Bootup fixes

redirect http to https

.env.local

@@ -0,0 +1,26 @@
+# General
+
+CLUSTERED_MODE=false
+
+# Log
+
+DEBUG=0
+BASHLOG_FILE=0
+BASHLOG_FILE_PATH=platform.log
+
+# Data Mapper - Logstash
+
+LOGSTASH_DEV_MOUNT=false
+LOGSTASH_PACKAGE_PATH=
+
+# Dashboard Visualiser - JS Report
+
+## !NOTE: MAKE SURE YOU HAVE RUN 'set-permissions.sh' SCRIPT BEFORE AND AFTER RUNNING JS REPORT
+JS_REPORT_DEV_MOUNT=false
+JS_REPORT_PACKAGE_PATH=
+
+# Message Bus - Kafka
+
+#  !NOTE: Topics should comma seperated, optional include partion and repliction values
+#   e.g. <topic>:<partions>:<replicationFactor> -> test:3:2 (defaults to <topics>:3:1)
+# KAFKA_TOPICS=2xx,reprocess,3xx,metrics:3:1

.gitignore

@@ -0,0 +1,4 @@
+instant
+instant-linux
+instant-macosx
+instant.exe

Dockerfile

@@ -0,0 +1,12 @@
+FROM openhie/package-base:2.1.3
+
+# Install yq
+RUN curl -L https://github.com/mikefarah/yq/releases/download/v4.23.1/yq_linux_amd64 -o /usr/bin/yq
+RUN chmod +x /usr/bin/yq
+
+# Install jq
+RUN apt-get install jq -y 1>/dev/null
+# Install envsubst
+RUN apt-get install gettext-base -y 1>/dev/null
+
+ADD . .

README.md

@@ -1,31 +1,73 @@
-## OMRS-LIS Local setup
+# HaitiHealthBox
+An all-inclusive health information system setup for health facilities in Haiti
+
+# Setup Instructions
+
+## Step One: Install Docker
+See https://docs.docker.com/engine/install/
+
+Test to make sure both of these commands work:
+```sh
+docker -v
+docker compose version
+```
+
+**Note: If your docker version does not support the `docker compose` syntax, 
+install `docker-compose` using the instructions here: https://docs.docker.com/compose/install/**
+
+
+## Step Two: Get HaitiHealthBox from GitHub
+
+Run the following command:
+```sh
+git clone https://github.com/I-TECH-UW/HaitiHealthBox.git
+```
+
+If you want to use a specific version from the [version list](https://github.com/I-TECH-UW/HaitiHealthBox/releases), you can check out the corresponding tag. For example, to use version `0.0.0-alpha`, run:
+```sh
+git checkout v0.0.0-alpha
+```
+
+Otherwise, you can use the latest `main` branch that is the default. 
+
+## Step Three: Set some configurations
+Set some temporary variables to store your desired iSantePlus Database and iSantePlus admin passwords:
+
+```sh
+export IPLUS_ADMIN_PW=<your-password>
+export IPLUS_DB_PW=<your-password>
+```
+## Step Four: Boot up Docker Enviornment
+Navigate to the `HaitiHealthBox` directory on your machine and run the following command:
+```sh
+docker-compose up -d
+```
+
+## Local setup
 
 Spin up the services
 
 ```
-docker-compose  up -d
+docker-compose -f docker-compose.local.yml up -d
 ```
 
 Acces the services at 
 
 | Instance  |     URL       | credentials (user : password)|
 |---------- |:-------------:|------:                       |
-| Openmrs 3x   |  http://localhost/openmrs/spa  | admin : Admin123 |
-| Openmrs 2.x   |  http://localhost/openmrs/  | admin : Admin123 |
-| OpenHIM   |    http://localhost:3000/  |  root@openhim.org : admin |
-| OpenELIS | https://localhost:8443/OpenELIS-Global/ |    admin : adminADMIN!| 
+| Isanteplus   |  https://localhost/openmrs/login.htm  | admin : Admin123 |
+| OpenHIM   |    https://localhost/  |  root@openhim.org : admin |
+| OpenELIS | https://localhost/OpenELIS-Global/ |    admin : adminADMIN!| 
 
 ## Instructions 
-see [Instructions](https://wiki.openmrs.org/display/projects/Order+Entry+UI+Administrator+Guide#OrderEntryUIAdministratorGuide-SettingsandConfiguration) to configure the Lab Order Entry Owa
-
-### Configure the LIS
 1. Add the necesary Lab Unit permisions to the User      
 Go To `Admin -> User Management -> Select User -> Under "Roles" ,Choose "ALL Lab Units" and select  "All Permissions"`
 
 2. Enable Importing electronic orders       
 Go To `Admin -> Order Entry Configuration -> Select "external orders" -> Click "Modify" -> select "True"`
 
-3. Add the Right Test Catalogue ie tests with `Loinc Codes` that map to the Test Concepts in OpenMRS
+3. Add the Right Test Catalogue ie tests with `Loinc Codes`
 
 see [more](https://i-tech-uw.github.io/healthinformationexchange/lis-workflows/lis-workflows.html#tutorial-lab-order-communication-between-openmrs-and-openelis) for the EMR-LIS communication
 
+

build-image.sh

@@ -0,0 +1,3 @@
+#!/bin/bash
+TAG_NAME=${1:-latest}
+docker build --platform linux/x86_64 -t itechuw/haiti-health-box:"$TAG_NAME" .

config.yaml

@@ -0,0 +1,12 @@
+projectName: Haiti Health Box
+image: itechuw/haiti-health-box
+logPath: /tmp/logs
+
+packages:
+    - identity-access-manager-keycloak
+    - interoperability-layer-openhim
+    - lis-openelis-global
+    - monitoring
+    - emr-isanteplus
+    - openhim-mediator-data-stream
+    - reverse-proxy-caddy

docker-compose.yml

@@ -1,208 +0,0 @@
-version: "3.8"
-
-services:
-
-  openmrs-mysql:
-    restart: "always"
-    image: mysql:5.6
-   # platform: linux/x86_64
-    container_name: emr-mysql
-    command: "mysqld --character-set-server=utf8 --collation-server=utf8_general_ci"
-    ports:
-      - "3306:3306"
-    environment:
-      - MYSQL_DATABASE=openmrs
-      - MYSQL_ROOT_PASSWORD=Admin123
-      - MYSQL_USER=openmrs
-      - MYSQL_PASSWORD=Admin123
-      - MYSQL_ROOT_HOST=%  
-    healthcheck:
-      test: "exit 0"
-    volumes:
-      - openmrs-referenceapplication-mysql-data:/var/lib/mysql
-      #- ./data:/var/lib/mysql
-      - ./volumes/openmrs/dbdump:/docker-entrypoint-initdb.d 
-
-  openmrs-server:
-    restart: "always"
-    image: openmrs/openmrs-reference-application-distro:2.11.0
-    container_name: emr-server
-    depends_on:
-      - openmrs-mysql
-    # ports:
-    #   - "8090:8080"
-    environment:
-      DB_DATABASE: ${MYSQL_DB:-openmrs}
-      DB_HOST: openmrs-mysql
-      DB_USERNAME: ${MYSQL_USER:-openmrs}
-      DB_PASSWORD: ${MYSQL_PASSWORD:-Admin123}
-      DB_CREATE_TABLES: 'false'
-      DB_AUTO_UPDATE: 'false'
-      MODULE_WEB_ADMIN: 'true'
-    healthcheck:
-      test: ["CMD", "curl", "-f", "http://localhost:8080/openmrs/"]
-      timeout: 20s
-    volumes:
-      # - openmrs-referenceapplication-data:/usr/local/tomcat/.OpenMRS/
-      - ./volumes/openmrs/modules:/usr/local/tomcat/.OpenMRS/modules/ # do not store modules in data
-      - ./volumes/openmrs/owa:/usr/local/tomcat/.OpenMRS/owa/ # do not store owa in data
-
-  gateway:
-    image: openmrs/openmrs-reference-application-3-gateway:nightly
-    depends_on:
-      - openmrs3x-frontend
-      - openmrs-server
-    volumes:
-       - ./volumes/nginix/nginx.conf:/etc/nginx/nginx.conf
-    ports:
-      - "80:80"
-
-  openmrs3x-frontend:
-    image: openmrs/openmrs-reference-application-3-frontend:3.0.0-alpha.10
-    environment:
-      SPA_PATH: /openmrs/spa
-      API_URL: /openmrs
-      SPA_CONFIG_URLS: /openmrs/spa/config.json
-    healthcheck:
-      test: ["CMD", "curl", "-f", "http://localhost/"]
-    
-  
-  ###
-  # OpenHIM
-  ###
-  openhim-core:
-    container_name: openhim-core
-    hostname: openhim-core
-    image: jembi/openhim-core:v7.1.0
-    restart: unless-stopped
-    environment:
-      mongo_url: "mongodb://mongo-db/openhim"
-      mongo_atnaUrl: "mongodb://mongo-db/openhim"
-      NODE_ENV: "development"
-    ports:
-      - "8085:8080"
-      # - "5000:5000"
-      - "5001:5001"
-    depends_on:
-      - mongo-db
-
-  openhim-console:
-    container_name: openhim-console
-    hostname: openhim-console
-    image: jembi/openhim-console:v1.15.0
-    restart: unless-stopped
-    volumes:
-      - ./volumes/openhim/console.json:/usr/share/nginx/html/config/default.json
-    healthcheck:
-      test: "curl -sS http://openhim-console || exit 1"
-      interval: 10s
-      timeout: 60s
-      retries: 3
-    ports: 
-      - 3000:80
-
-  # Loads Default OpenHIM Config
-  openhim-config:
-    container_name: openhim-config
-    image: ghcr.io/i-tech-uw/openhim-config:v0.0.0
-    volumes:
-      - ./volumes/openhim/initial-config.json:/app/test-openhim-config.json
-
-  mongo-db:
-    container_name: mongo-db
-    image: mongo:3.4
-    volumes:
-      - /data/db
-    restart: unless-stopped
-
-  ####
-  # OpenELIS
-  ####
-  certs:
-    container_name: oe-certs
-    image: ghcr.io/i-tech-uw/certgen:main
-    restart: always
-    environment:
-      - KEYSTORE_PW="kspass"
-      - TRUSTSTORE_PW="tspass"
-    volumes:
-      - cert-volume:/etc/openelis-global
-
-  oe-database:
-    container_name: openelisglobal-database
-    image: postgres:14.4
-    ports:
-      - "15432:5432"
-    restart: always
-    env_file:
-      - ./volumes/openelis/database/database.env
-    volumes:
-      # preserves the database between containers
-      - db-data:/var/lib/postgresql/data
-        # files here will run on install
-      - ./volumes/openelis/database/dbInit:/docker-entrypoint-initdb.d
-
-    healthcheck:
-      test: ["CMD", "pg_isready", "-q", "-d", "clinlims", "-U", "clinlims"]
-      timeout: 45s
-      interval: 10s
-      retries: 10
-
-  oe.openelis.org:
-    container_name: openelisglobal-webapp
-    image: ghcr.io/i-tech-uw/openelis-global-2:2.7.3.2
-    depends_on:
-      - oe-database
-    ports:
-      - "8080:8080"
-      - "8443:8443"
-    restart: always
-    environment:
-      - TZ=Africa/Nairobi
-        # context.xml doesn't seem to be able to pick up environment variables directly, so we are passing them in as CATALINA_OPTS
-      - CATALINA_OPTS= -Ddatasource.url=jdbc:postgresql://oe-database:5432/clinlims -Ddatasource.username=clinlims -Ddatasource.password=clinlims
-    volumes:
-      - cert-volume:/etc/openelis-global
-      # -  openelis-plugins-data:/var/lib/openelis-global/plugins
-      - ./volumes/openelis/tomcat/oe_server.xml:/usr/local/tomcat/conf/server.xml
-    secrets:
-      - source: datasource.password
-      - source: common.properties
-
-
-  fhir.openelis.org:
-    container_name: external-fhir-api
-    image: hapiproject/hapi:v5.5.1
-    # ports:
-    # - "8081:8080"
-    restart: always
-    environment:
-      - hapi.fhir.auto_create_placeholder_reference_targets=true
-      - hapi.fhir.allow_placeholder_references=true
-      - hapi.fhir.allow_external_references=true
-
-
-  fhir.openelis.org.remote:
-    container_name: openelis-remote-source
-    image: hapiproject/hapi:v5.5.1
-    # ports:
-    #   - "8081:8080"
-    restart: always
-    environment:
-      - hapi.fhir.auto_create_placeholder_reference_targets=true
-      - hapi.fhir.allow_placeholder_references=true
-      - hapi.fhir.allow_external_references=true
-
-
-secrets:
-  datasource.password:
-    file: ./volumes/openelis/properties/datasource.password
-  common.properties:
-    file: ./volumes/openelis/properties/common.properties
-
-volumes:
-  db-data:
-  cert-volume:
-  openmrs-referenceapplication-mysql-data:
-  openmrs-referenceapplication-data:
-

emr-isanteplus/config/mysql.cnf

@@ -0,0 +1,62 @@
+# Copyright 2020 Google LLC
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#      http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+# This is a pre-configuration for Docker MySQL to allow BinLog and replication necessary configurations for Debezium to work
+# see ./openmrs-compose.yaml
+# REF: https://github.com/debezium/debezium/blob/master/debezium-connector-mysql/src/test/docker/server-gtids/my.cnf
+
+# For advice on how to change settings please see
+# http://dev.mysql.com/doc/refman/5.7/en/server-configuration-defaults.html
+
+[mysqld]
+#
+# Remove leading # and set to the amount of RAM for the most important data
+# cache in MySQL. Start at 70% of total RAM for dedicated server, else 10%.
+# innodb_buffer_pool_size = 128M
+#
+# Remove leading # to turn on a very important data integrity option: logging
+# changes to the binary log between backups.
+# log_bin
+#
+# Remove leading # to set options mainly useful for reporting servers.
+# The server defaults are faster for transactions and fast SELECTs.
+# Adjust sizes as needed, experiment to find the optimal values.
+# join_buffer_size = 128M
+# sort_buffer_size = 2M
+# read_rnd_buffer_size = 2M
+skip-host-cache
+skip-name-resolve
+#datadir=/var/lib/mysql
+#socket=/var/lib/mysql/mysql.sock
+#secure-file-priv=/var/lib/mysql-files
+user=mysql
+
+# Disabling symbolic-links is recommended to prevent assorted security risks
+symbolic-links=0
+
+#log-error=/var/log/mysqld.log
+#pid-file=/var/run/mysqld/mysqld.pid
+
+# ----------------------------------------------
+# Enable the binlog for replication & CDC
+# ----------------------------------------------
+
+# Enable binary replication log and set the prefix, expiration, and log format.
+# The prefix is arbitrary, expiration can be short for integration tests but would
+# be longer on a production system. Row-level info is required for ingest to work.
+# Server ID is required, but this will vary on production systems
+server-id         = 223344
+log_bin           = mysql-bin
+expire_logs_days  = 1
+binlog_format     = row

emr-isanteplus/docker-compose-mysql.yml

@@ -0,0 +1,34 @@
+  isanteplus-mysql:
+    image: ghcr.io/isanteplus/docker-isanteplus-db:v2.2.1
+    command: mysqld --character-set-server=utf8 --collation-server=utf8_general_ci --sql_mode=""
+    restart: unless-stopped
+    container_name: isanteplus-mysql
+    hostname: isanteplus-mysql
+    healthcheck:
+      test: "exit 0"
+    environment:
+      - MYSQL_DATABASE=openmrs
+      - MYSQL_ROOT_PASSWORD=debezium
+      - MYSQL_USER=mysqluser
+      - MYSQL_PASSWORD=${IPLUS_DB_PW-mysqlpw}
+      - MYSQL_ROOT_HOST=% # Allow docker containers to connect to mysql
+    volumes:
+      - /var/lib/mysql
+    configs:
+      - source: mysql.cnf
+        target: /etc/mysql/conf.d/mysql.cnf
+        
+    networks:
+      - isanteplus
+      - default
+  configs: 
+    mysql.cnf:
+      file: ./config/mysql.cnf
+      name: mysql.cnf-${mysql_cnf_DIGEST:?err}
+      labels:
+        name: isanteplus
+  networks:
+    isanteplus:
+      external: true
+      name: emr-isanteplus
+  default:

emr-isanteplus/docker-compose.dev.yml

@@ -0,0 +1,10 @@
+version: '3.9'
+
+services:
+  emr-isanteplus:
+    ports:
+      - target: 1044
+        published: 1044
+        mode: host
+    environment:
+      - OMRS_DEV_DEBUG_PORT=1044

emr-isanteplus/docker-compose.yml

@@ -0,0 +1,37 @@
+version: '3.9'
+
+services:
+  isanteplus:
+    image: ghcr.io/isanteplus/docker-isanteplus-server:v2.3.7
+    restart: unless-stopped
+    environment:
+      - OMRS_JAVA_MEMORY_OPTS="-Xmx8192m -Xms4096m -XX:NewSize=1024m"
+      - OMRS_CONFIG_CONNECTION_SERVER=${OMRS_CONFIG_CONNECTION_SERVER:-isanteplus-mysql}
+      - OMRS_CONFIG_CREATE_DATABASE_USER=false
+      - OMRS_CONFIG_CREATE_TABLES=false
+      - OMRS_CONFIG_ADD_DEMO_DATA=false
+      - OMRS_CONFIG_CONNECTION_URL=jdbc:mysql://${OMRS_CONFIG_CONNECTION_SERVER:-isanteplus-mysql}:3306/openmrs?autoReconnect=true
+      - OMRS_CONFIG_HAS_CURRENT_OPENMRS_DATABASE=true
+      - OMRS_JAVA_SERVER_OPTS="-Dfile.encoding=UTF-8 -server -Djava.security.egd=file:/dev/./urandom -Djava.awt.headless=true -Djava.awt.headlesslib=true"
+      - OMRS_CONFIG_CONNECTION_USERNAME=${OMRS_CONFIG_CONNECTION_USERNAME:-mysqluser}
+      - OMRS_CONFIG_CONNECTION_PASSWORD=${OMRS_CONFIG_CONNECTION_PASSWORD:-mysqlpw}
+    volumes:
+      - /openmrs/data
+    logging:
+      driver: "json-file"
+      options:
+        max-size: "10m"
+    networks:
+      - public    
+      - isanteplus
+      - default
+
+networks:
+  public:
+    name: reverse-proxy_public
+    external: true
+  networks:
+    isanteplus:
+      external: true
+      name: emr-isanteplus
+  default:

emr-isanteplus/package-metadata.json

@@ -0,0 +1,9 @@
+{
+  "id": "emr-isanteplus",
+  "name": "iSantePlus Haiti EMR",
+  "description": "OpenMRS-based EMR for Haiti",
+  "type": "infrastructure",
+  "version": "0.0.1",
+  "dependencies": [],
+  "environmentVariables": {}
+}

emr-isanteplus/swarm.sh

@@ -0,0 +1,80 @@
+#!/bin/bash
+
+declare ACTION=""
+declare MODE=""
+declare COMPOSE_FILE_PATH=""
+declare UTILS_PATH=""
+declare SERVICE_NAMES=()
+
+function init_vars() {
+  ACTION=$1
+  MODE=$2
+
+  COMPOSE_FILE_PATH=$(
+    cd "$(dirname "${BASH_SOURCE[0]}")" || exit
+    pwd -P
+  )
+
+  UTILS_PATH="${COMPOSE_FILE_PATH}/../utils"
+
+  SERVICE_NAMES=(
+    "emr-isanteplus"
+  )
+
+  readonly ACTION
+  readonly MODE
+  readonly COMPOSE_FILE_PATH
+  readonly UTILS_PATH
+  readonly SERVICE_NAMES
+}
+
+# shellcheck disable=SC1091
+function import_sources() {
+  source "${UTILS_PATH}/docker-utils.sh"
+  source "${UTILS_PATH}/log.sh"
+}
+
+function initialize_package() {
+  local package_dev_compose_filename=""
+  if [[ "${MODE}" == "dev" ]]; then
+    log info "Running package in DEV mode"
+    package_dev_compose_filename="docker-compose.dev.yml"
+  else
+    log info "Running package in PROD mode"
+  fi
+
+  (
+    docker::deploy_service "${COMPOSE_FILE_PATH}" "$package_dev_compose_filename"
+    docker::deploy_sanity "${SERVICE_NAMES[@]}"
+  ) || {
+    log error "Failed to deploy package"
+    exit 1
+  }
+}
+
+function destroy_package() {
+  docker::service_destroy "${SERVICE_NAMES[@]}"
+}
+
+main() {
+  init_vars "$@"
+  import_sources
+
+  if [[ "${ACTION}" == "init" ]] || [[ "${ACTION}" == "up" ]]; then
+    log info "Running package in Single node mode"
+
+    initialize_package
+  elif [[ "${ACTION}" == "down" ]]; then
+    log info "Scaling down package"
+
+    docker::scale_services_down "${SERVICE_NAMES[@]}"
+  elif [[ "${ACTION}" == "destroy" ]]; then
+    log info "Destroying package"
+
+    destroy_package
+  else
+    log error "Valid options are: init, up, down, or destroy"
+  fi
+}
+
+main "$@"

get-cli.sh

@@ -0,0 +1,39 @@
+#!/bin/bash
+
+option="${1:-all}"
+cli_version=${2:-latest}
+
+case ${option} in
+linux)
+  echo "Downloading linux binary version: ${cli_version}"
+  curl -L https://github.com/openhie/package-starter-kit/releases/download/"$cli_version"/instant-linux -o instant
+  chmod +x ./instant
+  exit 0
+  ;;
+macos)
+  echo "Downloading macos binary version: ${cli_version}"
+  curl -L https://github.com/openhie/package-starter-kit/releases/download/"$cli_version"/instant-macos -o instant
+  chmod +x ./instant
+  exit 0
+  ;;
+windows)
+  echo "Downloading windows binary version: ${cli_version}"
+  curl -L https://github.com/openhie/package-starter-kit/releases/download/"$cli_version"/instant.exe -o instant.exe
+  chmod +x ./instant.exe
+  exit 0
+  ;;
+all)
+  echo "Downloading all binaries, version: ${cli_version}"
+  curl -L https://github.com/openhie/package-starter-kit/releases/download/"$cli_version"/instant-linux -o instant-linux
+  curl -L https://github.com/openhie/package-starter-kit/releases/download/"$cli_version"/instant-macos -o instant-macos
+  curl -L https://github.com/openhie/package-starter-kit/releases/download/"$cli_version"/instant.exe -o instant.exe
+  chmod +x ./instant-linux
+  chmod +x ./instant-macos
+  chmod +x ./instant.exe
+  exit 0
+  ;;
+--help)
+  echo "Usage: get-cli.sh [linux|macos|windows|all] {cli_version}"
+  exit 0
+  ;;
+esac

identity-access-manager-keycloak/config/grafana.json

@@ -0,0 +1,50 @@
+{
+  "clientId": "${KC_GRAFANA_CLIENT_ID}",
+  "name": "grafana",
+  "description": "",
+  "rootUrl": "${KC_GRAFANA_ROOT_URL}",
+  "adminUrl": "${KC_GRAFANA_ROOT_URL}",
+  "baseUrl": "${KC_GRAFANA_ROOT_URL}",
+  "surrogateAuthRequired": false,
+  "enabled": true,
+  "alwaysDisplayInConsole": false,
+  "clientAuthenticatorType": "client-secret",
+  "secret": "${KC_GRAFANA_CLIENT_SECRET}",
+  "redirectUris": ["${KC_GRAFANA_ROOT_URL}/login/generic_oauth"],
+  "webOrigins": ["${KC_GRAFANA_ROOT_URL}"],
+  "notBefore": 0,
+  "bearerOnly": false,
+  "consentRequired": false,
+  "standardFlowEnabled": true,
+  "implicitFlowEnabled": false,
+  "directAccessGrantsEnabled": true,
+  "serviceAccountsEnabled": false,
+  "publicClient": false,
+  "frontchannelLogout": true,
+  "protocol": "openid-connect",
+  "attributes": {
+    "oidc.ciba.grant.enabled": "false",
+    "post.logout.redirect.uris": "${KC_GRAFANA_ROOT_URL}/login",
+    "client.secret.creation.time": "1672390081",
+    "backchannel.logout.session.required": "true",
+    "oauth2.device.authorization.grant.enabled": "false",
+    "display.on.consent.screen": "false",
+    "backchannel.logout.revoke.offline.tokens": "false",
+    "frontchannel.logout.url": "${KC_GRAFANA_ROOT_URL}/logout"
+  },
+  "authenticationFlowBindingOverrides": {},
+  "fullScopeAllowed": true,
+  "nodeReRegistrationTimeout": -1,
+  "defaultClientScopes": ["web-origins", "acr", "roles", "profile", "email"],
+  "optionalClientScopes": [
+    "address",
+    "phone",
+    "offline_access",
+    "microprofile-jwt"
+  ],
+  "access": {
+    "view": true,
+    "configure": true,
+    "manage": true
+  }
+}

identity-access-manager-keycloak/config/jempi.json

@@ -0,0 +1,49 @@
+{
+  "clientId": "${KC_JEMPI_CLIENT_ID}",
+  "name": "JeMPI",
+  "description": "",
+  "rootUrl": "${KC_JEMPI_ROOT_URL}",
+  "adminUrl": "${KC_JEMPI_ROOT_URL}",
+  "baseUrl": "${KC_JEMPI_ROOT_URL}",
+  "surrogateAuthRequired": false,
+  "enabled": true,
+  "alwaysDisplayInConsole": false,
+  "clientAuthenticatorType": "client-secret",
+  "secret": "${KC_JEMPI_CLIENT_SECRET}",
+  "redirectUris": ["${KC_JEMPI_ROOT_URL}/login"],
+  "webOrigins": ["${KC_JEMPI_ROOT_URL}"],
+  "notBefore": 0,
+  "bearerOnly": false,
+  "consentRequired": false,
+  "standardFlowEnabled": true,
+  "implicitFlowEnabled": false,
+  "directAccessGrantsEnabled": true,
+  "serviceAccountsEnabled": false,
+  "publicClient": false,
+  "frontchannelLogout": true,
+  "protocol": "openid-connect",
+  "attributes": {
+    "oidc.ciba.grant.enabled": "false",
+    "client.secret.creation.time": "1674028783",
+    "backchannel.logout.session.required": "true",
+    "post.logout.redirect.uris": "${KC_JEMPI_ROOT_URL}",
+    "display.on.consent.screen": "false",
+    "oauth2.device.authorization.grant.enabled": "false",
+    "backchannel.logout.revoke.offline.tokens": "false"
+  },
+  "authenticationFlowBindingOverrides": {},
+  "fullScopeAllowed": true,
+  "nodeReRegistrationTimeout": -1,
+  "defaultClientScopes": ["web-origins", "acr", "roles", "profile", "email"],
+  "optionalClientScopes": [
+    "address",
+    "phone",
+    "offline_access",
+    "microprofile-jwt"
+  ],
+  "access": {
+    "view": true,
+    "configure": true,
+    "manage": true
+  }
+}

identity-access-manager-keycloak/config/openhim.json

@@ -0,0 +1,50 @@
+{
+  "clientId": "${KC_OPENHIM_CLIENT_ID}",
+  "name": "OpenHIM",
+  "description": "",
+  "rootUrl": "${KC_OPENHIM_ROOT_URL}",
+  "adminUrl": "${KC_OPENHIM_ROOT_URL}",
+  "baseUrl": "${KC_OPENHIM_ROOT_URL}",
+  "surrogateAuthRequired": false,
+  "enabled": true,
+  "alwaysDisplayInConsole": false,
+  "clientAuthenticatorType": "client-secret",
+  "secret": "${KC_OPENHIM_CLIENT_SECRET}",
+  "redirectUris": ["${KC_OPENHIM_ROOT_URL}"],
+  "webOrigins": ["${KC_OPENHIM_ROOT_URL}"],
+  "notBefore": 0,
+  "bearerOnly": false,
+  "consentRequired": false,
+  "standardFlowEnabled": true,
+  "implicitFlowEnabled": false,
+  "directAccessGrantsEnabled": true,
+  "serviceAccountsEnabled": false,
+  "publicClient": false,
+  "frontchannelLogout": true,
+  "protocol": "openid-connect",
+  "attributes": {
+    "oidc.ciba.grant.enabled": "false",
+    "client.secret.creation.time": "1674028783",
+    "backchannel.logout.session.required": "true",
+    "post.logout.redirect.uris": "${KC_OPENHIM_ROOT_URL}",
+    "display.on.consent.screen": "false",
+    "oauth2.device.authorization.grant.enabled": "false",
+    "backchannel.logout.revoke.offline.tokens": "false",
+    "frontchannel.logout.url": "${KC_OPENHIM_ROOT_URL}/#!/logout"
+  },
+  "authenticationFlowBindingOverrides": {},
+  "fullScopeAllowed": true,
+  "nodeReRegistrationTimeout": -1,
+  "defaultClientScopes": ["web-origins", "acr", "roles", "profile", "email"],
+  "optionalClientScopes": [
+    "address",
+    "phone",
+    "offline_access",
+    "microprofile-jwt"
+  ],
+  "access": {
+    "view": true,
+    "configure": true,
+    "manage": true
+  }
+}

identity-access-manager-keycloak/config/realm.json

@@ -0,0 +1,23 @@
+{
+  "id": "${KC_REALM_NAME}",
+  "realm": "${KC_REALM_NAME}",
+  "displayNameHtml": "<div class=\"kc-logo-text\"><span>Keycloak</span></div>",
+  "enabled": true,
+  "clients": [],
+  "users": [
+    {
+      "email": "test@jembi.org",
+      "username": "test",
+      "enabled": true,
+      "credentials": [
+        {
+          "temporary": false,
+          "type": "password",
+          "value": "dev_password_only"
+        }
+      ],
+      "realmRoles": ["default-roles-${KC_REALM_NAME}"],
+      "clientRoles": {}
+    }
+  ]
+}

identity-access-manager-keycloak/config/superset.json

@@ -0,0 +1,46 @@
+{
+  "clientId": "${KC_SUPERSET_CLIENT_ID}",
+  "name": "superset",
+  "description": "",
+  "rootUrl": "${KC_SUPERSET_ROOT_URL}",
+  "adminUrl": "${KC_SUPERSET_ROOT_URL}",
+  "baseUrl": "${KC_SUPERSET_ROOT_URL}",
+  "surrogateAuthRequired": false,
+  "enabled": true,
+  "alwaysDisplayInConsole": false,
+  "clientAuthenticatorType": "client-secret",
+  "secret": "${KC_SUPERSET_CLIENT_SECRET}",
+  "redirectUris": ["${KC_SUPERSET_ROOT_URL}/oidc_callback"],
+  "webOrigins": ["${KC_SUPERSET_ROOT_URL}"],
+  "notBefore": 0,
+  "bearerOnly": false,
+  "consentRequired": false,
+  "standardFlowEnabled": true,
+  "implicitFlowEnabled": false,
+  "directAccessGrantsEnabled": true,
+  "serviceAccountsEnabled": false,
+  "publicClient": false,
+  "frontchannelLogout": true,
+  "protocol": "openid-connect",
+  "attributes": {
+    "oidc.ciba.grant.enabled": "false",
+    "client.secret.creation.time": "1674028783",
+    "backchannel.logout.session.required": "true",
+    "post.logout.redirect.uris": "${KC_SUPERSET_ROOT_URL}/login/",
+    "display.on.consent.screen": "false",
+    "oauth2.device.authorization.grant.enabled": "false",
+    "backchannel.logout.revoke.offline.tokens": "false",
+    "frontchannel.logout.url": "${KC_SUPERSET_ROOT_URL}/backchannel-logout/"
+  },
+  "authenticationFlowBindingOverrides": {},
+  "fullScopeAllowed": true,
+  "nodeReRegistrationTimeout": -1,
+  "defaultClientScopes": ["web-origins", "acr", "roles", "profile", "email"],
+  "optionalClientScopes": [
+    "address",
+    "phone",
+    "offline_access",
+    "microprofile-jwt"
+  ],
+  "access": { "view": true, "configure": true, "manage": true }
+}

identity-access-manager-keycloak/docker-compose-postgres.cluster.yml

@@ -0,0 +1,75 @@
+version: '3.9'
+
+services:
+  keycloak-postgres-1:
+    environment:
+      REPMGR_PARTNER_NODES: ${KC_REPMGR_PARTNER_NODES}
+    deploy:
+      placement:
+        constraints:
+          - "node.labels.name==node-1"
+
+  keycloak-postgres-2:
+    image: bitnami/postgresql-repmgr:14
+    environment:
+      POSTGRESQL_PASSWORD: ${KC_POSTGRESQL_PASSWORD}
+      POSTGRESQL_USERNAME: ${KC_POSTGRESQL_USERNAME}
+      POSTGRESQL_DATABASE: ${KC_POSTGRESQL_DATABASE}
+      REPMGR_NODE_NETWORK_NAME: keycloak-postgres-2
+      REPMGR_PASSWORD: ${KC_REPMGR_PASSWORD}
+      REPMGR_RECONNECT_INTERVAL: 3
+      REPMGR_NODE_NAME: keycloak-postgres-2
+      REPMGR_PRIMARY_HOST: ${KC_REPMGR_PRIMARY_HOST}
+      REPMGR_PARTNER_NODES: ${KC_REPMGR_PARTNER_NODES}
+    volumes:
+      - 'keycloak-postgres-2-data:/bitnami/postgresql'
+    deploy:
+      placement:
+        constraints:
+          - "node.labels.name==node-2"
+      replicas: 1
+      resources:
+        limits:
+          cpus: ${KC_POSTGRES_CPU_LIMIT}
+          memory: ${KC_POSTGRES_MEMORY_LIMIT}
+        reservations:
+          cpus: ${KC_POSTGRES_CPU_RESERVE}
+          memory: ${KC_POSTGRES_MEMORY_RESERVE}
+    networks:
+      default:
+      keycloak_backup_net: {}
+
+
+  keycloak-postgres-3:
+    image: bitnami/postgresql-repmgr:14
+    environment:
+      POSTGRESQL_PASSWORD: ${KC_POSTGRESQL_PASSWORD}
+      POSTGRESQL_USERNAME: ${KC_POSTGRESQL_USERNAME}
+      POSTGRESQL_DATABASE: ${KC_POSTGRESQL_DATABASE}
+      REPMGR_NODE_NETWORK_NAME: keycloak-postgres-3
+      REPMGR_PASSWORD: ${KC_REPMGR_PASSWORD}
+      REPMGR_RECONNECT_INTERVAL: 3
+      REPMGR_NODE_NAME: keycloak-postgres-3
+      REPMGR_PRIMARY_HOST: ${KC_REPMGR_PRIMARY_HOST}
+      REPMGR_PARTNER_NODES: ${KC_REPMGR_PARTNER_NODES}
+    volumes:
+      - 'keycloak-postgres-3-data:/bitnami/postgresql'
+    deploy:
+      placement:
+        constraints:
+          - "node.labels.name==node-3"
+      replicas: 1
+      resources:
+        limits:
+          cpus: ${KC_POSTGRES_CPU_LIMIT}
+          memory: ${KC_POSTGRES_MEMORY_LIMIT}
+        reservations:
+          cpus: ${KC_POSTGRES_CPU_RESERVE}
+          memory: ${KC_POSTGRES_MEMORY_RESERVE}
+    networks:
+      default:
+      keycloak_backup_net: {}
+
+volumes:
+  keycloak-postgres-2-data:
+  keycloak-postgres-3-data:

identity-access-manager-keycloak/docker-compose-postgres.dev.yml

@@ -0,0 +1,8 @@
+version: '3.9'
+
+services:
+  keycloak-postgres-1:
+    ports:
+      - target: 5432
+        published: 5434
+        mode: host

