Merge pull request #10 from mozzy11/isante

update local setup
2026-10-27 18:05:59 +00:00 · 2023-07-13 16:36:16 +03:00 · 2023-07-13 16:35:31 +03:00 · 2023-05-16 16:48:53 +03:00 · 2023-05-16 16:48:05 +03:00 · 2023-01-17 10:05:04 +03:00
17 changed files with 341 additions and 669 deletions
@@ -1,34 +0,0 @@
-ISANTEPLUS_VERSION=v2.3.7
-ISANTEPLUS_DB_VERSION=v2.2.1
-
-# Global
-TZ=America/Los_Angeles
-RESTART=unless-stopped
-# COMPOSE_PROJECT_NAME="hie-botswana"
-ROOT_URL=uwdigi.org
-
-# Traefik
-VERSION=latest
-LOG=DEBUG
-
-# ACME DNS-01 challenge
-PROVIDER=route53
-RESOLVER=1.1.1.1:53,8.8.8.8:53
-EMAIL=pmanko@uw.edu
-
-# ISANTEPLUS 
-ADMIN_PASSWORD=Admin123
-
-#ISANTEPLUS_DB
-DB_SERVER_NAME=isanteplus-mysql
-DB_HOST_NAME=isanteplus-mysql
-DB_PORT=3306
-DB_ROOT_USER=root
-DB_ROOT_PASSWORD=debezium
-DB_USER=mysqluser
-DB_PASSWORD=mysqlpw
-DB_NAME=openmrs
-DB_BINLOG_SERVER_ID=223344
-DB_BINLOG_EXPIRE_DAYS=1
-
-#
@@ -0,0 +1,3 @@
+volume/.DS_Store
+volume/isanteplus/.DS_Store
+*/.DS_Store
@@ -43,6 +43,31 @@ Navigate to the `HaitiHealthBox` directory on your machine and run the following
 docker-compose up -d
 ```

-## Step Five: Register instance in Sedish
+## Local setup
+
+Spin up the services
+
+```
+docker-compose -f docker-compose.local.yml up -d
+```
+
+Acces the services at 
+
+| Instance  |     URL       | credentials (user : password)|
+|---------- |:-------------:|------:                       |
+| Isanteplus   |  https://localhost/openmrs/login.htm  | admin : Admin123 |
+| OpenHIM   |    https://localhost/  |  root@openhim.org : admin |
+| OpenELIS | https://localhost/OpenELIS-Global/ |    admin : adminADMIN!| 
+
+## Instructions 
+1. Add the necesary Lab Unit permisions to the User      
+Go To `Admin -> User Management -> Select User -> Under "Roles" ,Choose "ALL Lab Units" and select  "All Permissions"`
+
+2. Enable Importing electronic orders       
+Go To `Admin -> Order Entry Configuration -> Select "external orders" -> Click "Modify" -> select "True"`
+
+3. Add the Right Test Catalogue ie tests with `Loinc Codes`
+
+see [more](https://i-tech-uw.github.io/healthinformationexchange/lis-workflows/lis-workflows.html#tutorial-lab-order-communication-between-openmrs-and-openelis) for the EMR-LIS communication
+

-## Step Six: test SHR pipe
@@ -0,0 +1,227 @@
+version: "3.8"
+
+services:
+  ###
+  # reverse proxy
+  ###
+  nginx:
+    image: nginx:latest
+    container_name: nginx
+    restart: always
+    ports:
+      - 80:80
+      - 443:443
+    volumes:
+      - certs-vol:/etc/nginx/certs/
+      - keys-vol:/etc/nginx/keys/
+      - ./volume/nginix/nginx.conf:/etc/nginx/conf.d/default.conf
+    depends_on:
+      - certs 
+     
+
+  ##
+  #iSantePlus Server
+  ##
+  isanteplus:
+    container_name: isanteplus
+    hostname: isanteplus
+    image: ghcr.io/isanteplus/docker-isanteplus-server:v2.3.7
+    restart: unless-stopped
+    env_file:
+      - ./isanteplus.env
+    volumes:
+      - /openmrs/data
+      - ./volume/isanteplus/custom_modules:/custom_modules
+    # ports:
+    #   - 8081:8080  
+    logging:
+      driver: "json-file"
+      options:
+        max-size: "10m"
+
+ 
+
+  isanteplus-mysql:
+    image: ghcr.io/isanteplus/docker-isanteplus-db:v2.2.1
+    command: mysqld --character-set-server=utf8 --collation-server=utf8_general_ci --sql_mode=""
+    restart: unless-stopped
+    container_name: isanteplus-mysql
+    hostname: isanteplus-mysql
+    healthcheck:
+      test: "exit 0"
+    environment:
+      - MYSQL_DATABASE=openmrs
+      - MYSQL_ROOT_PASSWORD=debezium
+      - MYSQL_USER=mysqluser
+      - MYSQL_PASSWORD=mysqlpw
+      - MYSQL_ROOT_HOST=% # Allow docker containers to connect to mysql
+    volumes:
+     # - ./mysql.cnf:/etc/mysql/conf.d/custom.cnf # mysql config preconfigured to allow binlog/debezium
+      - /var/lib/mysql
+   
+  
+  # streaming-pipeline: 
+  #   image: ghcr.io/i-tech-uw/openmrs-fhir-analytics/streaming-binlog:latest
+  #   container_name: streaming-pipeline
+  #   healthcheck:
+  #     test: "exit 0"
+  #   volumes:
+  #     - ./configs/streaming-pipeline/config.json:/deployments/config.json
+  #     # data is the directory which you want to persist the generated parquet files
+  #     # - ./configs/streaming-pipeline/parquet:/tmp
+  #   environment:
+  #     - OPENMRS_URL=http://isanteplus:8080/openmrs
+  #     - OPENMRS_USERNAME=admin
+  #     - OPENMRS_PASSWORD=${IPLUS_ADMIN_PW-Admin123}
+  #     - SINK_URL=https://openhim-ssl.sedish-haiti.org/SHR/fhir
