for a confirmed record move into their own helper. * fix(deno): reject nonzero bytes after the last ELF note When fewer than 12 bytes remained in a note table after its last note, the walk stopped without looking at them, so a Deno note was selected with complete coverage beside unaccounted data. The remainder is now read: zero padding is accepted, and nonzero bytes are recorded as damage, which fails closed once a SUI note is confirmed and otherwise leaves the ELF to native inventory, matching the native note parser. * fix(deno): validate FAT slice identity before choosing the search The locator took a universal slice's CPU type from its FAT row, so a row that called an x86_64 slice arm64 skipped that slice's Intel trailer and let the arm64 payload stand for the whole image. Each slice's header is now checked against its row with validateFatSliceIdentity. A mismatch leaves the slice unread, so a universal image whose other slice confirms Deno fails closed. The Intel fixture header now states CPU_SUBTYPE_X86_64_ALL so its FAT rows can match it exactly. * fix(deno): check the Intel trailer marker before judging its length A trailer length word of 2^53 or more was dropped before its d3n0l4nd marker was read, so an enclosing app with that length was skipped and a nested app's range stood for the whole image. The marker is now read first, and a marker-confirmed trailer whose length runs past the slice, safe or not, joins the deferred truncated candidates and fails closed unless an enclosing trailer holds it as data. * fix(deno): count short ELF note tables against the note allowance A note table shorter than one note header made a read of its trailing bytes but counted no note, so many distinct tiny tables could force one sequential read each past the 256-note allowance. Every nonempty table now counts at least one entry, both in the up-front estimate and while scanning, so an image past the allowance records the limit instead of reading every table. The trailing-byte check moves into its own helper. * fix(deno): fail closed on ELF extended section numbering beside a SUI note A zero e_shnum with a nonzero e_shoff moves the section count into section zero, so the section table was skipped and its SHT_NOTE tables were never compared. Record it as damage, as PN_XNUM already is, so a confirmed SUI note fails closed instead of reporting full coverage. * fix(deno): keep undersized Intel trailers until enclosing ownership is known A trailer length word below 8 was dropped before its d3n0l4nd marker was read, so an enclosing app with a length of 0 to 7 was skipped and a nested app's trailer was selected as the root. The marker is now read first, and a marker-confirmed trailer too short to hold it is kept as malformed and fails closed unless an enclosing trailer holds it as data. * fix(pe): treat non-directory RT_RCDATA branches as unresolved A duplicate typeId root entry whose target is a data entry was skipped without marking the walk unresolved, so locatePeResourcePayloads returned the readable named resource as complete. Route non-directory type branches through the same unresolved path as unreadable names directories so the Deno reader fails closed. * fix(deno): fail closed on a zero-fill d3n0l4nd Mach-O section denoSectionRange admitted the declared offset and size of a confirmed __SUI,d3n0l4nd record without checking its section type, so a S_ZEROFILL, S_GB_ZEROFILL or S_THREAD_LOCAL_ZEROFILL section could be read as a file payload while MachoImage reports it as not file backed. Reject zero-fill types with the shared isMachoZeroFillSection predicate before assigning a physical range. * fix(deno): bound the d3n0l4nd Mach-O section by its segment file extent denoSectionRange checked a confirmed __SUI,d3n0l4nd record only against the slice and file bounds, so a section reaching past its segment's fileoff/filesize was still read as a complete payload while MachoImage reports the same section as not file backed. Reject a section outside its enclosing segment's file extent before admitting the physical range. * style(deno): apply oxfmt to the DenoStandaloneLocation embedding union * fix(artifacts): preserve Deno carrier ownership * fix(artifacts): admit Deno parent segments * fix(deno): preserve native segment ownership * test(deno): cover mismatched Mach-O segment widths --------- Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> Co-authored-by: morluto <76467478+morluto@users.noreply.github.com> |
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a67525cdf1 |
docs: organize canonical documentation layout and verify new pages (#2791)