identity-access-manager-keycloak/docker-compose-postgres.yml

@@ -0,0 +1,40 @@
+version: "3.9"
+
+services:
+  keycloak-postgres-1:
+    image: bitnami/postgresql-repmgr:14
+    environment:
+      POSTGRESQL_PASSWORD: ${KC_POSTGRESQL_PASSWORD}
+      POSTGRESQL_USERNAME: ${KC_POSTGRESQL_USERNAME}
+      POSTGRESQL_DATABASE: ${KC_POSTGRESQL_DATABASE}
+      POSTGRESQL_POSTGRES_PASSWORD: ${KC_POSTGRESQL_PASSWORD}
+      REPMGR_NODE_NETWORK_NAME: keycloak-postgres-1
+      REPMGR_PASSWORD: ${KC_REPMGR_PASSWORD}
+      REPMGR_RECONNECT_INTERVAL: 3
+      REPMGR_NODE_NAME: keycloak-postgres-1
+      REPMGR_PRIMARY_HOST: ${KC_REPMGR_PRIMARY_HOST}
+      REPMGR_PARTNER_NODES: ${KC_REPMGR_PARTNER_NODES}
+    volumes:
+      - "keycloak-postgres-1-data:/bitnami/postgresql"
+    deploy:
+      replicas: 1
+      resources:
+        limits:
+          cpus: ${KC_POSTGRES_CPU_LIMIT}
+          memory: ${KC_POSTGRES_MEMORY_LIMIT}
+        reservations:
+          cpus: ${KC_POSTGRES_CPU_RESERVE}
+          memory: ${KC_POSTGRES_MEMORY_RESERVE}
+    networks:
+      default:
+      keycloak_backup_net: {}
+
+volumes:
+  keycloak-postgres-1-data:
+
+networks:
+  default:
+  keycloak_backup_net:
+    name: keycloak_backup
+    driver: overlay
+    attachable: true

identity-access-manager-keycloak/docker-compose.dev.yml

@@ -0,0 +1,8 @@
+version: '3.9'
+
+services:
+  identity-access-manager-keycloak:
+    ports:
+      - target: 8080
+        published: 9088
+        mode: host

identity-access-manager-keycloak/docker-compose.yml

@@ -0,0 +1,67 @@
+version: '3.9'
+
+services:
+  identity-access-manager-keycloak:
+    image: keycloak/keycloak:20.0
+    command:
+      [
+        "start",
+        "--proxy=edge",
+        "--hostname-url=${KC_FRONTEND_URL}",
+        "--import-realm"
+      ]
+    hostname: identity-access-manager-keycloak
+    healthcheck:
+      test: curl --fail http://localhost:8080/health/ready || exit 1
+      interval: 10s
+      timeout: 5s
+      retries: 5
+      start_period: 30s
+    configs:
+      - target: /opt/keycloak/data/import/realm.json
+        source: realm.json
+    environment:
+      KC_DB: postgres
+      KC_DB_USERNAME: ${KC_POSTGRESQL_USERNAME}
+      KC_DB_PASSWORD: ${KC_POSTGRESQL_PASSWORD}
+      KC_DB_URL: "jdbc:postgresql://${KC_POSTGRES_REPLICA_SET}/${KC_POSTGRESQL_DATABASE}?targetServerType=primary"
+      KC_METRICS_ENABLED: "true"
+      KC_HEALTH_ENABLED: "true"
+      KC_REALM_NAME: ${KC_REALM_NAME}
+      KEYCLOAK_ADMIN: ${KEYCLOAK_ADMIN}
+      KEYCLOAK_ADMIN_PASSWORD: ${KEYCLOAK_ADMIN_PASSWORD}
+      KC_GRAFANA_CLIENT_ID: ${KC_GRAFANA_CLIENT_ID}
+      KC_GRAFANA_CLIENT_SECRET: ${KC_GRAFANA_CLIENT_SECRET}
+      KC_GRAFANA_ROOT_URL: ${KC_GRAFANA_ROOT_URL}
+      KC_JEMPI_CLIENT_ID: ${KC_JEMPI_CLIENT_ID}
+      KC_JEMPI_CLIENT_SECRET: ${KC_JEMPI_CLIENT_SECRET}
+      KC_JEMPI_ROOT_URL: ${KC_JEMPI_ROOT_URL}
+      KC_SUPERSET_CLIENT_ID: ${KC_SUPERSET_CLIENT_ID}
+      KC_SUPERSET_CLIENT_SECRET: ${KC_SUPERSET_CLIENT_SECRET}
+      KC_SUPERSET_ROOT_URL: ${KC_SUPERSET_ROOT_URL}
+      KC_OPENHIM_CLIENT_ID: ${KC_OPENHIM_CLIENT_ID}
+      KC_OPENHIM_CLIENT_SECRET: ${KC_OPENHIM_CLIENT_SECRET}
+      KC_OPENHIM_ROOT_URL: ${KC_OPENHIM_ROOT_URL}
+    deploy:
+      placement:
+        max_replicas_per_node: 1
+    networks:
+      reverse-proxy:
+      public:
+      default:
+
+configs:
+  realm.json:
+    file: ./config/realm.json
+    name: realm.json-${realm_json_DIGEST:?err}
+    labels:
+      name: keycloak
+
+networks:
+  reverse-proxy:
+    name: reverse-proxy_public
+    external: true
+  public:
+    name: keycloak_public
+    external: true
+  default:

identity-access-manager-keycloak/package-metadata.json

@@ -0,0 +1,45 @@
+{
+  "id": "identity-access-manager-keycloak",
+  "name": "Identity Access Manager Keycloak",
+  "description": "An identity and access management solution",
+  "type": "infrastructure",
+  "version": "0.0.1",
+  "dependencies": [],
+  "environmentVariables": {
+    "KEYCLOAK_ADMIN": "admin",
+    "KEYCLOAK_ADMIN_PASSWORD": "dev_password_only",
+    "KC_FRONTEND_URL": "http://localhost:9088",
+    "KC_REALM_NAME": "platform-realm",
+    "KC_REPMGR_PRIMARY_HOST": "keycloak-postgres-1",
+    "KC_REPMGR_PARTNER_NODES": "keycloak-postgres-1",
+    "KC_REPMGR_PASSWORD": "instant101",
+    "KC_POSTGRES_REPLICA_SET": "keycloak-postgres-1:5432",
+    "KC_POSTGRES_CPU_LIMIT": "0",
+    "KC_POSTGRES_CPU_RESERVE": "0.05",
+    "KC_POSTGRES_MEMORY_LIMIT": "3G",
+    "KC_POSTGRES_MEMORY_RESERVE": "500M",
+    "KC_POSTGRESQL_PASSWORD": "instant101",
+    "KC_POSTGRESQL_USERNAME": "admin",
+    "KC_POSTGRESQL_DATABASE": "keycloak",
+    "KC_GRAFANA_SSO_ENABLED": "false",
+    "KC_GRAFANA_CLIENT_ID": "grafana-oauth",
+    "KC_GRAFANA_CLIENT_SECRET": "CV14QfwnpYFj1IH5dK5lScPNCYAIYP1c",
+    "KC_GRAFANA_ROOT_URL": "http://localhost:3000",
+    "KC_GRAFANA_CLIENT_ROLES": "admin,editor,viewer",
+    "KC_JEMPI_SSO_ENABLED": "false",
+    "KC_JEMPI_CLIENT_ID": "jempi-oauth",
+    "KC_JEMPI_CLIENT_SECRET": "Tbe3llP5OJIlqUjz7K1wPp8YDAdCOEMn",
+    "KC_JEMPI_ROOT_URL": "http://localhost:3033",
+    "KC_JEMPI_CLIENT_ROLES": "admin",
+    "KC_SUPERSET_SSO_ENABLED": "false",
+    "KC_SUPERSET_CLIENT_ID": "superset-oauth",
+    "KC_SUPERSET_CLIENT_SECRET": "g0J7oLbX69dL3CS8HVjRYlhRYVsPoDbQ",
+    "KC_SUPERSET_ROOT_URL": "http://localhost:8089",
+    "KC_SUPERSET_CLIENT_ROLES": "admin",
+    "KC_OPENHIM_SSO_ENABLED": "true",
+    "KC_OPENHIM_CLIENT_ID": "openhim-oauth",
+    "KC_OPENHIM_CLIENT_SECRET": "tZKfEbWf0Ka5HBNZwFrdSyQH2xT1sNMR",
+    "KC_OPENHIM_ROOT_URL": "http://localhost:9000",
+    "KC_OPENHIM_CLIENT_ROLES": "admin"
+  }
+}

identity-access-manager-keycloak/swarm.sh

@@ -0,0 +1,126 @@
+#!/bin/bash
+
+declare ACTION=""
+declare MODE=""
+declare COMPOSE_FILE_PATH=""
+declare UTILS_PATH=""
+declare STACK="keycloak"
+
+function init_vars() {
+  ACTION=$1
+  MODE=$2
+
+  COMPOSE_FILE_PATH=$(
+    cd "$(dirname "${BASH_SOURCE[0]}")" || exit
+    pwd -P
+  )
+
+  UTILS_PATH="${COMPOSE_FILE_PATH}/../utils"
+
+  readonly ACTION
+  readonly MODE
+  readonly COMPOSE_FILE_PATH
+  readonly UTILS_PATH
+}
+
+# shellcheck disable=SC1091
+function import_sources() {
+  source "${UTILS_PATH}/docker-utils.sh"
+  source "${UTILS_PATH}/config-utils.sh"
+  source "${UTILS_PATH}/log.sh"
+}
+
+function append_client_config() {
+  local -r CONFIG_NAME="${1:?$(missing_param "append_client_config" "CONFIG_NAME")}"
+  local -r CLIENT_ID_ENV_NAME="${2:?$(missing_param "append_client_config" "CLIENT_ID_ENV_NAME")}"
+  local -r CLIENT_ROLES_ENV_NAME="${3:?$(missing_param "append_client_config" "CLIENT_ROLES_ENV_NAME")}"
+
+  # Comma separate env var and quote the values
+  IFS=',' read -r -a client_roles_array <<<"$CLIENT_ROLES_ENV_NAME"
+  client_roles_quoted=$(jq --compact-output --null-input '$ARGS.positional' --args -- "${client_roles_array[@]}")
+  # Append clients configs
+  yq ".clients += [load(\"${COMPOSE_FILE_PATH}/config/$CONFIG_NAME.json\")]" "${COMPOSE_FILE_PATH}/config/realm.json" >tmp.json
+  # Append clients roles
+  jq ".users[0].clientRoles += {\"$CLIENT_ID_ENV_NAME\": ${client_roles_quoted[*]}}" tmp.json >"${COMPOSE_FILE_PATH}/config/realm.json"
+  rm -f tmp.json
+}
+
+function append_config_sso_enabled() {
+  if [[ "${KC_GRAFANA_SSO_ENABLED}" == "true" ]]; then
+    append_client_config "grafana" "$KC_GRAFANA_CLIENT_ID" "$KC_GRAFANA_CLIENT_ROLES"
+  fi
+  if [[ "${KC_SUPERSET_SSO_ENABLED}" == "true" ]]; then
+    append_client_config "superset" "$KC_SUPERSET_CLIENT_ID" "$KC_SUPERSET_CLIENT_ROLES"
+  fi
+  if [[ "${KC_JEMPI_SSO_ENABLED}" == "true" ]]; then
+    append_client_config "jempi" "$KC_JEMPI_CLIENT_ID" "$KC_JEMPI_CLIENT_ROLES"
+  fi
+  if [[ "${KC_OPENHIM_SSO_ENABLED}" == "true" ]]; then
+    append_client_config "openhim" "$KC_OPENHIM_CLIENT_ID" "$KC_OPENHIM_CLIENT_ROLES"
+  fi
+}
+
+function initialize_package() {
+  local postgres_cluster_compose_filename=""
+  local postgres_dev_compose_filename=""
+  local keycloak_dev_compose_filename=""
+
+  if [ "${MODE}" == "dev" ]; then
+    log info "Running package in DEV mode"
+    postgres_dev_compose_filename="docker-compose-postgres.dev.yml"
+    keycloak_dev_compose_filename="docker-compose.dev.yml"
+  else
+    log info "Running package in PROD mode"
+  fi
+
+  if [ "${CLUSTERED_MODE}" == "true" ]; then
+    postgres_cluster_compose_filename="docker-compose-postgres.cluster.yml"
+  fi
+
+  append_config_sso_enabled
+
+  (
+    docker::deploy_service $STACK "${COMPOSE_FILE_PATH}" "docker-compose-postgres.yml" "$postgres_cluster_compose_filename" "$postgres_dev_compose_filename"
+    docker::deploy_service $STACK "${COMPOSE_FILE_PATH}" "docker-compose.yml" "$keycloak_dev_compose_filename"
+  ) ||
+    {
+      log error "Failed to deploy package"
+      exit 1
+    }
+}
+
+function destroy_package() {
+  docker::stack_destroy $STACK
+
+  if [[ "${CLUSTERED_MODE}" == "true" ]]; then
+    log warn "Volumes are only deleted on the host on which the command is run. Postgres volumes on other nodes are not deleted"
+  fi
+
+  docker::prune_configs "keycloak"
+}
+
+main() {
+  init_vars "$@"
+  import_sources
+
+  if [[ "${ACTION}" == "init" ]] || [[ "${ACTION}" == "up" ]]; then
+    if [[ "${CLUSTERED_MODE}" == "true" ]]; then
+      log info "Running package in Cluster node mode"
+    else
+      log info "Running package in Single node mode"
+    fi
+
+    initialize_package
+  elif [[ "${ACTION}" == "down" ]]; then
+    log info "Scaling down package"
+
+    docker::scale_services $STACK 0
+  elif [[ "${ACTION}" == "destroy" ]]; then
+    log info "Destroying package"
+    destroy_package
+  else
+    log error "Valid options are: init, up, down, or destroy"
+  fi
+}
+
+main "$@"

interoperability-layer-openhim/README.md

@@ -0,0 +1,66 @@
+
+# Interoperability Layer - OpenHIM
+
+The Interoperability Layer is the base of the Platform architecture.
+
+This component consists of two services:
+
+* Interoperability Layer - [OpenHIM](http://openhim.org/)
+
+## Accessing the services
+
+### OpenHIM
+
+* Console: <http://localhost:9000>
+* Username: **root@openhim.org**
+* Password: **instant101**
+
+## Testing the Interoperability Component
+
+As part of the Interoperability Layer setup we also do some initial config import for connecting the services together.
+
+* OpenHIM: Import a channel configuration that routes requests to the Data Store - HAPI FHIR service
+
+## Backup restore
+
+### Single node
+
+[Single node restore docs](https://www.mongodb.com/docs/v4.2/tutorial/backup-and-restore-tools/)
+
+The following job may be used to set up a backup job for a single node mongo
+
+```ini
+[job-run "mongo-backup"]
+schedule= @every 24h
+image= mongo:4.2
+network= mongo_backup
+volume= /backups:/tmp/backups
+command= sh -c 'mongodump --uri=${OPENHIM_MONGO_URL} --gzip --archive=/tmp/backups/mongodump_$(date +%s).gz'
+delete= true
+```
+
+### Cluster
+
+[Cluster restore docs](https://www.mongodb.com/docs/v4.2/tutorial/restore-replica-set-from-backup/)
+
+The following job may be used to set up a backup job for clustered mongo
+
+```ini
+[job-run "mongo-backup"]
+schedule= @every 24h
+image= mongo:4.2
+network= mongo_backup
+volume= /backups:/tmp/backups
+command= sh -c 'mongodump --uri=${OPENHIM_MONGO_URL} --gzip --archive=/tmp/backups/mongodump_$(date +%s).gz'
+delete= true
+```
+
+### Restore
+
+In order to restore from a backup you would need to launch a mongo container with access to the backup file and the mongo_backup network:
+
+`docker run -d --network=mongo_backup --mount type=bind,source=/backups,target=/backups mongo:4.2`
+
+Then exec into the container and run mongorestore:
+
+`mongorestore --uri="mongodb://mongo-1:27017,mongo-2:27017,mongo-3:27017/openhim?replicaSet=mongo-set" --gzip --archive=/backups/<NAME_OF_BACKUP_FILE>`

interoperability-layer-openhim/docker-compose-mongo.cluster.yml

@@ -0,0 +1,61 @@
+version: '3.9'
+
+services:
+  mongo-1:
+    command: ['--replSet', 'mongo-set', '--wiredTigerCacheSizeGB', '0.5']
+    deploy:
+      placement:
+        constraints:
+          - "node.labels.name==node-1"
+
+  mongo-2:
+    image: mongo:4.2
+    volumes:
+      - 'openhim-mongo-02:/data/db'
+      - 'openhim-mongo-02-config:/data/configdb'
+    command: ['--replSet', 'mongo-set', '--wiredTigerCacheSizeGB', '0.5']
+    deploy:
+      placement:
+        constraints:
+          - "node.labels.name==node-2"
+      replicas: 1
+      resources:
+        limits:
+          cpus: ${OPENHIM_MONGO_CPU_LIMIT}
+          memory: ${OPENHIM_MONGO_MEMORY_LIMIT}
+        reservations:
+          cpus: ${OPENHIM_MONGO_CPU_RESERVE}
+          memory: ${OPENHIM_MONGO_MEMORY_RESERVE}
+    networks:
+      default:
+      openhim-mongo:
+      mongo_backup_net:
+
+  mongo-3:
+    image: mongo:4.2
+    volumes:
+      - 'openhim-mongo-03:/data/db'
+      - 'openhim-mongo-03-config:/data/configdb'
+    command: ['--replSet', 'mongo-set', '--wiredTigerCacheSizeGB', '0.5']
+    deploy:
+      placement:
+        constraints:
+          - "node.labels.name==node-3"
+      replicas: 1
+      resources:
+        limits:
+          cpus: ${OPENHIM_MONGO_CPU_LIMIT}
+          memory: ${OPENHIM_MONGO_MEMORY_LIMIT}
+        reservations:
+          cpus: ${OPENHIM_MONGO_CPU_RESERVE}
+          memory: ${OPENHIM_MONGO_MEMORY_RESERVE}
+    networks:
+      default:
+      openhim-mongo:
+      mongo_backup_net:
+
+volumes:
+  openhim-mongo-02:
+  openhim-mongo-03:
+  openhim-mongo-02-config:
+  openhim-mongo-03-config:

interoperability-layer-openhim/docker-compose-mongo.dev.yml

@@ -0,0 +1,8 @@
+version: '3.9'
+
+services:
+  mongo-1:
+    ports:
+      - target: 27017
+        published: 27017
+        mode: host