+  #     - SINK_USERNAME=${OPENHIM_STREAMING_CLIENT-streaming}
+  #     - SINK_PASSWORD=${OPENHIM_STREAMING_PW-streaming}
+  #     - JDBC_FETCH_SIZE=10000
+  #     - JDBC_MAX_POOL_SIZE=50
+  #     - JDBC_INITIAL_POOL_SIZE=10
+  #     - JDBC_DRIVER_CLASS=com.mysql.cj.jdbc.Driver
+  #     # the 2 variable below should be same as volume mappings above
+  #     - PARQUET_PATH=
+  #     - FHIR_DEBEZIUM_CONFIG_PATH=/deployments/config.json
+  ###
+  # OpenHIM
+  ###
+  openhim-core:
+    container_name: openhim-core
+    hostname: openhim-core
+    image: jembi/openhim-core:v7.1.0
+    restart: unless-stopped
+    environment:
+      mongo_url: "mongodb://mongo-db/openhim"
+      mongo_atnaUrl: "mongodb://mongo-db/openhim"
+      NODE_ENV: "development"
+  
+    ports:
+    #   - 5000
+    #   - 5001
+      - 8080:8080
+
+
+  openhim-console:
+    container_name: openhim-console
+    hostname: openhim-console
+    image: jembi/openhim-console:v1.15.0
+    restart: unless-stopped
+    volumes:
+      - ./volume/openhim/console.json:/usr/share/nginx/html/config/default.json
+    healthcheck:
+      test: "curl -sS http://openhim-console || exit 1"
+      interval: 10s
+      timeout: 60s
+      retries: 3
+    # ports: 
+    #   - 3000:80
+
+
+  # Loads Default OpenHIM Config
+  openhim-config:
+    container_name: openhim-config
+    image: ghcr.io/i-tech-uw/openhim-config:v0.0.0
+    volumes:
+      - ./volume/openhim/initial-config.json:/app/test-openhim-config.json
+
+  mongo-db:
+    container_name: mongo-db
+    image: mongo:3.4
+    volumes:
+      - /data/db
+    restart: unless-stopped
+ 
+  ####
+  # OpenELIS
+  ####
+  certs:
+    container_name: oe-certs
+    image: ghcr.io/i-tech-uw/certgen:main
+    restart: always
+    environment:
+      - KEYSTORE_PW="kspass"
+      - TRUSTSTORE_PW="tspass"
+    volumes:
+      - cert-volume:/etc/openelis-global
+      - keys-vol:/etc/ssl/private/
+      - certs-vol:/etc/ssl/certs/
+
+
+  database:
+    container_name: openelisglobal-database
+    image: postgres:9.5
+    # ports:
+    #   - "15432:5432"
+    restart: always
+    env_file:
+      - ./volume/database/database.env
+    volumes:
+      # preserves the database between containers
+      - db-data:/var/lib/postgresql/data
+        # files here will run on install
+      - ./volume/database/dbInit:/docker-entrypoint-initdb.d
+
+    healthcheck:
+      test: ["CMD", "pg_isready", "-q", "-d", "clinlims", "-U", "clinlims"]
+      timeout: 45s
+      interval: 10s
+      retries: 10
+
+  oe.openelis.org:
+    container_name: openelisglobal-webapp
+    image: ghcr.io/i-tech-uw/openelis-global-2:2.7.3.2
+    depends_on:
+      - database
+    # ports:
+    #   - "8095:8080"
+    #   - "8443:8443"
+    restart: always
+    environment:
+      - TZ=Africa/Nairobi
+        # context.xml doesn't seem to be able to pick up environment variables directly, so we are passing them in as CATALINA_OPTS
+      - CATALINA_OPTS= -Ddatasource.url=jdbc:postgresql://database:5432/clinlims -Ddatasource.username=clinlims -Ddatasource.password=clinlims
+    volumes:
+      - cert-volume:/etc/openelis-global
+      # -  openelis-plugins-data:/var/lib/openelis-global/plugins
+      - ./volume/tomcat/oe_server.xml:/usr/local/tomcat/conf/server.xml
+    secrets:
+      - source: datasource.password
+      - source: common.properties
+
+
+  fhir.openelis.org:
+    container_name: external-fhir-api
+    image: hapiproject/hapi:v5.5.1
+    # ports:
+    # - "8081:8080"
+    restart: always
+    environment:
+      - hapi.fhir.auto_create_placeholder_reference_targets=true
+      - hapi.fhir.allow_placeholder_references=true
+      - hapi.fhir.allow_external_references=true
+  
+
+  fhir.openelis.org.remote:
+    container_name: openelis-remote-source
+    image: hapiproject/hapi:v5.5.1
+    # ports:
+    #   - "8081:8080"
+    restart: always
+    environment:
+      - hapi.fhir.auto_create_placeholder_reference_targets=true
+      - hapi.fhir.allow_placeholder_references=true
+      - hapi.fhir.allow_external_references=true
+  
+
+secrets:
+  datasource.password:
+    file: ./volume/properties/datasource.password
+  common.properties:
+    file: ./volume/properties/common.properties
+
+volumes:
+  db-data:
+  cert-volume:
+  certs-vol:
+  keys-vol:
@@ -5,58 +5,16 @@ services:
  # reverse proxy
  ###
  traefik:
-    image: traefik:${VERSION}
+    image: traefik:v2.6.1
    container_name: traefik
-    restart: ${RESTART}
    ports:
      - "80:80"