* docs: organize canonical documentation layout (URGENTE) Group all existing authored guides by domain and ownership, expose complete navigation, and preserve their public routes. Update physical path consumers and release configuration while retaining historical records. Document domain-based specs and ADR slugs without global numbering. Co-Authored-By: Codex <noreply@openai.com> * fix(docs): honor home layout in all-page route verification * style: format reviewed source changes * fix(docs): preserve routes and navigation cache inputs * fix: repair the static-check failures on the default branch (#2895) * fix: repair the static-check failures on the default branch The default branch fails its own required `Static checks` job three ways, so every pull request reports that job as failed regardless of its own change. - `npm run format:check` reports `src/domain/functionComparison.test.ts` and `src/ida/IdaOperationRunner.ts`. - `npm run lint` reports a duplicate `import { join } from "node:path"` in `tests/boundary/mcp/ghidraInventoryMcp.test.ts` (lines 4 and 17). - `npm run typecheck` reports `format: "devin"` missing from the client format union in `src/application/SupportedClients.ts`, and an unchecked index in `tests/boundary/cli/clientProfileLifecycle.test.ts`, whose pair array is inferred as `string[][]`. Apply the pinned formatter, drop the duplicate import, list the `"devin"` format that its own definition already uses, and mark the pair array `as const`. Validation: `npm run check:fast` and `npm run format:check` pass. * fix(setup): keep Devin on the JSON configuration dialect --------- Co-authored-by: 吴佳浩 <wujiahao@supremind.com> Co-authored-by: morluto <76467478+morluto@users.noreply.github.com> * fix(docs): update links after guide relocation * docs: correct verified documentation route counts * fix(docs): update browser capture guide link after move (#2820) Refresh gettext protected-link comments alongside the authored href. Co-authored-by: Codex <noreply@openai.com> * fix(docs): include http3 lab in stable routes * fix(docs): preserve historical release evidence and links * fix(ghidra): restore Windows verifier identity import * docs(wakaru): preserve pinned upstream policy link * docs(index): retain recently added guide links * docs(mcp): preserve parent retention clarification * fix(cli): preserve standalone import guidance * fix(test): preserve translated guide link drift coverage --------- Co-authored-by: Matheus Breguêz <matbrgz@gmail.com> Co-authored-by: Codex <noreply@openai.com> Co-authored-by: morluto <17176810+morluto@users.noreply.github.com> Co-authored-by: 吴佳浩Alben <35291372+XiaoBinGan@users.noreply.github.com> Co-authored-by: 吴佳浩 <wujiahao@supremind.com> |
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a7574d4274 |
fix(filesystem): settle a Windows ChangeTime before recording a baseline (#8979)
* fix(filesystem): settle a Windows ChangeTime before recording a baseline Windows advances a file's ChangeTime shortly after it is written while security components attach catalog and file-hash extended attributes. A baseline captured during that advance disagrees with the next observation, so an untouched file was reported as changed: "Root artifact changed before inventory" and "Selected input changed while being read". Dropping ctime on Windows is not an option because it is the only field that catches a same-size rewrite whose modification time was restored. Instead, keep ctime at full strength and stop capturing it mid-flight: on win32 a ChangeTime still inside the drift window is observed again until two consecutive observations agree, and the settled value becomes the baseline. Applied where a baseline is captured and later compared: openRegularFile's admitted metadata and the inventory root snapshot. The exhaustive process capture walk is left alone, since settling there would delay every freshly written file in the tree. Refs #8975 Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com> * fix(filesystem): wait out the drift window instead of a repeated value Settling on two matching observations was not enough. Two reads taken before Windows performs its delayed ChangeTime update agree with each other and disagree with every later one, so an unchanged file still failed a later check: the reported drift lands 0.3-1.0 s after the write, well past a pair of reads 25 ms apart. Decide on the observation's age in the drift window instead, and keep observing until the ChangeTime itself has aged out. Both the first read and the empty-observation path now go through the same window check. The window-exit test could not fail before: its clock was frozen, so the window never closed and the exit branch never ran. Advance the clock while sleeping and cover a match that precedes a delayed update. Refs #8975 Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com> * fix(filesystem): configure Windows ChangeTime settle limits REA_WINDOWS_CHANGE_TIME_DRIFT_MS, REA_WINDOWS_CHANGE_TIME_SETTLE_POLL_MS, and REA_WINDOWS_CHANGE_TIME_SETTLE_MAX_POLLS keep today's 2000 ms, 25 ms, and 40-poll defaults. Invalid values name the setting, current value, source, and range, and say to restart REA. * fix(filesystem): settle on the selected environment and stop when cancelled `settleChangeTimeBaseline` resolved its limits from `process.env`, but the inventory already carries the environment its owner selected. A Windows runtime with explicit settle settings therefore ran on ambient values or the defaults, and an invalid ambient value could fail a runtime whose own configuration was valid. `scanCanonical` now passes `options.environment` through. The wait loop also never observed the owning operation's signal, so a cancelled inventory could keep polling for the whole drift window — up to a minute at the configured maximum — and closing the artifact scope waited on it. The loop now checks the signal before each poll and after the sleep, and both call sites pass theirs. Refs morluto/rea#8979 * fix(filesystem): keep the