interoperability-layer-openhim/docker-compose-mongo.yml

@@ -0,0 +1,35 @@
+version: "3.9"
+
+services:
+  mongo-1:
+    image: mongo:4.2
+    volumes:
+      - "openhim-mongo-01:/data/db"
+      - "openhim-mongo-01-config:/data/configdb"
+    deploy:
+      replicas: 1
+      resources:
+        limits:
+          cpus: ${OPENHIM_MONGO_CPU_LIMIT}
+          memory: ${OPENHIM_MONGO_MEMORY_LIMIT}
+        reservations:
+          cpus: ${OPENHIM_MONGO_CPU_RESERVE}
+          memory: ${OPENHIM_MONGO_MEMORY_RESERVE}
+    networks:
+      default:
+      openhim-mongo:
+      mongo_backup_net:
+
+volumes:
+  openhim-mongo-01:
+  openhim-mongo-01-config:
+
+networks:
+  default:
+  openhim-mongo:
+    name: openhim_mongo_public
+    external: true
+  mongo_backup_net:
+    name: mongo_backup
+    driver: overlay
+    attachable: true

interoperability-layer-openhim/docker-compose.await-helper.yml

@@ -0,0 +1,10 @@
+version: '3.9'
+
+services:
+  await-helper:
+    image: jembi/await-helper:1.0.1
+    deploy:
+      replicas: 1
+      restart_policy:
+        condition: none
+    command: '-k https://openhim-core:8080/heartbeat'

interoperability-layer-openhim/docker-compose.dev.yml

@@ -0,0 +1,29 @@
+version: '3.9'
+
+services:
+  openhim-core:
+    ports:
+      - target: 8080
+        published: 8080
+        mode: host
+      - target: 5000
+        published: 5000
+        mode: host
+      - target: 5001
+        published: 5001
+        mode: host
+      - target: 5050
+        published: 5050
+        mode: host
+      - target: 5051
+        published: 5051
+        mode: host
+      - target: 5052
+        published: 5052
+        mode: host
+
+  openhim-console:
+    ports:
+      - target: 80
+        published: 9000
+        mode: host

interoperability-layer-openhim/docker-compose.yml

@@ -0,0 +1,77 @@
+version: '3.9'
+
+services:
+  openhim-core:
+    image: jembi/openhim-core:v8.0.1
+    networks:
+      kafka:
+      hapi-fhir:
+      reverse-proxy:
+      keycloak:
+      public:
+      default:
+    environment:
+      - mongo_url=${OPENHIM_MONGO_URL}
+      - mongo_atnaUrl=${OPENHIM_MONGO_ATNAURL}
+      - api_authenticationTypes=["token", "basic", "openid", "local"]
+      - authentication_enableCustomTokenAuthentication=true
+      - router_kafkaBrokers=${KAFKA_HOSTS}
+      - api_openid_url=${KC_FRONTEND_URL}/realms/${KC_REALM_NAME}
+      - api_openid_callbackUrl=${KC_OPENHIM_ROOT_URL}
+      - api_openid_clientId=${KC_OPENHIM_CLIENT_ID}
+      - api_openid_clientSecret=${KC_OPENHIM_CLIENT_SECRET}
+    deploy:
+      replicas: ${OPENHIM_CORE_INSTANCES}
+      placement:
+        max_replicas_per_node: 1
+      resources:
+        limits:
+          cpus: ${OPENHIM_CPU_LIMIT}
+          memory: ${OPENHIM_MEMORY_LIMIT}
+        reservations:
+          cpus: ${OPENHIM_CPU_RESERVE}
+          memory: ${OPENHIM_MEMORY_RESERVE}
+
+  openhim-console:
+    image: jembi/openhim-console:v1.18.2
+    environment:
+      OPENHIM_CORE_MEDIATOR_HOSTNAME: ${OPENHIM_CORE_MEDIATOR_HOSTNAME}
+      OPENHIM_MEDIATOR_API_PORT: ${OPENHIM_MEDIATOR_API_PORT}
+      KC_OPENHIM_SSO_ENABLED: ${KC_OPENHIM_SSO_ENABLED}
+      KC_OPENHIM_CLIENT_ID: ${KC_OPENHIM_CLIENT_ID}
+      KC_REALM_NAME: ${KC_REALM_NAME}
+      KC_FRONTEND_URL: ${KC_FRONTEND_URL}
+    networks:
+      reverse-proxy:
+      keycloak:
+      public:
+      default:
+    deploy:
+      replicas: ${OPENHIM_CONSOLE_INSTANCES}
+      placement:
+        max_replicas_per_node: 1
+      resources:
+        limits:
+          cpus: ${OPENHIM_CONSOLE_CPU_LIMIT}
+          memory: ${OPENHIM_CONSOLE_MEMORY_LIMIT}
+        reservations:
+          cpus: ${OPENHIM_CONSOLE_CPU_RESERVE}
+          memory: ${OPENHIM_CONSOLE_MEMORY_RESERVE}
+
+networks:
+  kafka:
+    name: kafka_public
+    external: true
+  hapi-fhir:
+    name: hapi-fhir_public
+    external: true
+  reverse-proxy:
+    name: reverse-proxy_public
+    external: true
+  keycloak:
+    name: keycloak_public
+    external: true
+  public:
+    name: openhim_public
+    external: true
+  default:

interoperability-layer-openhim/features/core.feature

@@ -0,0 +1,15 @@
+Feature: FHIR server available via OpenHIM
+
+  Rule: Authorised clients should be able to access the FHIR server through the OpenHIM
+
+    Scenario: An authorised client searches for a patient
+      Given a patient, Jane Doe, exists in the FHIR server
+      And an authorised client, Alice, exists in the OpenHIM
+      When Alice searches for a patient
+      Then Alice is able to get a result
+
+    Scenario: An un-authorised client searches for a patient
+      Given a patient, Jane Doe, exists in the FHIR server
+      And an authorised client, Alice, exists in the OpenHIM
+      When Malice searches for a patient
+      Then Malice is NOT able to get a result

interoperability-layer-openhim/features/core.js

@@ -0,0 +1,228 @@
+'use strict'
+
+const axios = require('axios')
+
+const { AfterAll, Given, Then, When } = require('@cucumber/cucumber')
+const { expect } = require('chai')
+
+const OPENHIM_PROTOCOL = process.env.OPENHIM_PROTOCOL || 'http'
+const OPENHIM_CORE_SERVICE_NAME = process.env.OPENHIM_CORE_SERVICE_NAME || 'localhost'
+const OPENHIM_TRANSACTION_API_PORT =
+  process.env.OPENHIM_TRANSACTION_API_PORT || '5001'
+const OPENHIM_MEDIATOR_API_PORT =
+  process.env.OPENHIM_MEDIATOR_API_PORT || '8080'
+const CUSTOM_TOKEN_ID = process.env.CUSTOM_TOKEN_ID || 'test'
+const BASIC_AUTH_HEADER =
+  process.env.BASIC_AUTH_HEADER || 'Basic cm9vdEBvcGVuaGltLm9yZzppbnN0YW50MTAx'
+
+// Save test Patient resource ID for post test cleanup
+let hapiFhirPatientID
+
+Given('a patient, Jane Doe, exists in the FHIR server', async function () {
+  const checkPatientExistsOptions = {
+    url: `${OPENHIM_PROTOCOL}://${OPENHIM_CORE_SERVICE_NAME}:${OPENHIM_TRANSACTION_API_PORT}/fhir/Patient?identifier:value=test`,
+    method: 'GET',
+    headers: {
+      'Content-Type': 'application/json',
+      Authorization: `Custom ${CUSTOM_TOKEN_ID}`,
+      'Cache-Control': 'no-cache'
+    }
+  }
+
+  const checkPatientExistsResponse = await axios(checkPatientExistsOptions)
+
+  if (checkPatientExistsResponse.data.total === 0) {
+    console.log(
+      `\nPatient record for Jane Doe does not exist. Creating Patient`
+    )
+    const options = {
+      url: `${OPENHIM_PROTOCOL}://${OPENHIM_CORE_SERVICE_NAME}:${OPENHIM_TRANSACTION_API_PORT}/fhir/Patient`,
+      method: 'POST',
+      headers: {
+        'Content-Type': 'application/json',
+        Authorization: `Custom ${CUSTOM_TOKEN_ID}`,
+        'Cache-Control': 'no-cache'
+      },
+      data: {
+        resourceType: 'Patient',
+        name: {
+          use: 'temp',
+          family: 'Doe',
+          given: ['Jane']
+        },
+        identifier: {
+          use: 'temp',
+          value: 'test'
+        },
+        gender: 'male'
+      }
+    }
+
+    const createPatientResponse = await axios(options)
+
+    expect(createPatientResponse.status).to.eql(201)
+
+    hapiFhirPatientID = createPatientResponse.data.id
+  } else if (checkPatientExistsResponse.data.total === 1) {
+    console.log(`\nPatient record for Jane Doe already exists`)
+
+    expect(
+      checkPatientExistsResponse.data.entry[0].resource.name[0].given
+    ).to.eql(['Jane'])
+    expect(
+      checkPatientExistsResponse.data.entry[0].resource.name[0].family
+    ).to.eql('Doe')
+
+    hapiFhirPatientID = checkPatientExistsResponse.data.entry[0].resource.id
+  } else {
+    // Previous test data should have been cleaned out
+    throw new Error(
+      `Multiple Patient records for Jane Doe exist: ${checkPatientExistsResponse.data.total}`
+    )
+  }
+})
+
+Given('an authorised client, Alice, exists in the OpenHIM', async function () {
+  process.env.NODE_TLS_REJECT_UNAUTHORIZED = 0
+  const checkClientExistsOptions = {
+    url: `https://${OPENHIM_CORE_SERVICE_NAME}:${OPENHIM_MEDIATOR_API_PORT}/clients`,
+    method: 'GET',
+    headers: {
+      'Content-Type': 'application/json',
+      Authorization: BASIC_AUTH_HEADER
+    }
+  }
+
+  const checkClientExistsResponse = await axios(checkClientExistsOptions)
+
+  let createClient = true
+
+  for (let client of checkClientExistsResponse.data) {
+    if (client.clientID === 'test-harness-client') {
+      expect(client.name).to.eql('Alice')
+      createClient = false
+      break
+    }
+  }
+
+  if (createClient) {
+    console.log(`\nThe test Harness Client does not exist. Creating Client`)
+    const options = {
+      url: `https://${OPENHIM_CORE_SERVICE_NAME}:${OPENHIM_MEDIATOR_API_PORT}/clients`,
+      method: 'POST',
+      headers: {
+        'Content-Type': 'application/json',
+        Authorization: BASIC_AUTH_HEADER
+      },
+      data: {
+        roles: ['instant'],
+        clientID: 'test-harness-client',
+        name: 'Alice',
+        customTokenID: 'test-harness-token'
+      }
+    }
+
+    const response = await axios(options)
+    expect(response.status).to.eql(201)
+  } else {
+    console.log(`\nThe Test Harness Client (Alice) already exists`)
+  }
+})
+
+When('Alice searches for a patient', async function () {
+  const checkPatientExistsOptions = {
+    url: `${OPENHIM_PROTOCOL}://${OPENHIM_CORE_SERVICE_NAME}:${OPENHIM_TRANSACTION_API_PORT}/fhir/Patient?identifier:value=test`,
+    method: 'GET',
+    headers: {
+      'Content-Type': 'application/json',
+      Authorization: `Custom test-harness-token`,
+      'Cache-Control': 'no-cache'
+    }
+  }
+  const checkPatientExistsResponse = await axios(checkPatientExistsOptions)
+  expect(checkPatientExistsResponse.status).to.eql(200)
+  this.setTo(checkPatientExistsResponse.data.entry[0])
+})
+
+Then('Alice is able to get a result', function () {
+  expect(this.searchResults.resource.resourceType).equal('Patient')
+  expect(this.searchResults.resource.identifier[0].value).equal('test')
+  expect(this.searchResults.resource.name[0].given[0]).equal('Jane')
+  expect(this.searchResults.resource.name[0].family).equal('Doe')
+})
+
+When('Malice searches for a patient', async function () {
+  const checkPatientExistsOptions = {
+    url: `${OPENHIM_PROTOCOL}://${OPENHIM_CORE_SERVICE_NAME}:${OPENHIM_TRANSACTION_API_PORT}/fhir/Patient?identifier:value=test`,
+    method: 'GET',
+    headers: {
+      'Content-Type': 'application/json',
+      Authorization: `Custom invalid-token`,
+      'Cache-Control': 'no-cache'
+    },
+    validateStatus: (status) => {
+      return status >= 400
+    }
+  }
+  const checkPatientExistsResponse = await axios(checkPatientExistsOptions)
+  expect(checkPatientExistsResponse.status).to.eql(401)
+  this.setTo(checkPatientExistsResponse.data)
+})
+
+Then('Malice is NOT able to get a result', function () {
+  expect(this.searchResults).to.eql('')
+})
+
+AfterAll(async function () {
+  if (hapiFhirPatientID) {
+    console.log(`\nDeleting FHIR test Patient record`)
+    const deletePatientOptions = {
+      url: `${OPENHIM_PROTOCOL}://${OPENHIM_CORE_SERVICE_NAME}:${OPENHIM_TRANSACTION_API_PORT}/fhir/Patient/${hapiFhirPatientID}`,
+      method: 'DELETE',
+      headers: {
+        'Content-Type': 'application/json',
+        Authorization: `Custom ${CUSTOM_TOKEN_ID}`,
+        'Cache-Control': 'no-cache'
+      }
+    }
+
+    const deletePatientResponse = await axios(deletePatientOptions)
+    expect(deletePatientResponse.status).to.eql(200)
+  }
+
+  process.env.NODE_TLS_REJECT_UNAUTHORIZED = 0
+  const checkClientExistsOptions = {
+    url: `https://${OPENHIM_CORE_SERVICE_NAME}:${OPENHIM_MEDIATOR_API_PORT}/clients`,
+    method: 'GET',
+    headers: {
+      'Content-Type': 'application/json',
+      Authorization: BASIC_AUTH_HEADER
+    }
+  }
+
+  const checkClientExistsResponse = await axios(checkClientExistsOptions)
+
+  let clientObjectId
+  // Previous test data should have been cleaned out
+  for (let client of checkClientExistsResponse.data) {
+    if (client.clientID === 'test-harness-client') {
+      clientObjectId = client._id
+      break
+    }
+  }
+
+  if (clientObjectId) {
+    console.log(`\nDeleting OpenHIM test Client record`)
+    const deleteClientOptions = {
+      url: `https://${OPENHIM_CORE_SERVICE_NAME}:${OPENHIM_MEDIATOR_API_PORT}/clients/${clientObjectId}`,
+      method: 'DELETE',
+      headers: {
+        'Content-Type': 'application/json',
+        Authorization: BASIC_AUTH_HEADER
+      }
+    }
+
+    const deleteClientResponse = await axios(deleteClientOptions)
+    expect(deleteClientResponse.status).to.eql(200)
+  }
+})

interoperability-layer-openhim/features/support.js

@@ -0,0 +1,13 @@
+const { setWorldConstructor } = require('@cucumber/cucumber')
+
+class CoreWorld {
+  constructor() {
+    this.searchResults = null
+  }
+
+  setTo(result) {
+    this.searchResults = result
+  }
+}
+
+setWorldConstructor(CoreWorld)

interoperability-layer-openhim/importer/docker-compose.config.yml

@@ -0,0 +1,33 @@
+version: '3.9'
+
+services:
+  # container for executing config import scripts for setting up initial config
+  interoperability-layer-openhim-config-importer:
+    image: node:erbium-alpine
+    environment:
+      OPENHIM_API_USERNAME: 'root@openhim.org'
+      OPENHIM_API_PASSWORD: 'openhim-password'
+      # Reject unauthorised is only needed if the OpenHIM's SSL is not setup
+      NODE_TLS_REJECT_UNAUTHORIZED: 0
+    command: sh -c "node openhimConfig.js"
+    configs:
+      - source: openhim-config-importer-openhimConfig.js
+        target: /openhimConfig.js
+      - source: openhim-config-importer-openhim-import.json
+        target: /openhim-import.json
+    deploy:
+      replicas: 1
+      restart_policy:
+        condition: none
+
+configs:
+  openhim-config-importer-openhimConfig.js:
+    file: ./volume/openhimConfig.js
+    name: openhim-config-importer-openhimConfig.js-${openhim_config_importer_openhimConfig_js_DIGEST:?err}
+    labels:
+      name: openhim
+  openhim-config-importer-openhim-import.json:
+    file: ./volume/openhim-import.json
+    name: openhim-config-importer-openhim-import.json-${openhim_config_importer_openhim_import_js_DIGEST:?err}
+    labels:
+      name: openhim

interoperability-layer-openhim/importer/volume/new/console.json

@@ -0,0 +1,19 @@
+{
+  "version": "1.18.2",
+  "minimumCoreVersion": "5.2.0",
+  "protocol": "https",
+  "host": "localhost",
+  "hostPath": "openhim-api",
+  "port": "",
+  "title": "Admin Console",
+  "footerTitle": "OpenHIM Administration Console",
+  "footerPoweredBy": "<a href='http://openhim.org/' target='_blank'>Powered by OpenHIM</a>",
+  "loginBanner": "",
+  "mediatorLastHeartbeatWarningSeconds": 60,
+  "mediatorLastHeartbeatDangerSeconds": 120,
+  "showLoginForm": true,
+  "ssoEnabled": false,
+  "keyCloakUrl": "http://localhost:9088",
+  "keyCloakRealm": "platform-realm",
+  "keyCloakClientId": "openhim-oauth"
+}

interoperability-layer-openhim/importer/volume/openhim-import-temp.json

@@ -0,0 +1,29 @@
+{
+  "Users": [
+    {
+      "groups": [
+        "admin"
+      ],
+      "firstname": "Super",
+      "surname": "User",
+      "email": "root@openhim.org",
+      "passwordAlgorithm": "sha512",
+      "passwordHash": "{{PASSWORD_HASH}}",
+      "passwordSalt": "{{PASSWORD_SALT}}",
+      "expiry": null,
+      "locked": false,
+      "token": null,
+      "tokenType": null
+    }
+  ],
+  "Clients": [
+    {
+      "roles": [
+        "{{TEST_ROLE}}"
+      ],
+      "customTokenID": "{{OPENHIM_CLIENT_TOKEN}}",
+      "clientID": "{{TEST_CLIENT_ID}}",
+      "name": "{{TEST_CLIENT_NAME}}"
+    }
+  ]
+}