      - "443:443"
    volumes:
-      - ./volume/networking/certs.yml:/etc/traefik/dynamic_conf/certs.yml
+      - ./certs/:/etc/certs/
      - /var/run/docker.sock:/var/run/docker.sock
-      - certs:/etc/certs
-    command: 
-      - --api.insecure=false
-      - --api.dashboard=true
-      - --providers.docker=true 
-      - --providers.docker.exposedbydefault=false
-      - --providers.file.watch=true
-      - --providers.file.directory=/etc/traefik/dynamic_conf
-      - --log.level=${LOG}
-      - --entrypoints.web.address=:80 
-      - --entrypoints.web-secure.address=:443
-      - --entrypoints.web.http.redirections.entrypoint.to=web-secure
-      - --entrypoints.web.http.redirections.entrypoint.scheme=https
-      - --serversTransport.insecureSkipVerify=true
-
-    labels:
-      - 'traefik.enable=true'
-      - 'traefik.docker.network=haitihealthbox_local_facility'
-      - "traefik.http.routers.api.rule=Host(`traefik.${ROOT_URL}`)"
-      - "traefik.http.routers.api.service=api@internal"
-      - 'traefik.http.routers.api.tls=true'
-      - 'traefik.http.routers.api.entrypoints=web-secure'
-    networks:
-      - local_facility
-    environment: 
-      - TZ
-  
-  ###
-  # Certs
-  ### 
-  certbot:
-    image:  ghcr.io/i-tech-uw/certbot-route53-cron:pr-2
-    container_name: certbot
-    environment:
-    - AWS_ACCESS_KEY_ID
-    - AWS_SECRET_ACCESS_KEY
-    - ROOT_URL=${ROOT_URL-localhost}
-    - EMAIL=${EMAIL-example@email.org}
-    volumes:
-    - certs:/etc/letsencrypt/
-    - letsencrypt:/var/lib/letsencrypt
-    networks:
-    - local_facility
+      - ./volume/traefik/conf.yaml:/conf/conf.yaml
+      - ./volume/traefik/traefik.yaml:/etc/traefik/traefik.yaml

  ###
  # iSantePlus Server
@@ -64,18 +22,10 @@ services:
  isanteplus:
    container_name: isanteplus
    hostname: isanteplus
-    image: ghcr.io/isanteplus/docker-isanteplus-server:${ISANTEPLUS_VERSION-latest}
+    image: ghcr.io/isanteplus/docker-isanteplus-server:v2.3.7
    restart: unless-stopped
-    environment:
-      - OMRS_CONFIG_CREATE_TABLES=false
-      - OMRS_CONFIG_ADD_DEMO_DATA=false
-      - OMRS_CONFIG_CONNECTION_URL=jdbc:mysql://${DB_HOST_NAME-isanteplus-mysql}:${DB_PORT-3306}/openmrs?autoReconnect=true
-      - OMRS_CONFIG_HAS_CURRENT_OPENMRS_DATABASE=true
-      - OMRS_JAVA_SERVER_OPTS="-Dfile.encoding=UTF-8 -server -Djava.security.egd=file:/dev/./urandom -Djava.awt.headless=true -Djava.awt.headlesslib=true"
-      - OMRS_CONFIG_CONNECTION_USERNAME=${DB_USER-mysqluser}
-      - OMRS_CONFIG_CONNECTION_PASSWORD=${DB_PASSWORD-mysqlpw}
-      - OMRS_CONFIG_CONNECTION_SERVER=isanteplus-mysql
-      - OMRS_DEV_DEBUG_PORT=1044    
+    env_file:
+      - ./isanteplus.env
    volumes:
      - /openmrs/data
      - ./custom_modules:/custom_modules
@@ -89,7 +39,7 @@ services:
      - local_facility

  isanteplus-mysql:
-    image: ghcr.io/isanteplus/docker-isanteplus-db:${ISANTEPLUS_DB_VERSION-latest}
+    image: ghcr.io/isanteplus/docker-isanteplus-db:v2.2.1
    command: mysqld --character-set-server=utf8 --collation-server=utf8_general_ci --sql_mode=""
    restart: unless-stopped
    container_name: isanteplus-mysql
@@ -97,13 +47,13 @@ services:
    healthcheck:
      test: "exit 0"
    environment:
-      - MYSQL_DATABASE=${DB_NAME-openmrs}
-      - MYSQL_ROOT_PASSWORD=${DB_ROOT_PASSWORD-debezium}
-      - MYSQL_USER=${DB_USER-mysqluser}
-      - MYSQL_PASSWORD=${DB_PASSWORD-mysqlpw}
+      - MYSQL_DATABASE=openmrs
+      - MYSQL_ROOT_PASSWORD=debezium
+      - MYSQL_USER=mysqluser
+      - MYSQL_PASSWORD=${IPLUS_DB_PW-mysqlpw}
      - MYSQL_ROOT_HOST=% # Allow docker containers to connect to mysql
    volumes:
-      - ./volume/database/isanteplus/mysql.cnf:/etc/mysql/conf.d/custom.cnf # mysql config preconfigured to allow binlog/debezium
+      - ./mysql.cnf:/etc/mysql/conf.d/custom.cnf # mysql config preconfigured to allow binlog/debezium
      - /var/lib/mysql
    networks:
      - local_facility
@@ -116,12 +66,12 @@ services:
    volumes:
      - ./configs/streaming-pipeline/config.json:/deployments/config.json
      # data is the directory which you want to persist the generated parquet files
-      - ./tmp:/tmp
+      # - ./configs/streaming-pipeline/parquet:/tmp
    environment:
      - OPENMRS_URL=http://isanteplus:8080/openmrs
      - OPENMRS_USERNAME=admin
      - OPENMRS_PASSWORD=${IPLUS_ADMIN_PW-Admin123}
-      - SINK_URL=https://openhim.sedish-haiti.org/SHR/fhir
+      - SINK_URL=https://openhim-ssl.sedish-haiti.org/SHR/fhir
