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* fix(reference): report entries beyond the path limit as I/O failures Reference-source traversal joins each child onto the root path. A valid tree whose nested entries exceed the platform's absolute path limit (PATH_MAX 1024 on macOS) makes lstat fail with ENAMETOOLONG. The reader's filesystem error allow-list lacked that code, so filesystemFailureDetail returned undefined and the native rejection escaped both readReferenceSource and importReferenceSource instead of becoming the existing failed `io` entry. Add ENAMETOOLONG to the allow-list, matching the JavaScript application reader's list. Readable siblings stay in the graph and the unreachable entry is recorded with its OS message. Fixes #2652 Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> * test(reference): assert the imported graph keeps readable and failed entries Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> * fix(process): report no remaining time after a provider deadline fires Node timers can fire while performance.now() is still a fraction of a millisecond short of the monotonic deadline. ProviderStartupDeadline then reported interruption "timeout" and an aborted signal while remainingMs() returned ceil(0.x) = 1, so polling loops guarded by remainingMs() > 0 (Hopper and Ghidra startup) could run past an elapsed deadline, and the real-timer test "aborts a bounded wait when its real monotonic deadline expires" failed intermittently in CI (expected 1 to be 0). Once the deadline's own timer has classified a timeout, report zero remaining time. A deterministic regression test fires the timer with the monotonic clock 0.4 ms short of the deadline. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> * fix(reference): preserve path limit entry uncertainty * fix(reference): preserve unknown entry failures and identity * fix(reference): type unknown-kind exclusions and keep them out of symlink counts The metadata-failure path offers "unknown" to exclusion predicates, but the predicate type only admitted concrete kinds, which broke the build. Directory-only secret and ignore rules now also match an unknown-kind entry (it may be a directory), and the summary counts unknown entries separately instead of as symlinks. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> Co-authored-by: morluto <76467478+morluto@users.noreply.github.com> Co-authored-by: Codex <codex@users.noreply.github.com>