interoperability-layer-openhim/importer/volume/openhim-import.json

@@ -0,0 +1,37 @@
+{
+  "Users": [
+    {
+      "provider": "token",
+      "groups": ["admin"],
+      "firstname": "Super",
+      "surname": "User",
+      "email": "root@openhim.org",
+      "expiry": null,
+      "locked": false,
+      "token": null,
+      "tokenType": null
+    }
+  ],
+  "Passports": [
+    {
+      "protocol": "local",
+      "email": "root@openhim.org",
+      "password": "$2a$10$qvja1lAaItmcZolkoKCPn.9EXY2b8s9dTlUFx36Q7ey0rieXXnxVC"
+    },
+    {
+      "protocol": "token",
+      "email": "root@openhim.org",
+      "passwordHash": "c5e14f0062bfac45bf20f0fcf0403e758a2233756e40e7b328e1f10dfef3d8ba57c2bf230ee9fd627956fbb4e57fab7e32efe108db76d515f1f61f6b853ffba3",
+      "passwordAlgorithm": "sha512",
+      "passwordSalt": "c5f2a9fd7907e1a1c6658841426e6f5d"
+    }
+  ],
+  "Clients": [
+    {
+      "roles": ["instant"],
+      "customTokenID": "test",
+      "clientID": "test",
+      "name": "Test Client"
+    }
+  ]
+}

interoperability-layer-openhim/importer/volume/openhimConfig.js

@@ -0,0 +1,54 @@
+'use strict'
+
+const fs = require('fs')
+const https = require('https')
+const path = require('path')
+
+const OPENHIM_CORE_SERVICE_NAME = 'openhim-core'
+const OPENHIM_MEDIATOR_API_PORT = 8080
+const OPENHIM_API_PASSWORD =
+  process.env.OPENHIM_API_PASSWORD || 'openhim-password'
+const OPENHIM_API_USERNAME =
+  process.env.OPENHIM_API_USERNAME || 'root@openhim.org'
+
+const authHeader = new Buffer.from(
+  `${OPENHIM_API_USERNAME}:${OPENHIM_API_PASSWORD}`
+).toString('base64')
+
+const jsonData = JSON.parse(
+  fs.readFileSync(path.resolve(__dirname, 'openhim-import.json'))
+)
+
+const data = JSON.stringify(jsonData)
+
+const options = {
+  protocol: 'https:',
+  hostname: OPENHIM_CORE_SERVICE_NAME,
+  port: OPENHIM_MEDIATOR_API_PORT,
+  path: '/metadata',
+  method: 'POST',
+  headers: {
+    'Content-Type': 'application/json',
+    'Content-Length': data.length,
+    Authorization: `Basic ${authHeader}`
+  }
+}
+
+const req = https.request(options, res => {
+  if (res.statusCode == 401) {
+    throw new Error(`Incorrect OpenHIM API credentials`)
+  }
+
+  if (res.statusCode != 201) {
+    throw new Error(`Failed to import OpenHIM config: ${res.statusCode}`)
+  }
+
+  console.log('Successfully Imported OpenHIM Config')
+})
+
+req.on('error', error => {
+  console.error('Failed to import OpenHIM config: ', error)
+})
+
+req.write(data)
+req.end()

interoperability-layer-openhim/initiate-replica-set.sh

@@ -0,0 +1,64 @@
+#!/bin/bash
+# - $1 : Stack name that the services are grouped under
+STACK_NAME="${1:-"instant"}"
+
+COMPOSE_FILE_PATH=$(
+    cd "$(dirname "${BASH_SOURCE[0]}")" || exit
+    pwd -P
+)
+
+ROOT_PATH="${COMPOSE_FILE_PATH}/.."
+. "${ROOT_PATH}/utils/config-utils.sh"
+. "${ROOT_PATH}/utils/log.sh"
+
+log info 'Initiating the mongo replica set'
+
+MONGO_SET_COUNT=${MONGO_SET_COUNT:-3}
+config='{"_id":"mongo-set","members":['
+priority="1"
+for i in $(seq 1 "$MONGO_SET_COUNT"); do
+    config=$(printf '%s{"_id":%s,"priority":%s,"host":"mongo-%s:27017"}' "$config" $((i - 1)) $priority "$i")
+    if [[ $i != $MONGO_SET_COUNT ]]; then
+        config=$(printf '%s,' "$config")
+    fi
+    priority="0.5"
+done
+config=$(printf '%s]}' "$config")
+
+log info 'Waiting to ensure all the mongo instances for the replica set are up and running'
+running_instance_count=0
+start_time=$(date +%s)
+until [[ $running_instance_count -eq $MONGO_SET_COUNT ]]; do
+    config::timeout_check "$start_time" "mongo replica set to run"
+    sleep 1
+
+    running_instance_count=0
+    for i in $(docker service ls -f name=${STACK_NAME}_mongo --format "{{.Replicas}}"); do
+        if [[ $i = "1/1" ]]; then
+            running_instance_count=$((running_instance_count + 1))
+        fi
+    done
+done
+
+# Ensures that the replica sets are reachable
+reachable_instance_count=1
+until [[ $reachable_instance_count -eq $((MONGO_SET_COUNT + 1)) ]]; do
+    config::await_service_reachable "mongo-$reachable_instance_count" $STACK_NAME "waiting for connections on port"
+    reachable_instance_count=$((reachable_instance_count + 1))
+done
+
+# TODO (PLAT-256): only works if deploying to node-1 labeled node
+# With docker swarm any manager can be the target but this bit of code only work if we target node-1 specifically.
+# Which is generally what we do, but if node-1 is down or we choose to target another node this won't work.
+container_name=""
+if [[ "$(docker ps -f name=${STACK_NAME}_mongo-1 --format "{{.ID}}")" ]]; then
+    container_name="$(docker ps -f name=${STACK_NAME}_mongo-1 --format "{{.ID}}")"
+fi
+
+initiate_rep_set_response=$(docker exec -i "$container_name" mongo --eval "rs.initiate($config)")
+if [[ $initiate_rep_set_response == *"{ \"ok\" : 1 }"* ]] || [[ $initiate_rep_set_response == *"already initialized"* ]]; then
+    log info "Replica set successfully set up"
+else
+    log error "Fatal: Unable to set up replica set"
+    exit 1
+fi

interoperability-layer-openhim/package-metadata.json

@@ -0,0 +1,37 @@
+{
+  "id": "interoperability-layer-openhim",
+  "name": "Interoperability Layer Package - Openhim",
+  "description": "This is the interoperability layer that enables simpler data exchange between the different systems. It is also the security layer for the other systems",
+  "version": "1.0.0",
+  "type": "infrastructure",
+  "dependencies": [],
+  "environmentVariables": {
+    "MONGO_SET_COUNT": "1",
+    "OPENHIM_CORE_INSTANCES": "1",
+    "OPENHIM_CONSOLE_INSTANCES": "1",
+    "OPENHIM_CORE_MEDIATOR_HOSTNAME": "localhost",
+    "OPENHIM_MEDIATOR_API_PORT": "8080",
+    "OPENHIM_CPU_LIMIT": "0",
+    "OPENHIM_CPU_RESERVE": "0.05",
+    "OPENHIM_MEMORY_LIMIT": "3G",
+    "OPENHIM_MEMORY_RESERVE": "500M",
+    "OPENHIM_CONSOLE_CPU_LIMIT": "0",
+    "OPENHIM_CONSOLE_CPU_RESERVE": "0.05",
+    "OPENHIM_CONSOLE_MEMORY_LIMIT": "2G",
+    "OPENHIM_CONSOLE_MEMORY_RESERVE": "500M",
+    "OPENHIM_MONGO_CPU_LIMIT": "0",
+    "OPENHIM_MONGO_CPU_RESERVE": "0.05",
+    "OPENHIM_MONGO_MEMORY_LIMIT": "2G",
+    "OPENHIM_MONGO_MEMORY_RESERVE": "500M",
+    "OPENHIM_MONGO_URL": "mongodb://mongo-1:27017/openhim",
+    "OPENHIM_MONGO_ATNAURL": "mongodb://mongo-1:27017/openhim",
+    "KAFKA_HOSTS": "kafka-01:9092",
+    "KC_REALM_NAME": "platform-realm",
+    "KC_FRONTEND_URL": "http://localhost:9088",
+    "KC_OPENHIM_SSO_ENABLED": false,
+    "KC_OPENHIM_CLIENT_ID": "openhim-oauth",
+    "KC_OPENHIM_CLIENT_SECRET": "tZKfEbWf0Ka5HBNZwFrdSyQH2xT1sNMR",
+    "KC_OPENHIM_ROOT_URL": "http://localhost:9000",
+    "KC_REALM_FULL_URL": "http://localhost:9088/realms/platform-realm"
+  }
+}

interoperability-layer-openhim/swarm.sh

@@ -0,0 +1,107 @@
+#!/bin/bash
+
+declare ACTION=""
+declare MODE=""
+declare COMPOSE_FILE_PATH=""
+declare UTILS_PATH=""
+declare STACK="openhim"
+
+function init_vars() {
+  ACTION=$1
+  MODE=$2
+
+  COMPOSE_FILE_PATH=$(
+    cd "$(dirname "${BASH_SOURCE[0]}")" || exit
+    pwd -P
+  )
+
+  UTILS_PATH="${COMPOSE_FILE_PATH}/../utils"
+
+  readonly ACTION
+  readonly MODE
+  readonly COMPOSE_FILE_PATH
+  readonly UTILS_PATH
+  readonly STACK
+}
+
+# shellcheck disable=SC1091
+function import_sources() {
+  source "${UTILS_PATH}/docker-utils.sh"
+  source "${UTILS_PATH}/config-utils.sh"
+  source "${UTILS_PATH}/log.sh"
+}
+
+function initialize_package() {
+  local mongo_cluster_compose_filename=""
+  local mongo_dev_compose_filename=""
+  local openhim_dev_compose_filename=""
+
+  if [[ "${MODE}" == "dev" ]]; then
+    log info "Running package in DEV mode"
+    mongo_dev_compose_filename="docker-compose-mongo.dev.yml"
+    openhim_dev_compose_filename="docker-compose.dev.yml"
+  else
+    log info "Running package in PROD mode"
+  fi
+
+  if [[ "${CLUSTERED_MODE}" == "true" ]]; then
+    mongo_cluster_compose_filename="docker-compose-mongo.cluster.yml"
+  fi
+
+  (
+    docker::deploy_service $STACK "${COMPOSE_FILE_PATH}" "docker-compose-mongo.yml" "$mongo_cluster_compose_filename" "$mongo_dev_compose_filename"
+
+    if [[ "${CLUSTERED_MODE}" == "true" ]] && [[ "${ACTION}" == "init" ]]; then
+      try "${COMPOSE_FILE_PATH}/initiate-replica-set.sh $STACK" throw "Fatal: Initiate Mongo replica set failed"
+    fi
+
+    docker::deploy_service $STACK "${COMPOSE_FILE_PATH}" "docker-compose.yml" "$openhim_dev_compose_filename"
+
+    log info "Waiting OpenHIM Core to be running and responding"
+    config::await_service_running "openhim-core" "${COMPOSE_FILE_PATH}"/docker-compose.await-helper.yml "${OPENHIM_CORE_INSTANCES}" "$STACK"
+  ) ||
+    {
+      log error "Failed to deploy package"
+      exit 1
+    }
+
+  if [[ "${ACTION}" == "init" ]]; then
+    docker::deploy_config_importer $STACK "$COMPOSE_FILE_PATH/importer/docker-compose.config.yml" "interoperability-layer-openhim-config-importer" "openhim"
+  fi
+}
+
+function destroy_package() {
+  docker::stack_destroy "$STACK"
+
+  if [[ "${CLUSTERED_MODE}" == "true" ]]; then
+    log warn "Volumes are only deleted on the host on which the command is run. Mongo volumes on other nodes are not deleted"
+  fi
+
+  docker::prune_configs "openhim"
+}
+
+main() {
+  init_vars "$@"
+  import_sources
+
+  if [[ "${ACTION}" == "init" ]] || [[ "${ACTION}" == "up" ]]; then
+    if [[ "${CLUSTERED_MODE}" == "true" ]]; then
+      log info "Running package in Cluster node mode"
+    else
+      log info "Running package in Single node mode"
+    fi
+
+    initialize_package
+  elif [[ "${ACTION}" == "down" ]]; then
+    log info "Scaling down package"
+
+    docker::scale_services "$STACK" 0
+  elif [[ "${ACTION}" == "destroy" ]]; then
+    log info "Destroying package"
+    destroy_package
+  else
+    log error "Valid options are: init, up, down, or destroy"
+  fi
+}
+
+main "$@"

lis-openelis-global/docker-compose-certs.yml

@@ -0,0 +1,19 @@
+version: '3.9'
+
+services:
+  certs:
+    container_name: oe-certs
+    image: ghcr.io/i-tech-uw/certgen:main
+    restart: always
+    environment:
+      - KEYSTORE_PW="kspass"
+      - TRUSTSTORE_PW="tspass"
+    volumes:
+      - cert-volume:/etc/openelis-global
+    networks:
+      - default
+      - openelis
+  networks:
+    openelis:
+      external: true
+      name: openelis

lis-openelis-global/docker-compose-hapi.yml

@@ -0,0 +1,30 @@
+version: '3.9'
+services:
+  fhir.openelis.org:
+    container_name: external-fhir-api
+    image: hapiproject/hapi:v5.5.1
+    restart: always
+    environment:
+      - hapi.fhir.auto_create_placeholder_reference_targets=true
+      - hapi.fhir.allow_placeholder_references=true
+      - hapi.fhir.allow_external_references=true
+    networks:
+      - default
+      - openelis
+
+  fhir.openelis.org.remote:
+    container_name: openelis-remote-source
+    image: hapiproject/hapi:v5.5.1
+    restart: always
+    environment:
+      - hapi.fhir.auto_create_placeholder_reference_targets=true
+      - hapi.fhir.allow_placeholder_references=true
+      - hapi.fhir.allow_external_references=true
+    networks:
+      - default
+      - openelis
+
+networks:
+  openelis:
+    external: true
+    name: openelis

lis-openelis-global/docker-compose-postgres.yml

@@ -0,0 +1,28 @@
+ version: '3.9'
+ services:
+  database:
+    container_name: openelisglobal-database
+    image: postgres:9.5
+    ports:
+      - "15432:5432"
+    restart: always
+    env_file:
+      - ./volume/database/database.env
+    volumes:
+      # preserves the database between containers
+      - db-data:/var/lib/postgresql/data
+        # files here will run on install
+      - ./volume/database/dbInit:/docker-entrypoint-initdb.d
+    networks:
+      - default
+      - openelis
+    healthcheck:
+      test: ["CMD", "pg_isready", "-q", "-d", "clinlims", "-U", "clinlims"]
+      timeout: 45s
+      interval: 10s
+      retries: 10
+
+  networks:
+    openelis:
+      external: true
+      name: openelis

lis-openelis-global/docker-compose.dev.yml

@@ -0,0 +1,8 @@
+version: '3.9'
+
+services:
+  lis-openelis-global:
+    ports:
+      - target: 8080
+        published: 8091
+        mode: host

lis-openelis-global/docker-compose.yml

@@ -0,0 +1,44 @@
+version: '3.9'
+
+services:
+  oe.openelis.org:
+    container_name: openelisglobal-webapp
+    image: ghcr.io/i-tech-uw/openelis-global-2:develop
+    restart: always
+    environment:
+      - TZ=Africa/Nairobi
+        # context.xml doesn't seem to be able to pick up environment variables directly, so we are passing them in as CATALINA_OPTS
+      - CATALINA_OPTS= -Ddatasource.url=jdbc:postgresql://database:5432/clinlims -Ddatasource.username=clinlims -Ddatasource.password=clinlims
+    volumes:
+      - cert-volume:/etc/openelis-global
+      # -  openelis-plugins-data:/var/lib/openelis-global/plugins
+    secrets:
+      - source: datasource.password
+      - source: common.properties
+    networks:
+      - default
+      - openelis
+    configs:
+      - source: oe_server.xml
+        file: ./config/oe_server.xml
+        target: /usr/local/tomcat/conf/server.xml
+        
+  configs:
+    oe_server.xml:
+      file: ./oe_server.xml
+
+  secrets:
+    datasource.password:
+      file: ./config/datasource.password
+    common.properties:
+      file: ./config/common.properties
+  volumes:
+    cert-volume:
+      external: true
+      name: openelis-global-certs
+    openelis-plugins-data:
+  networks:
+    openelis:
+      external: true
+      name: openelis
+    default:

lis-openelis-global/package-metadata.json

@@ -0,0 +1,9 @@
+{
+  "id": "lis-openelis-global",
+  "name": "OpenELIS Global Lab Information System",
+  "description": "An open-source lab information management system designed for global health use.",
+  "type": "infrastructure",
+  "version": "0.0.1",
+  "dependencies": [],
+  "environmentVariables": {}
+}

lis-openelis-global/swarm.sh

@@ -0,0 +1,80 @@
+#!/bin/bash
+
+declare ACTION=""
+declare MODE=""
+declare COMPOSE_FILE_PATH=""
+declare UTILS_PATH=""
+declare SERVICE_NAMES=()
+
+function init_vars() {
+  ACTION=$1
+  MODE=$2
+
+  COMPOSE_FILE_PATH=$(
+    cd "$(dirname "${BASH_SOURCE[0]}")" || exit
+    pwd -P
+  )
+
+  UTILS_PATH="${COMPOSE_FILE_PATH}/../utils"
+
+  SERVICE_NAMES=(
+    "lis-openelis-global"
+  )
+
+  readonly ACTION
+  readonly MODE
+  readonly COMPOSE_FILE_PATH
+  readonly UTILS_PATH
+  readonly SERVICE_NAMES
+}
+
+# shellcheck disable=SC1091
+function import_sources() {
+  source "${UTILS_PATH}/docker-utils.sh"
+  source "${UTILS_PATH}/log.sh"
+}
+
+function initialize_package() {
+  local package_dev_compose_filename=""
+  if [[ "${MODE}" == "dev" ]]; then
+    log info "Running package in DEV mode"
+    package_dev_compose_filename="docker-compose.dev.yml"
+  else
+    log info "Running package in PROD mode"
+  fi
+
+  (
+    docker::deploy_service "${COMPOSE_FILE_PATH}" "$package_dev_compose_filename"
+    docker::deploy_sanity "${SERVICE_NAMES[@]}"
+  ) || {
+    log error "Failed to deploy package"
+    exit 1
+  }
+}
+
+function destroy_package() {
+  docker::service_destroy "${SERVICE_NAMES[@]}"
+}
+
+main() {
+  init_vars "$@"
+  import_sources
+
+  if [[ "${ACTION}" == "init" ]] || [[ "${ACTION}" == "up" ]]; then
+    log info "Running package in Single node mode"
+
+    initialize_package
+  elif [[ "${ACTION}" == "down" ]]; then
+    log info "Scaling down package"
+
+    docker::scale_services_down "${SERVICE_NAMES[@]}"
+  elif [[ "${ACTION}" == "destroy" ]]; then
+    log info "Destroying package"
+
+    destroy_package
+  else
+    log error "Valid options are: init, up, down, or destroy"
+  fi
+}
+
+main "$@"