      - SINK_USERNAME=${OPENHIM_STREAMING_CLIENT-streaming}
      - SINK_PASSWORD=${OPENHIM_STREAMING_PW-streaming}
      - JDBC_FETCH_SIZE=10000
@@ -129,7 +79,7 @@ services:
      - JDBC_INITIAL_POOL_SIZE=10
      - JDBC_DRIVER_CLASS=com.mysql.cj.jdbc.Driver
      # the 2 variable below should be same as volume mappings above
-      - PARQUET_PATH=/tmp
+      - PARQUET_PATH=
      - FHIR_DEBEZIUM_CONFIG_PATH=/deployments/config.json
  ###
  # OpenHIM
@@ -149,54 +99,20 @@ services:
      timeout: 20s
      retries: 2
    volumes:
-      - ./volume/openhim/healthcheck.js:/healthcheck.js
-      - ./volume/openhim/config.json:/app/config/default.json
-      - certs:/etc/certs
+      - ./configs/openhim/healthcheck.js:/healthcheck.js
+    ports:
+      - 5000
+      - 5001
+      - 8090:8080
    networks:
      - local_facility
-    ports:
-      - 8090:8080
-      - 5000:5000
-      - 5001:5001
-    labels:
-      - 'traefik.enable=true'
-      - 'traefik.docker.network=haitihealthbox_local_facility'
-      
-      - 'traefik.http.services.openhim-api.loadbalancer.server.port=8080'
-      - 'traefik.http.services.openhim-api.loadbalancer.server.scheme=https'
-      - 'traefik.http.routers.openhim-api.service=openhim-api'
-      - 'traefik.http.routers.openhim-api.tls=true'
-      - 'traefik.http.routers.openhim-api.entrypoints=web-secure'
-      - 'traefik.http.routers.openhim-api.rule=Host(`openhim-api.${ROOT_URL}`)'
-
-      - 'traefik.http.services.openhim-ssl.loadbalancer.server.port=5000'
-      - 'traefik.http.services.openhim-ssl.loadbalancer.server.scheme=https'
-      - 'traefik.http.routers.openhim-ssl.service=openhim-ssl'
-      - 'traefik.http.routers.openhim-ssl.tls=true'
-      - 'traefik.http.routers.openhim-ssl.entrypoints=web-secure'
-      - 'traefik.http.routers.openhim-ssl.rule=Host(`${ROOT_URL}`) && PathPrefix(`/openhim-ssl`)'
-      - 'traefik.http.routers.openhim-ssl.middlewares=openhim-ssl'      
-      - 'traefik.http.middlewares.openhim-ssl.stripprefix.prefixes=/openhim-ssl'
-      - 'traefik.http.middlewares.openhim-ssl.stripprefix.forceSlash=false'
-
-      - 'traefik.http.services.openhim-http.loadbalancer.server.port=5001'
-      - 'traefik.http.services.openhim-http.loadbalancer.server.scheme=http'
-      - 'traefik.http.routers.openhim-http.service=openhim-http'
-      - 'traefik.http.routers.openhim-http.tls=false'
-      - 'traefik.http.routers.openhim-http.entrypoints=web'
-      - 'traefik.http.routers.openhim-http.rule=Host(`${ROOT_URL}`) && PathPrefix(`/openhim-http`)'
-      - 'traefik.http.routers.openhim-http.middlewares=openhim-http'      
-      - 'traefik.http.middlewares.openhim-http.stripprefix.prefixes=/openhim-http'
-      - 'traefik.http.middlewares.openhim-http.stripprefix.forceSlash=false'
-
-
  openhim-console:
    container_name: openhim-console
    hostname: openhim-console
    image: jembi/openhim-console:latest
    restart: unless-stopped
    volumes:
-       - ./volume/openhim/console.json:/usr/share/nginx/html/config/default.json
+      - ./volume/openhim/console.json:/usr/share/nginx/html/config/default.json
    healthcheck:
      test: "curl -sS http://openhim-console || exit 1"
      interval: 10s
@@ -206,12 +122,6 @@ services:
      - 3000:80
    networks:
      - local_facility
-    labels:
-      - 'traefik.enable=true'
-      - 'traefik.docker.network=haitihealthbox_local_facility'
-      - 'traefik.http.routers.openhim-console.tls=true'
-      - 'traefik.http.routers.openhim-console.entrypoints=web-secure'
-      - 'traefik.http.routers.openhim-console.rule=Host(`${ROOT_URL}`)'
  # Loads Default OpenHIM Config
  openhim-config:
    container_name: openhim-config
@@ -265,11 +175,11 @@ services:

  oe.openelis.org:
    container_name: openelisglobal-webapp
-    image: ghcr.io/i-tech-uw/openelis-global-2@sha256:abc0916a3c61176571eb2e771cfeb399d0f29c9e02857879d0e12471d3ebf8f3
+    image: ghcr.io/i-tech-uw/openelis-global-2:develop
    depends_on:
      - database
    ports:
-      #- "8095:8080"
+      - "8095:8080"
      - "8443:8443"
    restart: always
    environment:
@@ -321,8 +231,6 @@ secrets:
 volumes:
  db-data:
  cert-volume:
-  certs:
-  letsencrypt:

 networks:
  local_facility:
@@ -0,0 +1,11 @@
+OMRS_JAVA_MEMORY_OPTS="-Xmx8192m -Xms4096m -XX:NewSize=512m"
+OMRS_CONFIG_CONNECTION_SERVER=isanteplus-mysql
+OMRS_CONFIG_CREATE_DATABASE_USER=false
+OMRS_CONFIG_CREATE_TABLES=false
+OMRS_CONFIG_ADD_DEMO_DATA=false