caller's typed error on cancellation Checking the signal was not enough: `throwIfAborted` threw the raw `signal.reason`, which `openRegularFile` passed through unchanged. Its callers recognise cancellation through `RegularFileOperationCancelled`, so a cancelled admission surfaced as an `ArtifactReaderFailure` with reason `io` instead of a cancellation. Let the seam supply the error a caller matches on, and have `openRegularFile` pass its own cancellation type. Refs morluto/rea#8979 * fix(filesystem): keep inventory cancellation typed during ChangeTime settle scanCanonical passed the abort signal into settleChangeTimeBaseline without a cancellationError, so an aborted inventory threw the raw AbortError and analyze reported execution_failure. Inventory now throws ArtifactReaderFailure reason cancelled, which callers already translate as cancellation. * fix(filesystem): skip ChangeTime settling for private PYZ images External admission still waits out a fresh Windows ChangeTime. A private image REA just wrote is recorded as written, so a compressed PYZ spool does not add about a second per image. --------- Co-authored-by: 2SinceJuly <202121119+2SinceJuly@users.noreply.github.com> Co-authored-by: Claude Sonnet 5 <noreply@anthropic.com> Co-authored-by: Cursor Agent <cursoragent@cursor.com> Co-authored-by: morluto <76467478+morluto@users.noreply.github.com> |
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67552d56cc |
docs(limits): say setup forwards the selected MCP response budget (#8342)
The design guide said the setup allowlist does not copy REA_MCP_MAX_RESPONSE_BYTES, but SELECTED_REGISTRATION_SETTINGS includes it and setup forwards an explicit selection, as the client guide states. Fixes #7420 |
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85013da0ce |
fix(cli): describe one-shot timeouts for an invocation whose session has ended (#8535)
* fix(cli): describe one-shot timeouts for an invocation whose session has ended A one-shot CLI analysis that reached a provider deadline told its caller that the Ghidra session remained usable and reported a runtime-editable limit applying to the next operation, although the command had already released its provider session and runtime. The shared error projection now takes an explicit caller lifetime. Providers keep guidance that holds only for a continuing caller (session reuse, same-session runtime updates) apart from the request outcome, and the presentation adds it only for a continuing caller. One-shot owners (runDirectAnalysis, runProviderAnalysis, finishAnalysisCommand and the JavaScript application command) project for the invocation: details.limit reports scope rea-invocation, applies_at next_invocation and the launch environment seed, and the remediation leads with that setting for a new invocation. MCP output keeps its runtime-update and same-session guidance. Covers the Ghidra decompile timeout, decompiler failure, regex stack exhaustion and startup timeout, the shared regex deadline, the Kuna decompile timeout and the Hopper startup timeout. Fixes #8311 Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> * fix(cli): project composed child failures for the caller lifetime Cleanup composition embedded its primary and cleanup failures as continuing-caller projections, and baked the primary's message and the cleanup's remediation into the composed error. A one-shot command whose Ghidra startup timed out while shutdown also failed therefore still reported a rea-runtime limit and update_analysis_settings in details.diagnostics.primary_error. childFailureDiagnostics now snapshots each embedded child at composition for both lifetimes when its projection depends on the caller, so cleanup history keeps its composition-time state and the final projection selects the caller's form. composedCallerGuidance re-attributes message and remediation with their continuing-only parts kept separate. Error copies and redaction keep the invocation diagnostics. The Hopper startup timeout now carries its continuing guidance on the error like the other producers. Invocation limits keep agent_editable and rea_restart_required, with values that hold for a new invocation, so only scope and applies_at change and environment is added. In existing-project mode a decompile timeout or a cancelled session now says the next session copies and opens REA_GHIDRA_PROJECT_PATH again rather than repeating import and analysis. Tests compare delivered guidance with the owning formatters and constants instead of freezing prose. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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60c0cf977a | docs: clarify recovery for valid lookup failures | ||
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8188497f13 |
feat(artifacts): inspect and extract Bun standalone module graphs (#6998)
