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Use one command owner for setup, client writers, Gemini policy and CLI defaults. Migrate recognized runner registrations with backups and remove runner prewarm. Retain unknown identities and exercise real offline npm, CLI and MCP workflows. Fixes #7757 BREAKING CHANGE: managed MCP registrations use the selected absolute runtime and REA entry script, including package-runner cache paths. Keep that installation available or restore it before setup; unknown registrations require confirmed manual repair. Setup no longer returns prewarm or emits its progress events. Assisted-by: Reimu (gensokyo-skills:reimu-incident-triage) Assisted-by: Kogasa (gensokyo-skills:kogasa-surprise-testing) Assisted-by: Yukari (gensokyo-skills:yukari-boundary-analysis)