+OMRS_CONFIG_CONNECTION_URL=jdbc:mysql://isanteplus-mysql:3306/openmrs?autoReconnect=true
+OMRS_CONFIG_HAS_CURRENT_OPENMRS_DATABASE=true
+OMRS_JAVA_SERVER_OPTS="-Dfile.encoding=UTF-8 -server -Djava.security.egd=file:/dev/./urandom -Djava.awt.headless=true -Djava.awt.headlesslib=true"
+OMRS_CONFIG_CONNECTION_USERNAME=mysqluser
+OMRS_CONFIG_CONNECTION_PASSWORD=mysqlpw
+OMRS_DEV_DEBUG_PORT=1044
@@ -1,246 +0,0 @@
-{
-  "debeziumConfigurations": {
-    "databaseServerName" : "$DB_SERVER_NAME",
-    "databaseHostName" : "$DB_HOST_NAME",
-    "databaseServerId" : "$DB_SERVER_ID",
-    "databasePort" : "$DB_PORT",
-    "databaseUser" : "$DB_USER",
-    "databasePassword" : "$DB_PASSWORD",
-    "databaseName" : "$DB_NAME",
-    "databaseOffsetStorage" : "data/offset.dat",
-    "databaseHistory" : "data/dbhistory.dat",
-    "snapshotMode" : "schema_only"
-   },
-  "eventConfigurations": {
-    "location": {
-      "enabled": "false",
-      "title": "Location",
-      "parentTable": "location",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/location/{uuid}?v=full",
-        "fhir": "/Location/{uuid}"
-      }
-    },
-    "concept": {
-      "enabled": "false",
-      "title": "Concept",
-      "parentTable": "concept",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/concept/{uuid}?v=full"
-      }
-    },
-    "cohort": {
-      "enabled": "true",
-      "title": "Cohort",
-      "parentTable": "cohort",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/cohort/{uuid}?v=full",
-        "fhir": "/Group/{uuid}"
-      }
-    },
-    "visittype": {
-      "enabled": "false",
-      "title": "Visit Type",
-      "parentTable": "visittype",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/visittype/{uuid}?v=full"
-      }
-    },
-    "person_address": {
-      "enabled": "false",
-      "title": "PersonAddress",
-      "parentTable": "person_address",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/person/{parent-uuid}/address/{uuid}?v=full"
-      }
-    },
-    "person_name": {
-      "enabled": "false",
-      "title": "PersonName",
-      "parentTable": "person_name",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/person/{parent-uuid}/name/{uuid}?v=full"
-      }
-    },
-    "patient_identifier": {
-      "enabled": "false",
-      "title": "PatientIdentifier",
-      "parentTable": "patient_identifier",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/patient/{parent-uuid}/identifier/{uuid}?v=full"
-      }
-    },
-    "person_attribute": {
-      "enabled": "false",
-      "title": "PersonAttribute",
-      "parentTable": "person_attribute",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/person/{parent-uuid}/attribute/{uuid}?v=full"
-      }
-    },
-    "person": {
-      "enabled": "true",
-      "title": "Person",
-      "parentTable": "person",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/person/{uuid}?v=full",
-        "fhir": "/Person/{uuid}"
-      }
-    },
-    "provider": {
-      "enabled": "true",
-      "title": "Provider",
-      "parentTable": "provider",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/provider/{uuid}?v=full",
-        "fhir": "/Provider/{uuid}"
-      }
-    },
-    "user": {
-      "enabled": "false",
-      "title": "User",
-      "parentTable": "user",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/user/{uuid}?v=full"
-      }
-    },
-    "patient": {
-      "enabled": "true",
-      "title": "Patient",
-      "parentTable": "person",
-      "parentForeignKey": "person_id",
-      "childPrimaryKey":"patient_id",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/patient/{uuid}?v=full",
-        "fhir": "/Patient/{uuid}"
-      }
-    },
-    "relationship": {
-      "enabled": "true",
-      "title": "Relationship",
-      "parentTable": "relationship",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/relationship/{uuid}?v=full",
-        "fhir": "/Relationship/{uuid}"
-      }
-    },
-    "drug": {
-      "enabled": "true",
-      "title": "Drug",
-      "parentTable": "drug",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/drug/{uuid}?v=full",
-        "fhir": "/Drug/{uuid}"
-      }
-    },
-    "allergy": {
-      "enabled": "true",
-      "title": "Allergy",
-      "parentTable": "allergy",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/allergy/{uuid}?v=full",
-        "fhir": "/AllergyIntolerance/{uuid}"
-      }
-    },
-    "form":{
-      "enabled": "true",
-      "title": "Form",
-      "parentTable": "form",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/form/{uuid}?v=full"