monitoring/docker-compose.cluster.yml

@@ -0,0 +1,132 @@
+version: '3.9'
+
+services:
+  prometheus:
+    deploy:
+      placement:
+        constraints:
+          - "node.labels.name==node-1"
+      replicas: 1
+
+  prometheus_backup:
+    image: prom/prometheus:v2.38.0
+    user: root
+    deploy:
+      placement:
+        constraints:
+          - "node.labels.name!=node-1"
+      replicas: 1
+    volumes:
+      - prometheus_data_backup:/prometheus
+      - /var/run/docker.sock:/var/run/docker.sock:ro
+    configs:
+      - target: /etc/prometheus/prometheus.yml
+        source: prometheus.yml
+    command:
+      - '--config.file=/etc/prometheus/prometheus.yml'
+      - '--storage.tsdb.path=/prometheus'
+      - '--web.console.libraries=/etc/prometheus/console_libraries'
+      - '--web.console.templates=/etc/prometheus/consoles'
+      - '--web.enable-lifecycle'
+    networks:
+      public:
+      default:
+
+  minio-01:
+    deploy:
+      placement:
+        constraints:
+          - "node.labels.name==node-1"
+
+  minio-02:
+    image: quay.io/minio/minio:RELEASE.2022-10-24T18-35-07Z
+    entrypoint: sh
+    command: -c 'mkdir -p /data1/loki /data2/loki && minio server --console-address ":9001" http://minio-0{1...4}/data{1...2}'
+    environment:
+      MINIO_ROOT_USER: ${MO_SECURITY_ADMIN_USER}
+      MINIO_ROOT_PASSWORD: ${MO_SECURITY_ADMIN_PASSWORD}
+    healthcheck:
+      test:
+        [
+          "CMD",
+          "curl",
+          "-f",
+          "http://localhost:9000/minio/health/live"
+        ]
+      interval: 30s
+      timeout: 20s
+      retries: 3
+    hostname: minio-02
+    volumes:
+      - minio-02-data1:/data1
+      - minio-02-data2:/data2
+    deploy:
+      placement:
+        constraints:
+          - "node.labels.name==node-1"
+      replicas: 1
+
+  minio-03:
+    image: quay.io/minio/minio:RELEASE.2022-10-24T18-35-07Z
+    entrypoint: sh
+    command: -c 'mkdir -p /data1/loki /data2/loki && minio server --console-address ":9001" http://minio-0{1...4}/data{1...2}'
+    environment:
+      MINIO_ROOT_USER: ${MO_SECURITY_ADMIN_USER}
+      MINIO_ROOT_PASSWORD: ${MO_SECURITY_ADMIN_PASSWORD}
+    healthcheck:
+      test:
+        [
+          "CMD",
+          "curl",
+          "-f",
+          "http://localhost:9000/minio/health/live"
+        ]
+      interval: 30s
+      timeout: 20s
+      retries: 3
+    hostname: minio-03
+    volumes:
+      - minio-03-data1:/data1
+      - minio-03-data2:/data2
+    deploy:
+      placement:
+        constraints:
+          - "node.labels.name==node-2"
+      replicas: 1
+
+  minio-04:
+    image: quay.io/minio/minio:RELEASE.2022-10-24T18-35-07Z
+    entrypoint: sh
+    command: -c 'mkdir -p /data1/loki /data2/loki && minio server --console-address ":9001" http://minio-0{1...4}/data{1...2}'
+    environment:
+      MINIO_ROOT_USER: ${MO_SECURITY_ADMIN_USER}
+      MINIO_ROOT_PASSWORD: ${MO_SECURITY_ADMIN_PASSWORD}
+    healthcheck:
+      test:
+        [
+          "CMD",
+          "curl",
+          "-f",
+          "http://localhost:9000/minio/health/live"
+        ]
+      interval: 30s
+      timeout: 20s
+      retries: 3
+    hostname: minio-04
+    volumes:
+      - minio-04-data1:/data1
+      - minio-04-data2:/data2
+    deploy:
+      placement:
+        constraints:
+          - "node.labels.name==node-3"
+      replicas: 1
+
+volumes:
+  prometheus_data_backup:
+  minio-02-data1:
+  minio-02-data2:
+  minio-03-data1:
+  minio-03-data2:
+  minio-04-data1:
+  minio-04-data2:

monitoring/docker-compose.dev.yml

@@ -0,0 +1,26 @@
+version: '3.9'
+
+services:
+  grafana:
+    ports:
+      - target: 3000
+        published: 3000
+        mode: host
+
+  prometheus:
+    ports:
+      - target: 9090
+        published: 9090
+        mode: host
+
+  loki:
+    ports:
+      - target: 3100
+        published: 3100
+        mode: host
+
+  minio-01:
+    ports:
+      - target: 9001
+        published: 9005
+        mode: host

monitoring/docker-compose.yml

@@ -0,0 +1,236 @@
+version: '3.9'
+
+services:
+  grafana:
+    image: grafana/grafana-oss:9.2.3
+    volumes:
+      - grafana-data:/var/lib/grafana
+    environment:
+      GF_SECURITY_ADMIN_USER: ${GF_SECURITY_ADMIN_USER}
+      GF_SECURITY_ADMIN_PASSWORD: ${GF_SECURITY_ADMIN_PASSWORD}
+      GF_USERS_ALLOW_SIGN_UP: "false"
+      GF_SMTP_ENABLED: ${GF_SMTP_ENABLED}
+      GF_SMTP_HOST: ${GF_SMTP_HOST}
+      GF_SMTP_USER: ${GF_SMTP_USER}
+      GF_SMTP_PASSWORD: ${GF_SMTP_PASSWORD}
+      GF_AUTH_BASIC_ENABLED: ${KC_GRAFANA_SSO_ENABLED}
+      GF_AUTH_DISABLE_LOGIN_FORM: ${KC_GRAFANA_SSO_ENABLED}
+      GF_AUTH_GENERIC_OAUTH_TLS_SKIP_VERIFY_INSECURE: "true"
+      GF_AUTH_GENERIC_OAUTH_ENABLED: ${KC_GRAFANA_SSO_ENABLED}
+      GF_AUTH_GENERIC_OAUTH_NAME: "Keycloak"
+      GF_AUTH_GENERIC_OAUTH_ALLOW_SIGN_UP: "true"
+      GF_AUTH_GENERIC_OAUTH_CLIENT_ID: ${KC_GRAFANA_CLIENT_ID}
+      GF_AUTH_GENERIC_OAUTH_CLIENT_SECRET: ${KC_GRAFANA_CLIENT_SECRET}
+      GF_AUTH_GENERIC_OAUTH_EMAIL_ATTRIBUTE_NAME: "email:primary"
+      GF_AUTH_GENERIC_OAUTH_SCOPES: "openid email profile offline_access roles"
+      GF_AUTH_GENERIC_OAUTH_EMAIL_ATTRIBUTE_PATH: "email"
+      GF_AUTH_GENERIC_OAUTH_LOGIN_ATTRIBUTE_PATH: "username"
+      GF_AUTH_GENERIC_OAUTH_NAME_ATTRIBUTE_PATH: "full_name"
+      GF_AUTH_GENERIC_OAUTH_AUTH_URL: "${KC_FRONTEND_URL}/realms/${KC_REALM_NAME}/protocol/openid-connect/auth"
+      GF_AUTH_GENERIC_OAUTH_TOKEN_URL: "${KC_API_URL}/realms/${KC_REALM_NAME}/protocol/openid-connect/token"
+      GF_AUTH_GENERIC_OAUTH_API_URL: "${KC_API_URL}/realms/${KC_REALM_NAME}/protocol/openid-connect/userinfo"
+      GF_AUTH_GENERIC_OAUTH_ROLE_ATTRIBUTE_PATH: "contains(roles[*], 'admin') && 'Admin' || contains(roles[*], 'editor') && 'Editor' || 'Viewer'"
+      GF_SERVER_DOMAIN: ${GF_SERVER_DOMAIN}
+      GF_SERVER_ROOT_URL: ${KC_GRAFANA_ROOT_URL}
+      GF_AUTH_SIGNOUT_REDIRECT_URL: "${KC_FRONTEND_URL}/realms/${KC_REALM_NAME}/protocol/openid-connect/logout?client_id=${KC_GRAFANA_CLIENT_ID}&post_logout_redirect_uri=${KC_GRAFANA_ROOT_URL}/login"
+    configs:
+      - target: /etc/grafana/grafana.ini
+        source: grafana.ini
+      - target: /etc/grafana/provisioning/datasources/datasource.yml
+        source: datasource.yml
+      - target: /etc/grafana/provisioning/dashboards/dashboard.yml
+        source: dashboard.yml
+      - target: /etc/grafana/provisioning/dashboards/nodes/node-exporter-full_rev27.json
+        source: node-exporter-full_rev27.json
+      - target: /etc/grafana/provisioning/dashboards/containers/docker-swarm-monitor-v2_rev2.json
+        source: docker-swarm-monitor-v2_rev2.json
+      - target: /etc/grafana/provisioning/dashboards/applications/kminion-cluster_rev1.json
+        source: kminion-cluster_rev1.json
+      - target: /etc/grafana/provisioning/dashboards/applications/kminion-groups_rev1.json
+        source: kminion-groups_rev1.json
+      - target: /etc/grafana/provisioning/dashboards/applications/kminion-topic_rev1.json
+        source: kminion-topic_rev1.json
+      - target: /etc/grafana/provisioning/dashboards/containers/logging-universal-dashboard_rev1.json
+        source: logging-universal-dashboard_rev1.json
+    networks:
+      keycloak:
+      reverse-proxy:
+      default:
+
+  prometheus:
+    image: prom/prometheus:v2.38.0
+    user: root
+    volumes:
+      - prometheus-data:/prometheus
+      - /var/run/docker.sock:/var/run/docker.sock:ro
+    configs:
+      - target: /etc/prometheus/prometheus.yml
+        source: prometheus.yml
+    command:
+      - '--config.file=/etc/prometheus/prometheus.yml'
+      - '--storage.tsdb.path=/prometheus'
+      - '--web.console.libraries=/etc/prometheus/console_libraries'
+      - '--web.console.templates=/etc/prometheus/consoles'
+      - '--web.enable-lifecycle'
+    networks:
+      public:
+      default:
+
+  cadvisor:
+    image: gcr.io/cadvisor/cadvisor:v0.45.0
+    command: -docker_only
+    volumes:
+      - /:/rootfs:ro
+      - /var/run:/var/run
+      - /sys:/sys:ro
+      - /var/lib/docker/:/var/lib/docker
+      - /dev/disk/:/dev/disk:ro
+    deploy:
+      mode: global
+
+  node-exporter:
+    image: quay.io/prometheus/node-exporter:v1.3.1
+    hostname: "{{.Node.ID}}"
+    command:
+      - '--path.rootfs=/host'
+    volumes:
+      - '/:/host:ro,rslave'
+    deploy:
+      mode: global
+
+  loki:
+    image: grafana/loki:2.6.1
+    volumes:
+      - loki-data:/tmp/loki
+    environment:
+      MO_SECURITY_ADMIN_USER: ${MO_SECURITY_ADMIN_USER}
+      MO_SECURITY_ADMIN_PASSWORD: ${MO_SECURITY_ADMIN_PASSWORD}
+    configs:
+      - target: /etc/loki/loki-config.yml
+        source: loki-config.yml
+    command: -config.file=/etc/loki/loki-config.yml -config.expand-env=true
+    deploy:
+      labels:
+        - prometheus-job-service=loki
+        - prometheus-address=loki:3100
+
+  promtail:
+    image: grafana/promtail:2.6.1
+    volumes:
+      - /var/lib/docker/containers:/host/containers
+      - /var/log:/var/log:ro
+    configs:
+      - target: /etc/promtail/promtail-config.yml
+        source: promtail-config.yml
+    command: -config.file=/etc/promtail/promtail-config.yml
+    deploy:
+      mode: global
+
+  minio-01:
+    image: quay.io/minio/minio:RELEASE.2022-10-24T18-35-07Z
+    entrypoint: sh
+    command: -c 'mkdir -p /data1/loki /data2/loki && minio server --console-address ":9001" http://minio-0{1...${NUM_MINIO_SERVERS}}/data{1...2}'
+    environment:
+      MINIO_ROOT_USER: ${MO_SECURITY_ADMIN_USER}
+      MINIO_ROOT_PASSWORD: ${MO_SECURITY_ADMIN_PASSWORD}
+    healthcheck:
+      test:
+        [
+          "CMD",
+          "curl",
+          "-f",
+          "http://localhost:9000/minio/health/live"
+        ]
+      interval: 30s
+      timeout: 20s
+      retries: 3
+    hostname: minio-01
+    volumes:
+      - minio-01-data1:/data1
+      - minio-01-data2:/data2
+    deploy:
+      replicas: 1
+    networks:
+      reverse-proxy:
+      default:
+
+configs:
+  grafana.ini:
+    file: ./grafana/grafana.ini
+    name: grafana.ini-${grafana_ini_DIGEST:?err}
+    labels:
+      name: grafana
+  datasource.yml:
+    file: ./grafana/datasource.yml
+    name: datasource.yml-${datasource_yml_DIGEST:?err}
+    labels:
+      name: grafana
+  dashboard.yml:
+    file: ./grafana/dashboards/dashboard.yml
+    name: dashboard.yml-${dashboard_yml_DIGEST:?err}
+    labels:
+      name: grafana
+  node-exporter-full_rev27.json:
+    file: ./grafana/dashboards/nodes/node-exporter-full_rev27.json
+    name: node-exporter-full_rev27.json-${node_exporter_full_rev27_json_DIGEST:?err}
+    labels:
+      name: grafana
+  docker-swarm-monitor-v2_rev2.json:
+    file: ./grafana/dashboards/containers/docker-swarm-monitor-v2_rev2.json
+    name: docker-swarm-monitor-v2_rev2.json-${docker_swarm_monitor_v2_rev2_json_DIGEST:?err}
+    labels:
+      name: grafana
+  kminion-cluster_rev1.json:
+    file: ./grafana/dashboards/applications/kminion-cluster_rev1.json
+    name: kminion-cluster_rev1.json-${kminion_cluster_rev1_json_DIGEST:?err}
+    labels:
+      name: grafana
+  kminion-groups_rev1.json:
+    file: ./grafana/dashboards/applications/kminion-groups_rev1.json
+    name: kminion-groups_rev1.json-${kminion_groups_rev1_json_DIGEST:?err}
+    labels:
+      name: grafana
+  kminion-topic_rev1.json:
+    file: ./grafana/dashboards/applications/kminion-topic_rev1.json
+    name: kminion-topic_rev1.json-${kminion_topic_rev1_json_DIGEST:?err}
+    labels:
+      name: grafana
+  logging-universal-dashboard_rev1.json:
+    file: ./grafana/dashboards/containers/logging-universal-dashboard_rev1.json
+    name: logging-universal-dashboard_rev1.json-${logging_universal_dashboard_rev1_json_DIGEST:?err}
+    labels:
+      name: grafana
+  prometheus.yml:
+    file: ./prometheus/prometheus.yml
+    name: prometheus.yml-${prometheus_yml_DIGEST:?err}
+    labels:
+      name: prometheus
+  loki-config.yml:
+    file: ./loki/loki-config.yml
+    name: loki-config.yml-${loki_config_yml_DIGEST:?err}
+    labels:
+      name: loki
+  promtail-config.yml:
+    file: ./promtail/promtail-config.yml
+    name: promtail-config.yml-${promtail_config_yml_DIGEST:?err}
+    labels:
+      name: promtail
+
+volumes:
+  prometheus-data:
+  grafana-data:
+  loki-data:
+  minio-01-data1:
+  minio-01-data2:
+
+networks:
+  keycloak:
+    name: keycloak_public
+    external: true
+  reverse-proxy:
+    name: reverse-proxy_public
+    external: true
+  public:
+    name: prometheus_public
+    external: true
+  default:

monitoring/grafana/dashboards/applications/kminion-cluster_rev1.json

@@ -0,0 +1,914 @@
+{
+  "__inputs": [
+    {
+      "name": "DS_CORTEX",
+      "label": "Prometheus",
+      "description": "Prometheus Server",
+      "type": "datasource",
+      "pluginId": "prometheus",
+      "pluginName": "Prometheus"
+    }
+  ],
+  "__requires": [
+    {
+      "type": "grafana",
+      "id": "grafana",
+      "name": "Grafana",
+      "version": "7.3.6"
+    },
+    {
+      "type": "panel",
+      "id": "graph",
+      "name": "Graph",
+      "version": ""
+    },
+    {
+      "type": "datasource",
+      "id": "prometheus",
+      "name": "Prometheus",
+      "version": "1.0.0"
+    },
+    {
+      "type": "panel",
+      "id": "singlestat",
+      "name": "Singlestat",
+      "version": ""
+    },
+    {
+      "type": "panel",
+      "id": "table",
+      "name": "Table",
+      "version": ""
+    }
+  ],
+  "annotations": {
+    "list": [
+      {
+        "builtIn": 1,
+        "datasource": "-- Grafana --",
+        "enable": true,
+        "hide": true,
+        "iconColor": "rgba(0, 211, 255, 1)",
+        "name": "Annotations & Alerts",
+        "type": "dashboard"
+      }
+    ]
+  },
+  "description": "Cluster wide metrics exported by KMinion",
+  "editable": true,
+  "gnetId": 14012,
+  "graphTooltip": 0,
+  "id": null,
+  "iteration": 1614981106152,
+  "links": [],
+  "panels": [
+    {
+      "aliasColors": {},
+      "bars": false,
+      "dashLength": 10,
+      "dashes": false,
+      "datasource": "Prometheus",
+      "description": "Summed delta between High and Low watermark of all partitions in the given topic. Therefore not accurate for compacted topics that contain compacted records.",
+      "fieldConfig": {
+        "defaults": {
+          "custom": {}
+        },
+        "overrides": []
+      },
+      "fill": 1,
+      "fillGradient": 0,
+      "gridPos": {
+        "h": 8,
+        "w": 8,
+        "x": 0,
+        "y": 0
+      },
+      "hiddenSeries": false,
+      "id": 16,
+      "legend": {
+        "avg": false,
+        "current": false,
+        "max": false,
+        "min": false,
+        "show": false,
+        "total": false,
+        "values": false
+      },
+      "lines": true,
+      "linewidth": 2,
+      "nullPointMode": "null",
+      "options": {
+        "alertThreshold": true
+      },
+      "percentage": false,
+      "pluginVersion": "7.3.6",
+      "pointradius": 2,
+      "points": false,
+      "renderer": "flot",
+      "seriesOverrides": [],
+      "spaceLength": 10,
+      "stack": false,
+      "steppedLine": false,
+      "targets": [
+        {
+          "expr": "sum by (kubernetes_pod_name) (rate(kminion_kafka_topic_high_water_mark_sum[$__rate_interval]))",
+          "interval": "",
+          "legendFormat": "",
+          "refId": "A"
+        }
+      ],
+      "thresholds": [],
+      "timeFrom": null,
+      "timeRegions": [],
+      "timeShift": null,
+      "title": "Messages in/sec",
+      "tooltip": {
+        "shared": true,
+        "sort": 0,
+        "value_type": "individual"
+      },
+      "type": "graph",
+      "xaxis": {
+        "buckets": null,
+        "mode": "time",
+        "name": null,
+        "show": true,
+        "values": []
+      },
+      "yaxes": [
+        {
+          "$$hashKey": "object:545",
+          "decimals": 0,
+          "format": "short",
+          "label": null,
+          "logBase": 1,
+          "max": null,
+          "min": "0",
+          "show": true
+        },
+        {
+          "$$hashKey": "object:546",
+          "format": "short",
+          "label": null,
+          "logBase": 1,
+          "max": null,
+          "min": null,
+          "show": true
+        }
+      ],
+      "yaxis": {
+        "align": false,
+        "alignLevel": null
+      }
+    },
+    {
+      "cacheTimeout": null,
+      "colorBackground": false,
+      "colorValue": false,
+      "colors": [
+        "#299c46",
+        "rgba(237, 129, 40, 0.89)",
+        "#d44a3a"
+      ],
+      "datasource": "Prometheus",
+      "fieldConfig": {
+        "defaults": {
+          "custom": {}
+        },
+        "overrides": []
+      },
+      "format": "none",
+      "gauge": {
+        "maxValue": 100,
+        "minValue": 0,
+        "show": false,
+        "thresholdLabels": false,
+        "thresholdMarkers": true
+      },
+      "gridPos": {
+        "h": 4,
+        "w": 4,
+        "x": 8,
+        "y": 0
+      },
+      "id": 11,
+      "interval": null,
+      "links": [],
+      "mappingType": 1,
+      "mappingTypes": [
+        {
+          "$$hashKey": "object:221",
+          "name": "value to text",
+          "value": 1
+        },
+        {
+          "$$hashKey": "object:222",
+          "name": "range to text",
+          "value": 2
+        }
+      ],
+      "maxDataPoints": 100,
+      "nullPointMode": "connected",
+      "nullText": null,
+      "postfix": "",
+      "postfixFontSize": "50%",
+      "prefix": "",
+      "prefixFontSize": "50%",
+      "rangeMaps": [
+        {
+          "from": "null",
+          "text": "N/A",
+          "to": "null"
+        }
+      ],
+      "sparkline": {
+        "fillColor": "rgba(31, 118, 189, 0.18)",
+        "full": false,
+        "lineColor": "rgb(31, 120, 193)",
+        "show": false
+      },
+      "tableColumn": "cluster_version",
+      "targets": [
+        {
+          "expr": "kminion_kafka_cluster_info",
+          "format": "table",
+          "instant": true,
+          "interval": "",
+          "intervalFactor": 1,
+          "legendFormat": "",
+          "refId": "A"
+        }
+      ],
+      "thresholds": "",
+      "timeFrom": null,
+      "timeShift": null,
+      "title": "Cluster Version",
+      "type": "singlestat",
+      "valueFontSize": "80%",
+      "valueMaps": [
+        {
+          "$$hashKey": "object:224",
+          "op": "=",
+          "text": "N/A",
+          "value": "null"
+        }
+      ],
+      "valueName": "current"
+    },
+    {
+      "datasource": "Prometheus",
+      "fieldConfig": {
+        "defaults": {
+          "custom": {
+            "align": null,
+            "filterable": false
+          },
+          "mappings": [],
+          "thresholds": {
+            "mode": "absolute",
+            "steps": [
+              {
+                "color": "green",
+                "value": null
+              },
+              {
+                "color": "red",
+                "value": 80
+              }
+            ]
+          }
+        },
+        "overrides": []
+      },
+      "gridPos": {
+        "h": 8,
+        "w": 12,
+        "x": 12,
+        "y": 0
+      },
+      "id": 10,
+      "options": {
+        "showHeader": true,
+        "sortBy": [
+          {
+            "desc": false,
+            "displayName": "Address"
+          }
+        ]
+      },
+      "pluginVersion": "7.3.6",
+      "targets": [
+        {
+          "expr": "kminion_kafka_broker_info",
+          "format": "table",
+          "instant": true,
+          "interval": "",
+          "legendFormat": "",
+          "refId": "A"
+        }
+      ],
+      "timeFrom": null,
+      "timeShift": null,
+      "title": "Brokers",
+      "transformations": [
+        {
+          "id": "organize",
+          "options": {
+            "excludeByName": {
+              "Time": true,
+              "Value": true,
+              "__cluster__": true,
+              "__name__": true,
+              "instance": true,
+              "job": true,
+              "kubernetes_namespace": true,
+              "kubernetes_pod_name": true
+            },
+            "indexByName": {
+              "Time": 0,
+              "Value": 12,
+              "__cluster__": 1,
+              "__name__": 2,
+              "address": 4,
+              "broker_id": 3,
+              "instance": 6,
+              "is_controller": 8,
+              "job": 9,
+              "kubernetes_namespace": 10,
+              "kubernetes_pod_name": 11,
+              "port": 5,
+              "rack_id": 7
+            },
+            "renameByName": {
+              "address": "Address",
+              "broker_id": "BrokerID",
+              "instance": "",
+              "is_controller": "Is Controller",
+              "port": "Port",
+              "rack_id": "RackID"
+            }
+          }
+        }
+      ],
+      "type": "table"
+    },
+    {
+      "cacheTimeout": null,
+      "colorBackground": false,
+      "colorValue": false,
+      "colors": [
+        "#299c46",
+        "rgba(237, 129, 40, 0.89)",
+        "#d44a3a"
+      ],
+      "datasource": "Prometheus",
+      "fieldConfig": {
+        "defaults": {
+          "custom": {}
+        },
+        "overrides": []
+      },
+      "format": "none",
+      "gauge": {
+        "maxValue": 100,
+        "minValue": 0,
+        "show": false,
+        "thresholdLabels": false,
+        "thresholdMarkers": true
+      },
+      "gridPos": {
+        "h": 4,
+        "w": 4,
+        "x": 8,
+        "y": 4
+      },
+      "id": 7,
+      "interval": null,
+      "links": [],
+      "mappingType": 1,
+      "mappingTypes": [
+        {
+          "$$hashKey": "object:221",
+          "name": "value to text",
+          "value": 1
+        },
+        {
+          "$$hashKey": "object:222",
+          "name": "range to text",
+          "value": 2
+        }
+      ],
+      "maxDataPoints": 100,
+      "nullPointMode": "connected",
+      "nullText": null,
+      "postfix": "",
+      "postfixFontSize": "50%",
+      "prefix": "",
+      "prefixFontSize": "50%",
+      "rangeMaps": [
+        {
+          "from": "null",
+          "text": "N/A",
+          "to": "null"
+        }
+      ],
+      "sparkline": {
+        "fillColor": "rgba(31, 118, 189, 0.18)",
+        "full": false,
+        "lineColor": "rgb(31, 120, 193)",
+        "show": false
+      },
+      "tableColumn": "broker_count",
+      "targets": [
+        {
+          "expr": "kminion_kafka_cluster_info",
+          "format": "table",
+          "instant": true,
+          "interval": "",
+          "intervalFactor": 1,
+          "legendFormat": "",
+          "refId": "A"
+        }
+      ],
+      "thresholds": "",
+      "timeFrom": null,
+      "timeShift": null,
+      "title": "Brokers Online",
+      "type": "singlestat",
+      "valueFontSize": "80%",
+      "valueMaps": [
+        {
+          "$$hashKey": "object:224",
+          "op": "=",
+          "text": "N/A",
+          "value": "null"
+        }
+      ],
+      "valueName": "current"
+    },
+    {
+      "aliasColors": {},
+      "bars": false,
+      "dashLength": 10,
+      "dashes": false,
+      "datasource": "Prometheus",
+      "description": "Log dir size across all log dirs, topics and partitions for a given broker.",
+      "fieldConfig": {
+        "defaults": {
+          "custom": {}
+        },
+        "overrides": []
+      },
+      "fill": 1,
+      "fillGradient": 0,
+      "gridPos": {
+        "h": 8,
+        "w": 8,
+        "x": 0,
+        "y": 8
+      },
+      "hiddenSeries": false,
+      "id": 14,
+      "legend": {
+        "avg": false,
+        "current": false,
+        "max": false,
+        "min": false,
+        "show": false,
+        "total": false,
+        "values": false
+      },
+      "lines": true,
+      "linewidth": 2,
+      "nullPointMode": "null",
+      "options": {
+        "alertThreshold": true
+      },
+      "percentage": false,
+      "pluginVersion": "7.3.6",
+      "pointradius": 2,
+      "points": false,
+      "renderer": "flot",
+      "seriesOverrides": [],
+      "spaceLength": 10,
+      "stack": false,
+      "steppedLine": false,
+      "targets": [
+        {
+          "expr": "avg by (broker_id) (kminion_kafka_broker_log_dir_size_total_bytes)",
+          "interval": "",
+          "legendFormat": "Broker {{broker_id}}",
+          "refId": "A"
+        }
+      ],
+      "thresholds": [],
+      "timeFrom": null,
+      "timeRegions": [],
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monitoring/grafana/dashboards/applications/kminion-topic_rev1.json

@@ -0,0 +1,878 @@
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+      "options": {
+        "showHeader": true,
+        "sortBy": []
+      },
+      "pluginVersion": "7.3.6",
+      "targets": [
+        {
+          "expr": "avg by (partition_id) (kminion_kafka_topic_partition_low_water_mark{topic_name=\"$topic\"})",
+          "format": "table",
+          "instant": true,
+          "interval": "",
+          "legendFormat": "",
+          "refId": "A"
+        },
+        {
+          "expr": "avg by (partition_id) (kminion_kafka_topic_partition_high_water_mark{topic_name=\"$topic\"})",
+          "format": "table",
+          "instant": true,
+          "interval": "",
+          "legendFormat": "",
+          "refId": "B"
+        }
+      ],
+      "timeFrom": null,
+      "timeShift": null,
+      "title": "Partitions",
+      "transformations": [
+        {
+          "id": "seriesToColumns",
+          "options": {
+            "byField": "partition_id"
+          }
+        },
+        {
+          "id": "organize",
+          "options": {
+            "excludeByName": {
+              "Time 1": true,
+              "Time 2": true
+            },
+            "indexByName": {},
+            "renameByName": {
+              "Time 1": "",
+              "Time 2": "",
+              "Value #A": "Low Water Mark",
+              "Value #B": "High Water Mark",
+              "partition_id": "Partition ID"
+            }
+          }
+        },
+        {
+          "id": "calculateField",
+          "options": {
+            "alias": "Message Count",
+            "mode": "reduceRow",
+            "reduce": {
+              "include": [
+                "High Water Mark",
+                "Low Water Mark"
+              ],
+              "reducer": "delta"
+            }
+          }
+        }
+      ],
+      "type": "table"
+    }
+  ],
+  "refresh": "30s",
+  "schemaVersion": 26,
+  "style": "dark",
+  "tags": [],
+  "templating": {
+    "list": [
+      {
+        "allValue": null,
+        "current": {},
+        "datasource": "Prometheus",
+        "definition": "label_values(kminion_kafka_topic_low_water_mark_sum, topic_name)",
+        "error": null,
+        "hide": 0,
+        "includeAll": false,
+        "label": "Topic",
+        "multi": false,
+        "name": "topic",
+        "options": [],
+        "query": "label_values(kminion_kafka_topic_low_water_mark_sum, topic_name)",
+        "refresh": 1,
+        "regex": "",
+        "skipUrlSync": false,
+        "sort": 1,
+        "tagValuesQuery": "",
+        "tags": [],
+        "tagsQuery": "",
+        "type": "query",
+        "useTags": false
+      }
+    ]
+  },
+  "time": {
+    "from": "now-6h",
+    "to": "now"
+  },
+  "timepicker": {},
+  "timezone": "",
+  "title": "KMinion Topic Dashboard - Prometheus Exporter for Apache Kafka",
+  "uid": "kS6iVtyMk",
+  "version": 19,
+  "description": "Kafka Topic metrics exported by KMinion"
+}

