* refactor: prune internal seams and preserve configuration ownership
* fix(setup): keep YAML aliases and inherited registration settings on refresh
- Reuse an unchanged YAML collection only while every alias in it still
resolves after the edit; otherwise rebuild it so the alias becomes its
value. A sibling anchor replaced or moved in the same refresh no longer
leaves an unresolved alias in Hermes or Goose output.
- Keep a connection selector whose existing value already chooses stdio
(for example an inherited Hermes transport: stdio) instead of superseding
it; remote selectors are still replaced. Explicit stdio selectors are
therefore no longer rewritten (Kimi expectation updated).
- When the whole Hermes registration is inherited through a merge,
override it with that merge and write only the changed fields.
* fix(setup): edit registration fields whose YAML key is an alias
A key written as an alias to a string scalar (for example *field with
field: &field env) was treated as a source-only key, so any change to
its value was refused in Hermes and Goose. Resolve such keys to their
string, keep the aliased spelling while its anchor survives the edit,
and write the plain key when the same edit rebuilds the anchor.
* test(process): bound cleanup-boundary waits and always release gates
Both cancellation tests awaited a bare started promise and released
their gates only on success, so a missed boundary waited for the outer
deadline and could leave cleanup parked. Use awaitAcknowledgement and
release and join the cleanup in finally.
* fix(setup): repair only aliases an edit leaves unresolved
Replace the pre-edit alias survival guess, which expanded aliases to
sibling anchors that survive unchanged, with an exact repair: record
what each alias in the replaced value resolves to, write the edit, then
replace only aliases left without a preceding anchor by that value.
- Keep an aliased key's source position, so its anchor stays ahead of
later aliases.
- Treat an aliased key as its string only when no other key in the map
resolves to the same string; an ambiguous one stays guarded.
- Override an inherited Hermes registration only when the requested
entry keeps every inherited field, so an explicit replacement can drop
remote selectors.
* fix(setup): repair aliases whose binding an edit changes, keeping comments
An alias whose own anchor was removed could resolve to an earlier anchor
with the same name and silently change value. Record the node each alias
resolved to and repair any alias that no longer resolves to that node.
Carry the alias's comments and spacing onto the repaired value.
* test(setup): split the Hermes anchor and merge refresh cases
* fix(setup): refuse removing an overridden key its merge would restore
The merge-retention check skipped keys the mapping also overrides, so
dropping such a key (for example a remote url during an explicit stdio
replacement) let the retained merge restore it. Check removal before
skipping overridden keys, so the edit is refused with the existing
message instead of producing a registration that cannot be applied.
* refactor(cli): run one-shot commands through one shared owner
scripts/rea.mjs and the test CLI session worker each implemented the
one-shot command sequence: argument normalization, output admission,
configuration errors, version documents, the Amp scope refusal, and
result delivery. The worker copy had drifted: it never rendered
formatted version reports or the Amp refusal.
Move the sequence into src/cliOneShot.ts. Both callers supply a host
for their streams, exit and resource ownership. The launcher keeps
closed-pipe status, worker shutdown and process exit; the session
worker captures output per command.
The cliOutput bundle entry is superseded and removed. The dispatcher
test now replaces only the command runtime, so output admission runs
production code. A new parity test compares the file session with a
fresh process.
* test(cli): bundle the one-shot entry in the runtime bundle fixture
* perf(tests): run plain CLI commands on the file's shared process
`cli.run` in `cliTest` files started a fresh compiled CLI for every
command, about 0.45s and 260 MB each before any work. The file-scoped
session already existed, but callers had to opt in through
`runFileCli` or `sharedCliRun`, so 1,300 call sites still spawned.
Make the fixture choose: `cli.run` uses the shared process when it
reports the command exactly as a fresh process would, and starts one
otherwise (stdin, explicit deadlines, MCP and MCP doctor routing,
NODE_OPTIONS, or enabled logging). `freshProcess: true` keeps
explicit process-level checks. The session worker now presents the
launcher's entrypoint, so registration identity matches a fresh
process.
`runFileCli` and `sharedCliRun` are superseded and removed; their
call sites use `cli.run`, and paired fresh/shared checks use
`freshProcess`.
* style(tests): format the managed member summary call site
* test(cli): give each shared-session command an empty stdin
The shared CLI process reads session frames from its own stdin. A
command that reads stdin without supplied input, such as
`compare-wasm-interfaces - --json`, read that pipe and hung, where a
fresh process receives EOF. The worker now presents an ended, empty
stdin to each command and restores its own afterwards.
The parity test compared the routed path with itself after cli.run
began choosing the session. It now compares a fresh process with the
session directly, including the `mcp add` refusal and a command
reading absent stdin.
* test(cli): keep default command logging and launcher checks on fresh processes
environment-serve and environment-build log at info when REA_LOG_LEVEL is
unset, through a logger that writes to stderr directly. The shared CLI
process captures only process.stderr writes, so routed runs lost those
lines. Declare the default-logging commands beside the command names,
have infoLogger read that set, and start a fresh process for them.
The log-level precedence checks compared the shared process with itself
after routing; their fresh side now passes freshProcess: true.
Explicit deadlines at or below the project deadline only shortened it:
a literal 30-second value also disabled the coverage scaling, which timed
out wide-capacity regressions on main. Workloads above the built
deadline use the long-running tag. Deadlines derived from an operation
budget remain.
Co-Authored-By: gensokyo-dev <342580529+gensokyo-dev@users.noreply.github.com>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Preserve the verbatim direct CLI selection in caller_input_path, separate from canonical subject identity and provider/query parameters. Fresh publication uses the existing immutable metadata import path so provider auto-recording cannot discard request provenance. Replay returns the current selection without rewriting stored Evidence or partitioning the cache by alias. Historical records without the optional field still authenticate.
Use the domain semantic projection for ledger agreement, remove the duplicate projection and subject-only replacement names, and preserve request metadata at same-invocation summary delivery. Later retained-view questions do not inherit that context. Existing one-shot parameters.input_path remains for compatibility.
Validation: 149 focused tests, 28 public CLI/MCP cases, all canonical advertised schemas through the pinned SDK, and nine documentation tests passed across the affected checks. Build, typecheck/lint, and formatting passed. Two Windows-only replay cases were skipped on macOS. Native macOS and managed fixtures were exercised; no Hopper/Ghidra/IDA runtime was started.
Preserve boundary facts and uncertainty through their consumers. Add focused production-boundary regressions and update affected documentation.
Fixes#6760
Summary delivery with --evidence_output wrote the bundle, then let the
command's close/cancellation check replace the result. A SIGINT/SIGTERM
during staging cleanup after commit returned typed cancellation without
the receipt, and a persistent staging cleanup failure after commit was
rewrapped as a provider cleanup error that dropped published_path.
Every --evidence_output command now selects its view first and publishes
through publishEvidenceDelivery, the owner inspect-managed-members already
used. Post-commit cancellation keeps {path, bytes} under
details.diagnostics.evidence_bundle; incomplete cleanup keeps
details.published_path and bytes; a cleanup retry that succeeds returns
the normal receipt; pre-commit cancellation creates nothing and names
the command's operation.
Fixes#6095
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Fixes#5148.
Add opt-in durable managed member summaries and authenticated paging while preserving complete default output, original Evidence, cleanup ownership and queued cancellation.
Verified with bounded real Newtonsoft/Redux/Rust tasks, independent oracles, 556 focused tests and the expanded domain gate; paired token estimates and latency tradeoffs are recorded in experiments/analysis-efficiency/managed-cli.md.
morluto