-      }
-    },
-    "order": {
-      "enabled": "true",
-      "title": "Order",
-      "parentTable": "order",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/order/{uuid}?v=full",
-        "fhir": "/Order/{uuid}"
-      }
-    },
-    "drug_order":{
-      "enabled": "true",
-      "title": "DrugOrder",
-      "parentTable": "drug_order",
-      "parentForeignKey": "order_id",
-      "childPrimaryKey":"order_id",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/drug_order/{uuid}?v=full",
-        "fhir": "/MedicationRequest/{uuid}"
-      }
-    },
-    "test_order": {
-      "enabled": "true",
-      "title": "TestOrder",
-      "parentTable": "test_order",
-      "parentForeignKey": "order_id",
-      "childPrimaryKey":"order_id",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/test_order/{uuid}?v=full",
-        "fhir": "/ProcedureRequest/{uuid}"
-      }
-    },
-    "obs": {
-      "enabled": "true",
-      "title": "Observation",
-      "parentTable": "obs",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/obs/{uuid}?v=full",
-        "fhir": "/Observation/{uuid}"
-      }
-    },
-    "encounter":{
-      "enabled": "true",
-      "title": "Encounter",
-      "parentTable": "encounter",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/encounter/{uuid}?v=full",
-        "fhir": "/Encounter/{uuid}"
-      }
-    },
-    "visit":{
-      "enabled": "false",
-      "title": "Visit",
-      "parentTable": "visit",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/visit/{uuid}?v=full",
-        "fhir": "/Encounter/{uuid}"
-      }
-    },
-    "program":{
-      "enabled": "true",
-      "title": "Program",
-      "parentTable": "program",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/program/{uuid}?v=full",
-        "fhir": "/Program/{uuid}"
-      }
-    },
-    "programenrollment":{
-      "enabled": "true",
-      "title": "Program Enrollment",
-      "parentTable": "programenrollment",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/programenrollment/{uuid}?v=full",
-        "fhir": "/Programenrollment/{uuid}"
-      }
-    },
-    "privilege":{
-      "enabled": "true",
-      "title": "Privilege",
-      "parentTable": "privilege",
-      "linkTemplates": {
-        "rest": "/ws/rest/v1/privilege/{uuid}?v=full"
-      }
-    },
-    "audit_message":{
-      "enabled": "true",
-      "title": "AuditMessage",
-      "parentTable": "audit_message",
-      "linkTemplates": {
-        "rest": "/ws/rest/sync2/messages/{uuid}"
-      }
-    }
-  }
-}
@@ -1,62 +0,0 @@
-# Copyright 2020 Google LLC
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#      http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-
-# This is a pre-configuration for Docker MySQL to allow BinLog and replication necessary configurations for Debezium to work
-# see ./openmrs-compose.yaml
-# REF: https://github.com/debezium/debezium/blob/master/debezium-connector-mysql/src/test/docker/server-gtids/my.cnf
-
-# For advice on how to change settings please see
-# http://dev.mysql.com/doc/refman/5.7/en/server-configuration-defaults.html
-
-[mysqld]
-#
-# Remove leading # and set to the amount of RAM for the most important data
-# cache in MySQL. Start at 70% of total RAM for dedicated server, else 10%.
-# innodb_buffer_pool_size = 128M
-#
-# Remove leading # to turn on a very important data integrity option: logging
-# changes to the binary log between backups.
-# log_bin
-#
-# Remove leading # to set options mainly useful for reporting servers.
-# The server defaults are faster for transactions and fast SELECTs.
-# Adjust sizes as needed, experiment to find the optimal values.
-# join_buffer_size = 128M
-# sort_buffer_size = 2M
-# read_rnd_buffer_size = 2M
-skip-host-cache
-skip-name-resolve
-#datadir=/var/lib/mysql
-#socket=/var/lib/mysql/mysql.sock
-#secure-file-priv=/var/lib/mysql-files
-user=mysql
-
-# Disabling symbolic-links is recommended to prevent assorted security risks
-symbolic-links=0
-
-#log-error=/var/log/mysqld.log
-#pid-file=/var/run/mysqld/mysqld.pid
-
-# ----------------------------------------------
-# Enable the binlog for replication & CDC
-# ----------------------------------------------
-
-# Enable binary replication log and set the prefix, expiration, and log format.
-# The prefix is arbitrary, expiration can be short for integration tests but would
-# be longer on a production system. Row-level info is required for ingest to work.