* feat(artifacts): inventory and extract Bun standalone executable module graphs Adds a Bun standalone artifact reader for Mach-O, PE, ELF and appended trailers, supporting the 36-byte and 52-byte module record layouts. It preserves module names, entry-point details and raw metadata, and exposes contents, sourcemaps, bytecode and module-info as separate entries for safe extraction without executing the binary. Parsing rejects malformed or ambiguous graphs and enforces module-count, retained-byte and expansion limits. Adds synthetic parser tests, CLI and MCP coverage, agent skill guidance, and a verification script for Bun-produced executables. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_016y53PdpyMAp9RSW65fatHe * fix(artifacts): bound Bun section probes and reject truncated sections Split Bun recognition into a bounded probe that reads only section headers, length prefixes, and the Offsets/trailer suffix, and a single payload load used by the reader. Inventory classification and extraction admission no longer allocate the whole graph. Match ELF `.bun` section names by comparing only the name bytes and terminator, so many headers sharing one long name cost constant work each. Reject sections whose declared extent ends past EOF instead of reading a silently shortened window. Launch Bun, Docker, and REA in the standalone verifier through the shared owned verifier commands, and release the runtime root only after those command families have settled. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_016y53PdpyMAp9RSW65fatHe * style(artifacts): format Bun reader integration * fix(contracts): describe static Bun inventory facts * fix(artifacts): bound Bun metadata reads and combined path growth --------- Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> Co-authored-by: gensokyo-dev <342580529+gensokyo-dev@users.noreply.github.com> |
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b8ce3c74cd |
feat(native): make function matching allowance configurable (#7159)
Allow native matching representation budgets to be selected at runtime or launch while retaining the 96 MiB default and main shared-provenance accounting. Preserve actionable configuration recovery through the setting owner and verify complete CLI/MCP matches for 20k/50k synthetic inventories and real stripped LLVM 14/15 inventories. Fixes #6406. Based on #7112 by Kaoru0822; original authorship and co-author credit retained. Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com> Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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e9b21aadc5 | docs(settings): explain runtime design and provider recovery | ||
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f3ed1657f8 |
feat(mcp): support runtime analysis limit recovery (#7049)
* feat(mcp): support runtime analysis limit recovery * refactor(config): remove unused limit re-exports * fix(android): keep fixture release metadata dependency-free * fix(settings): preserve provider budgets and recovery facts * fix(tests): resolve lint plugins from their repository owner * refactor(mcp): verify guidance delivery without frozen wording * fix(android): align availability with runtime timeout * test(recovery): assert limit facts instead of frozen wording * fix(mcp): share runtime settings with the default JADX provider * test(mcp): bound acknowledgements and release held work on failure * fix(catalog): declare runtime settings tools as MCP-only |
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5ea2c280b8 |
refactor(doctor): retain parsed configuration diagnostics
Return native admission issues and an explicit Hopper timeout result from the configuration owner. Doctor consumes those parsed facts instead of raw timeout text plus a separate issue list. Reuse a successful aggregate parse; validate the individual timeout independently when other settings reject it. Preserve aggregate error precedence, JEB isolation, omission, constraints, causes and provider scope. Keep partial diagnostics when unrelated NUL, loader arguments, language selection or timeout settings are invalid. Validation: configuration and Doctor workflow regressions, mixed-invalid settings, full static/docs checks. No installed provider was exercised. |
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0d596fa8f7 |
docs(limits): describe how to design admission recovery (#6368)
* fix(reconstruction): dedupe residual unknown ids with uniqueSorted Merged obligation candidates called uniqueBy, which is not defined, so the project did not typecheck. String ids already use uniqueSorted. Co-authored-by: morluto <morluto@users.noreply.github.com> * docs(limits): describe how to design admission recovery Add a short contributor guide for named defaults, settings, recovery text, and the agent recovery ladder, and mirror that ladder into the authored skill. Co-authored-by: morluto <morluto@users.noreply.github.com> * fix(hopper): pass distribution readers into install-host tests systemLinuxHopperInstallHost now requires the caller's distribution reader. The Linux install tests still passed only the environment, so typecheck failed. Co-authored-by: morluto <morluto@users.noreply.github.com> * docs(limits): name the parser doctor shares with startup Co-authored-by: morluto <morluto@users.noreply.github.com> * test: align pcap, storage, and regex fixtures with current contracts Source and portable CI failed on fixtures that still described the previous pcap client identity, legacy storage fingerprints, and the old regex deadline sentence. Co-authored-by: morluto <morluto@users.noreply.github.com> * docs: link repository experiments outside the built site --------- Co-authored-by: Cursor Agent <cursoragent@cursor.com> Co-authored-by: morluto <morluto@users.noreply.github.com> |