-# Server ID is required, but this will vary on production systems
-server-id         = $DB_BINLOG_SERVER_ID
-log_bin           = mysql-bin
-expire_logs_days  = $DB_BINLOG_EXPIRE_DAYS
-binlog_format     = row
@@ -1,11 +0,0 @@
-tls:
-  certificates:
-    - certFile: /etc/certs/live/default/fullchain.pem
-      keyFile: /etc/certs/live/default/privkey.pem
-      stores:
-        - default
-  stores:
-    default:
-      defaultCertificate:
-        certFile: /etc/certs/live/default/fullchain.pem
-        keyFile: /etc/certs/live/default/privkey.pem
@@ -0,0 +1,32 @@
+server {
+    listen 80;
+    server_name localhost;
+    return 301 https://localhost$request_uri;
+}
+
+server {
+
+  listen 443 ssl;
+  server_name localhost;
+    
+  ssl_certificate /etc/nginx/certs/apache-selfsigned.crt;
+  ssl_certificate_key /etc/nginx/keys/apache-selfsigned.key;
+  
+  proxy_set_header X-Forwarded-For $proxy_protocol_addr; # To forward the original client's IP address 
+  proxy_set_header X-Forwarded-Proto $scheme; # to forward the  original protocol (HTTP or HTTPS)
+  proxy_set_header Host $host; # to forward the original host requested by the client
+      
+  absolute_redirect off;
+     
+  location /openmrs {
+      proxy_pass http://isanteplus:8080;
+  }
+
+  location /OpenELIS-Global {
+      proxy_pass https://oe.openelis.org:8443;
+  }
+
+  location / {
+      proxy_pass http://openhim-console;
+  }
+}
@@ -1,155 +0,0 @@
-{
-  "bindAddress": "0.0.0.0",
-  "mongo": {
-    "url": "mongodb://localhost/openhim",
-    "atnaUrl": "mongodb://localhost/openhim",
-    "connectionOptions": {},
-    "openHIMApiReadPreference": "primaryPreferred",
-    "openHIMApiWriteConcern": 1,
-    "openHIMApiReadConcern": "local"
-  },
-  "logger": {
-    "level": "info",
-    "logToDB": true,
-    "capDBLogs": true,
-    "capSize": 10000000
-  },
-  "mongoLogger": {
-    "options": {
-      "w": 0,
-      "useNewUrlParser": true
-    }
-  },
-  "router": {
-    "externalHostname": "uwdigi.org",
-    "httpPort": 5001,
-    "httpsPort": 5000,
-    "timeout": 60000
-  },
-  "bodyCull":{
-    "enabled":true,
-    "pollPeriodMins": 60
-  },
-  "api": {
-    "enabled": true,
-    "protocol": "https",
-    "port": 8080,
-    "authWindowSeconds": 10,
-    "maxBodiesSizeMB": 15,
-    "maxPayloadSizeMB": 50,
-    "truncateSize": 15000,
-    "truncateAppend": "\n[truncated ...]",
-    "authenticationTypes": ["basic", "token"]
-  },
-  "rerun": {
-    "httpPort": 7786,
-    "host": "localhost",
-    "processor": {
-      "enabled": false,
-      "pollPeriodMillis": 2000
-    },
-    "taskTransactionsLength": 50,
-    "activeConcurrentTasks": 3
-  },
-  "tcpAdapter": {
-    "httpReceiver": {
-      "httpPort": 7787,
-      "host": "localhost"
-    }
-  },
-  "polling": {
-    "enabled": false,
-    "pollingPort": 7788,
-    "host": "localhost"
-  },
-  "authentication": {
-    "enableMutualTLSAuthentication": true,
-    "enableBasicAuthentication": true,
-    "enableCustomTokenAuthentication": true,
-    "enableJWTAuthentication": false,
-    "jwt": {
-      "secretOrPublicKey": "",
-      "algorithms": "",
-      "audience": "",
-      "issuer": ""
-    }
-  },
-  "email": {
-    "fromAddress": "address@example.com",
-    "nodemailer": {
-      "service": "Gmail",
-      "auth": {
-        "user": "user@gmail.com",
-        "pass": "password"
-      }
-    }
-  },
-  "smsGateway": {
-    "provider": "clickatell",
-    "config": {
-      "user": "user",
-      "pass": "pass",
-      "apiID": "apiID"
-    }
-  },
-  "alerts": {
-    "enableAlerts": true,
-    "pollPeriodMinutes": 1,
-    "himInstance": "Haiti Health Box OpenHIM",
-    "consoleURL": "http://localhost:9000"
-  },
-  "reports": {
-    "enableReports": false,
-    "dailyReportAt": "0 7 * * *",
-    "weeklyReportAt": "0 7 * * 1",
-    "utcOffset": null
-  },
-  "events": {
-    "enableTSNormalization": true
-  },
-  "newUserExpiry": {
-    "duration": 7,
-    "durationType": "days"
-  },
-  "userPasswordResetExpiry": {
-    "duration": 1,
-    "durationType": "hours"
-  },
-  "auditing": {
-    "servers": {
-      "udp": {
-        "enabled": false,
-        "port": 5050
-      },
-      "tls": {
-        "enabled": false,
-        "port": 5051
-      },
-      "tcp": {
-        "enabled": false,
-        "port": 5052
-      }
-    },
-    "auditEvents": {
-      "interface": "internal",
-      "host": "localhost",
-      "port": 5051,
-      "auditSourceID": "OpenHIM"
-    }
-  },
-  "caching": {
-    "enabled": true,
-    "refreshMillis": 1000
-  },
-  "tlsClientLookup": {
-    "type": "in-chain"
-  },
-  "agenda": {
-    "startupDelay": 500
-  },
-  "certificateManagement": {
-    "watchFSForCert": true,
-    "certPath": "/etc/certs/live/default/fullchain.pem",
-    "keyPath": "/etc/certs/live/default/privkey.pem"
-  }
-}
@@ -1,14 +1,13 @@
 {
-  "version": "1.14.4",
-  "minimumCoreVersion": "5.0.0",
-  "protocol": "https",
-  "host": "52.11.216.56",
-  "hostPath": "",
-  "port": 8090,
-  "title": "Haiti Health Box Console",
-  "footerTitle": "Haiti Health Box Console",
-  "footerPoweredBy": "<a href='http://openhim.org/' target='_blank'>Powered by OpenHIM</a>",
-  "loginBanner": "",
-  "mediatorLastHeartbeatWarningSeconds": 60,
-  "mediatorLastHeartbeatDangerSeconds": 120
-}
+    "version": "1.10.0",
+    "minimumCoreVersion": "3.4.0",
+    "protocol": "https",
+    "host": "localhost",
+    "port": 8080,
+    "title": "Admin Console",
+    "footerTitle": "OpenHIM Administration Console",
+    "footerPoweredBy": "<a href='http://openhim.org/' target='_blank'>Powered by OpenHIM</a>",
+    "loginBanner": "",
+    "mediatorLastHeartbeatWarningSeconds": 60,
+    "mediatorLastHeartbeatDangerSeconds": 120
+  }
@@ -1,25 +0,0 @@
-var http = require("https");
-
-var options = {  
-    host : "0.0.0.0",
-    port : "8080",
-    timeout : 1000,
-    rejectUnauthorized: false
-};
-
-var request = http.request(options, (res) => {  
-    console.log(`STATUS: ${res.statusCode}`);
-    if (res.statusCode == 200 || res.statusCode == 401) {
-        process.exit(0);
-    }
-    else {
-        process.exit(1);
-    }
-});
-
-request.on('error', function(err) {  
-    console.log('ERROR');
-    process.exit(1);
-});
-
-request.end();  
@@ -51,8 +51,8 @@
          "forwardAuthHeader": false,
          "name": "Central FHIR server",
          "secured": false,
-          "host": "52.11.216.56",
-          "port": 8081,
+          "host": "fhir.openelis.org.remote",
+          "port": 8080,
          "path": "",
          "pathTransform": "",
          "primary": true,
@@ -15,12 +15,12 @@ spring.jpa.hibernate.ddl-auto=update

 org.openelisglobal.fhirstore.uri=http://fhir.openelis.org:8080/fhir/

-org.openelisglobal.remote.source.uri=http://52.11.216.56:5001/fhir/
+org.openelisglobal.remote.source.uri=http://openhim-core:5001/fhir/
 org.openelisglobal.remote.source.updateStatus=true
 org.openelisglobal.remote.source.identifier=Practitioner/f9badd80-ab76-11e2-9e96-0800200c9a66
 org.openelisglobal.task.useBasedOn=true

-org.openelisglobal.fhir.subscriber=http://52.11.216.56:5001/fhir/
+org.openelisglobal.fhir.subscriber=http://openhim-core:5001/fhir/
 org.openelisglobal.fhir.subscriber.resources=Task,Patient,ServiceRequest,DiagnosticReport,Observation,Specimen,Practitioner,Encounter

 #org.openelisglobal.facilitylist.fhirstore = http://localhost:4000/fhir/DEFAULT
@@ -31,5 +31,5 @@ org.openelisglobal.fhir.subscriber.resources=Task,Patient,ServiceRequest,Diagnos
 facilitylist.schedule.fixedRate=864000000

 #provider List
-org.openelisglobal.providerlist.fhirstore=http://52.11.216.56:5001/fhir/
+org.openelisglobal.providerlist.fhirstore=http://openhim-core:5001/fhir/
 org.openelisglobal.requester.identifier=Practitioner/f9badd80-ab76-11e2-9e96-0800200c9a66
Author	SHA1	Message	Date
Mutesasira Moses	89dc4fb317	Merge pull request #10 from mozzy11/isante update local setup	2023-07-13 16:36:16 +03:00
Mutesasira Moses	4651bd4b8e	update local setup	2023-07-13 16:35:31 +03:00
Mutesasira Moses	e8718a3ab7	Update README.md	2023-05-16 16:48:53 +03:00
Mutesasira Moses	357e6165cf	Update README.md	2023-05-16 16:48:05 +03:00
Mutesasira Moses	cee4905028	Merge pull request #5 from mozzy11/isante redirect http to https	2023-01-17 10:05:04 +03:00
mozzy11	0b6b85e018	redirect http to https	2023-01-17 10:04:06 +03:00
Mutesasira Moses	0f4f38fd20	Update README.md	2022-12-09 12:38:22 +03:00
Mutesasira Moses	8ea047424c	Update README.md	2022-12-09 12:34:42 +03:00
Mutesasira Moses	ce2f3d48cf	Update README.md	2022-12-09 12:32:09 +03:00
Mutesasira Moses	184469d358	Update README.md	2022-12-09 12:31:07 +03:00
Mutesasira Moses	4cfc6b073f	Update README.md	2022-12-09 12:30:20 +03:00
Mutesasira Moses	9044c3eff7	Update README.md	2022-12-09 12:29:49 +03:00
Mutesasira Moses	05f57fc5c8	Update README.md	2022-12-08 11:56:12 +03:00
Mutesasira Moses	0455783e0f	Merge pull request #4 from mozzy11/isante Isante	2022-12-08 11:33:38 +03:00
mozzy11	bb0ab54d4c	add config fro local setup	2022-12-08 11:32:21 +03:00
Mutesasira Moses	0e4f358cde	add local setup	2022-12-07 21:24:59 +03:00
Mutesasira Moses	b2862c4c8c	update local conf	2022-12-07 17:16:26 +03:00