monitoring/grafana/dashboards/containers/docker-swarm-monitor-v2_rev2.json

@@ -0,0 +1,688 @@
+{
+  "annotations": {
+    "list": [
+      {
+        "builtIn": 1,
+        "datasource": {
+          "type": "grafana",
+          "uid": "-- Grafana --"
+        },
+        "enable": true,
+        "hide": true,
+        "iconColor": "rgba(0, 211, 255, 1)",
+        "name": "Annotations & Alerts",
+        "target": {
+          "limit": 100,
+          "matchAny": false,
+          "tags": [],
+          "type": "dashboard"
+        },
+        "type": "dashboard"
+      }
+    ]
+  },
+  "description": "Docker Swarm Monitor Dashboad v2.0",
+  "editable": true,
+  "fiscalYearStartMonth": 0,
+  "gnetId": 1505,
+  "graphTooltip": 0,
+  "links": [
+    {
+      "asDropdown": true,
+      "icon": "external link",
+      "tags": [
+        "prometheus",
+        "cAdvisor",
+        "node-exporter",
+        "alertmanager"
+      ],
+      "type": "dashboards"
+    }
+  ],
+  "liveNow": false,
+  "panels": [
+    {
+      "aliasColors": {},
+      "bars": false,
+      "dashLength": 10,
+      "dashes": false,
+      "datasource": {
+        "type": "prometheus",
+        "uid": "PBFA97CFB590B2093"
+      },
+      "fill": 5,
+      "fillGradient": 0,
+      "gridPos": {
+        "h": 8,
+        "w": 24,
+        "x": 0,
+        "y": 0
+      },
+      "height": "270px",
+      "hiddenSeries": false,
+      "id": 1,
+      "legend": {
+        "alignAsTable": true,
+        "avg": false,
+        "current": true,
+        "hideEmpty": false,
+        "hideZero": true,
+        "max": true,
+        "min": true,
+        "rightSide": true,
+        "show": true,
+        "total": false,
+        "values": true
+      },
+      "lines": true,
+      "linewidth": 1,
+      "links": [],
+      "nullPointMode": "null as zero",
+      "options": {
+        "alertThreshold": true
+      },
+      "percentage": false,
+      "pluginVersion": "9.1.0",
+      "pointradius": 5,
+      "points": false,
+      "renderer": "flot",
+      "seriesOverrides": [],
+      "spaceLength": 10,
+      "stack": true,
+      "steppedLine": false,
+      "targets": [
+        {
+          "datasource": {
+            "type": "prometheus",
+            "uid": "PBFA97CFB590B2093"
+          },
+          "editorMode": "code",
+          "expr": "sum by(name) (rate(container_cpu_usage_seconds_total{name=~\".+\", container_label_com_docker_swarm_node_id=~\"$node\"}[$interval])) * 100",
+          "intervalFactor": 2,
+          "legendFormat": "{{name}}",
+          "range": true,
+          "refId": "A",
+          "step": 2
+        }
+      ],
+      "thresholds": [],
+      "timeRegions": [],
+      "title": "CPU Usage per Container",
+      "tooltip": {
+        "shared": true,
+        "sort": 0,
+        "value_type": "individual"
+      },
+      "type": "graph",
+      "xaxis": {
+        "mode": "time",
+        "show": true,
+        "values": []
+      },
+      "yaxes": [
+        {
+          "format": "percent",
+          "logBase": 1,
+          "show": true
+        },
+        {
+          "format": "short",
+          "logBase": 1,
+          "show": false
+        }
+      ],
+      "yaxis": {
+        "align": false
+      }
+    },
+    {
+      "alert": {
+        "conditions": [
+          {
+            "evaluator": {
+              "params": [
+                1000000000
+              ],
+              "type": "gt"
+            },
+            "operator": {
+              "type": "and"
+            },
+            "query": {
+              "datasourceId": 1,
+              "model": {
+                "expr": "sum(container_memory_rss{name=~\".+\"}) by (name)",
+                "hide": false,
+                "intervalFactor": 2,
+                "legendFormat": "{{name}}",
+                "metric": "container_memory_rss",
+                "refId": "A",
+                "step": 2
+              },
+              "params": [
+                "A",
+                "5m",
+                "now"
+              ]
+            },
+            "reducer": {
+              "params": [],
+              "type": "avg"
+            },
+            "type": "query"
+          }
+        ],
+        "executionErrorState": "alerting",
+        "frequency": "60s",
+        "handler": 1,
+        "name": "Memory Usage per Container alert",
+        "noDataState": "keep_state",
+        "notifications": []
+      },
+      "aliasColors": {},
+      "bars": false,
+      "dashLength": 10,
+      "dashes": false,
+      "datasource": {
+        "type": "prometheus",
+        "uid": "PBFA97CFB590B2093"
+      },
+      "fill": 3,
+      "fillGradient": 0,
+      "gridPos": {
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+        "w": 24,
+        "x": 0,
+        "y": 8
+      },
+      "height": "270px",
+      "hiddenSeries": false,
+      "id": 5,
+      "legend": {
+        "alignAsTable": true,
+        "avg": false,
+        "current": true,
+        "hideZero": true,
+        "max": true,
+        "min": true,
+        "rightSide": true,
+        "show": true,
+        "sort": "current",
+        "sortDesc": true,
+        "total": false,
+        "values": true
+      },
+      "lines": true,
+      "linewidth": 2,
+      "links": [],
+      "nullPointMode": "null as zero",
+      "options": {
+        "alertThreshold": true
+      },
+      "percentage": false,
+      "pluginVersion": "9.1.0",
+      "pointradius": 5,
+      "points": false,
+      "renderer": "flot",
+      "seriesOverrides": [],
+      "spaceLength": 10,
+      "stack": true,
+      "steppedLine": false,
+      "targets": [
+        {
+          "datasource": {
+            "type": "prometheus",
+            "uid": "PBFA97CFB590B2093"
+          },
+          "editorMode": "code",
+          "expr": "sum by(name) (container_memory_rss{name=~\".+\", container_label_com_docker_swarm_node_id=~\"$node\"})",
+          "hide": false,
+          "intervalFactor": 2,
+          "legendFormat": "{{name}}",
+          "metric": "container_memory_rss",
+          "range": true,
+          "refId": "A",
+          "step": 2
+        }
+      ],
+      "thresholds": [
+        {
+          "colorMode": "critical",
+          "fill": true,
+          "line": true,
+          "op": "gt",
+          "value": 1000000000
+        }
+      ],
+      "timeRegions": [],
+      "title": "Memory Usage per Container",
+      "tooltip": {
+        "shared": true,
+        "sort": 0,
+        "value_type": "individual"
+      },
+      "type": "graph",
+      "xaxis": {
+        "mode": "time",
+        "show": true,
+        "values": []
+      },
+      "yaxes": [
+        {
+          "format": "bytes",
+          "logBase": 1,
+          "show": true
+        },
+        {
+          "format": "short",
+          "logBase": 1,
+          "show": true
+        }
+      ],
+      "yaxis": {
+        "align": false
+      }
+    },
+    {
+      "aliasColors": {},
+      "bars": false,
+      "dashLength": 10,
+      "dashes": false,
+      "datasource": {
+        "type": "prometheus",
+        "uid": "PBFA97CFB590B2093"
+      },
+      "fill": 1,
+      "fillGradient": 0,
+      "gridPos": {
+        "h": 8,
+        "w": 24,
+        "x": 0,
+        "y": 16
+      },
+      "height": "270px",
+      "hiddenSeries": false,
+      "id": 6,
+      "legend": {
+        "alignAsTable": true,
+        "avg": false,
+        "current": true,
+        "hideEmpty": false,
+        "hideZero": true,
+        "max": true,
+        "min": true,
+        "rightSide": true,
+        "show": true,
+        "total": false,
+        "values": true
+      },
+      "lines": true,
+      "linewidth": 2,
+      "links": [],
+      "nullPointMode": "null as zero",
+      "options": {
+        "alertThreshold": true
+      },
+      "percentage": false,
+      "pluginVersion": "9.1.0",
+      "pointradius": 5,
+      "points": false,
+      "renderer": "flot",
+      "seriesOverrides": [],
+      "spaceLength": 10,
+      "stack": false,
+      "steppedLine": false,
+      "targets": [
+        {
+          "datasource": {
+            "type": "prometheus",
+            "uid": "PBFA97CFB590B2093"
+          },
+          "editorMode": "code",
+          "expr": "sum(rate(container_network_receive_bytes_total{name=~\".+\", container_label_com_docker_swarm_node_id=~\"$node\"}[$interval])) by (name)",
+          "intervalFactor": 2,
+          "legendFormat": "{{name}}",
+          "range": true,
+          "refId": "A",
+          "step": 2
+        }
+      ],
+      "thresholds": [],
+      "timeRegions": [],
+      "title": "Incoming Network Traffic per Container",
+      "tooltip": {
+        "shared": true,
+        "sort": 0,
+        "value_type": "individual"
+      },
+      "type": "graph",
+      "xaxis": {
+        "mode": "time",
+        "show": true,
+        "values": []
+      },
+      "yaxes": [
+        {
+          "format": "Bps",
+          "logBase": 1,
+          "show": true
+        },
+        {
+          "format": "short",
+          "logBase": 1,
+          "show": true
+        }
+      ],
+      "yaxis": {
+        "align": false
+      }
+    },
+    {
+      "aliasColors": {},
+      "bars": false,
+      "dashLength": 10,
+      "dashes": false,
+      "datasource": {
+        "type": "prometheus",
+        "uid": "PBFA97CFB590B2093"
+      },
+      "fill": 1,
+      "fillGradient": 0,
+      "gridPos": {
+        "h": 8,
+        "w": 24,
+        "x": 0,
+        "y": 24
+      },
+      "height": "270px",
+      "hiddenSeries": false,
+      "id": 8,
+      "legend": {
+        "alignAsTable": true,
+        "avg": false,
+        "current": true,
+        "hideEmpty": false,
+        "hideZero": true,
+        "max": true,
+        "min": true,
+        "rightSide": true,
+        "show": true,
+        "total": false,
+        "values": true
+      },
+      "lines": true,
+      "linewidth": 1,
+      "links": [],
+      "nullPointMode": "null",
+      "options": {
+        "alertThreshold": true
+      },
+      "percentage": false,
+      "pluginVersion": "9.1.0",
+      "pointradius": 5,
+      "points": false,
+      "renderer": "flot",
+      "seriesOverrides": [],
+      "spaceLength": 10,
+      "stack": false,
+      "steppedLine": false,
+      "targets": [
+        {
+          "datasource": {
+            "type": "prometheus",
+            "uid": "PBFA97CFB590B2093"
+          },
+          "editorMode": "code",
+          "expr": "sum(rate(container_network_transmit_bytes_total{name=~\".+\", container_label_com_docker_swarm_node_id=~\"$node\"}[$interval])) by (name)",
+          "intervalFactor": 2,
+          "legendFormat": "{{name}}",
+          "range": true,
+          "refId": "A",
+          "step": 2
+        }
+      ],
+      "thresholds": [],
+      "timeRegions": [],
+      "title": "Outgoing Network Traffic per Container",
+      "tooltip": {
+        "shared": true,
+        "sort": 0,
+        "value_type": "individual"
+      },
+      "type": "graph",
+      "xaxis": {
+        "mode": "time",
+        "show": true,
+        "values": []
+      },
+      "yaxes": [
+        {
+          "format": "Bps",
+          "logBase": 1,
+          "show": true
+        },
+        {
+          "format": "short",
+          "logBase": 1,
+          "show": false
+        }
+      ],
+      "yaxis": {
+        "align": false
+      }
+    }
+  ],
+  "schemaVersion": 37,
+  "style": "dark",
+  "tags": [
+    "prometheus",
+    "cAdvisor",
+    "node-exporter",
+    "alertmanager"
+  ],
+  "templating": {
+    "list": [
+      {
+        "auto": true,
+        "auto_count": 50,
+        "auto_min": "50s",
+        "current": {
+          "selected": false,
+          "text": "auto",
+          "value": "$__auto_interval_interval"
+        },
+        "hide": 0,
+        "label": "Interval",
+        "name": "interval",
+        "options": [
+          {
+            "selected": true,
+            "text": "auto",
+            "value": "$__auto_interval_interval"
+          },
+          {
+            "selected": false,
+            "text": "30s",
+            "value": "30s"
+          },
+          {
+            "selected": false,
+            "text": "1m",
+            "value": "1m"
+          },
+          {
+            "selected": false,
+            "text": "2m",
+            "value": "2m"
+          },
+          {
+            "selected": false,
+            "text": "3m",
+            "value": "3m"
+          },
+          {
+            "selected": false,
+            "text": "5m",
+            "value": "5m"
+          },
+          {
+            "selected": false,
+            "text": "7m",
+            "value": "7m"
+          },
+          {
+            "selected": false,
+            "text": "10m",
+            "value": "10m"
+          },
+          {
+            "selected": false,
+            "text": "30m",
+            "value": "30m"
+          },
+          {
+            "selected": false,
+            "text": "1h",
+            "value": "1h"
+          },
+          {
+            "selected": false,
+            "text": "6h",
+            "value": "6h"
+          },
+          {
+            "selected": false,
+            "text": "12h",
+            "value": "12h"
+          },
+          {
+            "selected": false,
+            "text": "1d",
+            "value": "1d"
+          },
+          {
+            "selected": false,
+            "text": "7d",
+            "value": "7d"
+          },
+          {
+            "selected": false,
+            "text": "14d",
+            "value": "14d"
+          },
+          {
+            "selected": false,
+            "text": "30d",
+            "value": "30d"
+          }
+        ],
+        "query": "30s,1m,2m,3m,5m,7m,10m,30m,1h,6h,12h,1d,7d,14d,30d",
+        "refresh": 2,
+        "skipUrlSync": false,
+        "type": "interval"
+      },
+      {
+        "current": {
+          "selected": false,
+          "text": "10.0.1.70:8080",
+          "value": "10.0.1.70:8080"
+        },
+        "datasource": {
+          "type": "prometheus",
+          "uid": "PBFA97CFB590B2093"
+        },
+        "definition": "label_values(container_last_seen, instance)",
+        "hide": 0,
+        "includeAll": false,
+        "label": "Node",
+        "multi": true,
+        "name": "server",
+        "options": [],
+        "query": {
+          "query": "label_values(container_last_seen, instance)",
+          "refId": "StandardVariableQuery"
+        },
+        "refresh": 1,
+        "regex": "",
+        "skipUrlSync": false,
+        "sort": 0,
+        "tagValuesQuery": "",
+        "tagsQuery": "",
+        "type": "query",
+        "useTags": false
+      },
+      {
+        "current": {
+          "selected": true,
+          "text": [
+            "7hemy3416k1amfomh6ot9a5cv",
+            "rpsixil74u5g369hg4ikes6w0",
+            "p3uoxingm0oxszdeatytq1yyh"
+          ],
+          "value": [
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+            "rpsixil74u5g369hg4ikes6w0",
+            "p3uoxingm0oxszdeatytq1yyh"
+          ]
+        },
+        "datasource": {
+          "type": "prometheus",
+          "uid": "PBFA97CFB590B2093"
+        },
+        "definition": "label_values(container_last_seen, container_label_com_docker_swarm_node_id)",
+        "hide": 0,
+        "includeAll": false,
+        "label": "Docker Node ID:",
+        "multi": true,
+        "name": "node",
+        "options": [],
+        "query": {
+          "query": "label_values(container_last_seen, container_label_com_docker_swarm_node_id)",
+          "refId": "StandardVariableQuery"
+        },
+        "refresh": 1,
+        "regex": "",
+        "skipUrlSync": false,
+        "sort": 0,
+        "tagValuesQuery": "",
+        "tagsQuery": "",
+        "type": "query",
+        "useTags": false
+      }
+    ]
+  },
+  "time": {
+    "from": "now-5m",
+    "to": "now"
+  },
+  "timepicker": {
+    "refresh_intervals": [
+      "5s",
+      "10s",
+      "30s",
+      "1m",
+      "5m",
+      "15m",
+      "30m",
+      "1h",
+      "2h",
+      "1d"
+    ],
+    "time_options": [
+      "5m",
+      "15m",
+      "1h",
+      "6h",
+      "12h",
+      "24h",
+      "2d",
+      "7d",
+      "30d"
+    ]
+  },
+  "timezone": "browser",
+  "title": "Docker-Swarm-Monitor-v2",
+  "uid": "2gSjFKi4z",
+  "version": 1,
+  "weekStart": ""
+}

monitoring/grafana/dashboards/containers/logging-universal-dashboard_rev1.json

@@ -0,0 +1,926 @@
+{
+  "annotations": {
+    "list": [
+      {
+        "builtIn": 1,
+        "datasource": {
+          "type": "datasource",
+          "uid": "grafana"
+        },
+        "enable": true,
+        "hide": true,
+        "iconColor": "rgba(0, 211, 255, 1)",
+        "name": "Annotations & Alerts",
+        "target": {
+          "limit": 100,
+          "matchAny": false,
+          "tags": [],
+          "type": "dashboard"
+        },
+        "type": "dashboard"
+      }
+    ]
+  },
+  "description": "Universal and flexible dashboard for logging",
+  "editable": true,
+  "fiscalYearStartMonth": 0,
+  "gnetId": 12611,
+  "graphTooltip": 0,
+  "id": 11,
+  "links": [],
+  "liveNow": false,
+  "panels": [
+    {
+      "datasource": {
+        "type": "loki",
+        "uid": "P00201832B18B88C3"
+      },
+      "description": "Total count of log lines in the specified time range",
+      "fieldConfig": {
+        "defaults": {
+          "color": {
+            "mode": "thresholds"
+          },
+          "mappings": [
+            {
+              "options": {
+                "match": "null",
+                "result": {
+                  "color": "rgb(31, 255, 7)",
+                  "text": "0"
+                }
+              },
+              "type": "special"
+            }
+          ],
+          "thresholds": {
+            "mode": "absolute",
+            "steps": [
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+      "1m",
+      "5m",
+      "15m",
+      "30m",
+      "1h",
+      "2h",
+      "1d"
+    ]
+  },
+  "timezone": "",
+  "title": "Container logs",
+  "uid": "fRIvzUZMf",
+  "version": 4,
+  "weekStart": ""
+}

monitoring/grafana/dashboards/dashboard.yml

@@ -0,0 +1,10 @@
+# config file version
+apiVersion: 1
+
+providers:
+  - name: dashboards
+    type: file
+    updateIntervalSeconds: 30
+    options:
+      path: /etc/grafana/provisioning/dashboards
+      foldersFromFilesStructure: true

monitoring/grafana/datasource.yml

@@ -0,0 +1,12 @@
+# config file version
+apiVersion: 1
+
+datasources:
+- name: Prometheus
+  type: prometheus
+  access: proxy
+  url: http://prometheus:9090
+- name: LokiLogs
+  type: loki
+  access: direct
+  url: http://loki:3100

monitoring/grafana/grafana.ini

@@ -0,0 +1,22 @@
+[paths]
+provisioning = /etc/grafana/provisioning/
+
+[server]
+enable_gzip = true
+#protocol = https
+#;http_addr =	
+#http_port = 3000	
+#domain = localhost	
+#enforce_domain = false	
+#root_url = https://localhost:3000	
+#router_logging = false	
+#static_root_path = public	
+#cert_file = /etc/certs/cert.pem	
+#cert_key = /etc/certs/cert-key.pem
+
+[security]
+# If you want to embed grafana into an iframe for example
+allow_embedding = true
+
+[users]
+default_theme = dark

monitoring/loki/loki-config.yml

@@ -0,0 +1,63 @@
+auth_enabled: false
+
+server:
+  http_listen_port: 3100
+  grpc_listen_port: 9096
+  grpc_server_max_concurrent_streams: 0
+
+ingester:
+  wal:
+    enabled: true
+    dir: /tmp/wal
+  lifecycler:
+    address: 127.0.0.1
+    ring:
+      kvstore:
+        store: inmemory
+      replication_factor: 1
+    final_sleep: 0s
+  chunk_idle_period: 1h
+  max_chunk_age: 1h
+  chunk_target_size: 1048576
+  chunk_retain_period: 30s
+  max_transfer_retries: 0
+
+schema_config:
+  configs:
+    - from: 2020-07-01
+      store: boltdb-shipper
+      object_store: aws
+      schema: v11
+      index:
+        prefix: index_
+        period: 24h
+
+storage_config:
+  boltdb_shipper:
+    active_index_directory: /loki/boltdb-shipper-active
+    cache_location: /loki/boltdb-shipper-cache
+    resync_interval: 30s
+    shared_store: s3
+  aws:
+    s3: http://${MO_SECURITY_ADMIN_USER}:${MO_SECURITY_ADMIN_PASSWORD}@minio-01.:9000/loki
+    s3forcepathstyle: true
+
+compactor:
+  working_directory: /loki/boltdb-shipper-compactor
+  shared_store: s3
+
+limits_config:
+  reject_old_samples: true
+  reject_old_samples_max_age: 168h
+  ingestion_rate_mb: 100
+  ingestion_burst_size_mb: 150
+  max_concurrent_tail_requests: 200
+  max_cache_freshness_per_query: 10m
+  max_streams_per_user: 500
+
+chunk_store_config:
+  max_look_back_period: 0s
+
+table_manager:
+  retention_deletes_enabled: false
+  retention_period: 0s

monitoring/package-metadata.json

@@ -0,0 +1,26 @@
+{
+  "id": "monitoring",
+  "name": "Monitoring package",
+  "description": "A package for monitoring the platform services",
+  "type": "infrastructure",
+  "version": "0.0.1",
+  "dependencies": [],
+  "environmentVariables": {
+    "GF_SECURITY_ADMIN_USER": "admin",
+    "GF_SECURITY_ADMIN_PASSWORD": "dev_password_only",
+    "GF_SMTP_ENABLED": "false",
+    "GF_SMTP_HOST": "localhost:25",
+    "GF_SMTP_USER": "",
+    "GF_SMTP_PASSWORD": "",
+    "KC_GRAFANA_SSO_ENABLED": "false",
+    "KC_REALM_NAME": "platform-realm",
+    "KC_FRONTEND_URL": "http://localhost:9088",
+    "KC_API_URL": "http://identity-access-manager-keycloak:8080",
+    "KC_GRAFANA_CLIENT_ID": "grafana-oauth",
+    "KC_GRAFANA_CLIENT_SECRET": "CV14QfwnpYFj1IH5dK5lScPNCYAIYP1c",
+    "KC_GRAFANA_ROOT_URL": "http://localhost:3000",
+    "GF_SERVER_DOMAIN": "localhost",
+    "MO_SECURITY_ADMIN_USER": "admin",
+    "MO_SECURITY_ADMIN_PASSWORD": "dev_password_only"
+  }
+}

monitoring/prometheus/prometheus.yml

@@ -0,0 +1,76 @@
+global:
+  scrape_interval: 15s
+
+scrape_configs:
+  - job_name: "prometheus"
+    static_configs:
+    - targets: ["prometheus:9090"]
+
+  - job_name: "grafana"
+    static_configs:
+    - targets: ["grafana:3000"]
+
+  # Create a job for Docker daemons.
+  - job_name: 'docker'
+    dockerswarm_sd_configs:
+      - host: unix:///var/run/docker.sock
+        role: nodes
+    relabel_configs:
+      # Fetch metrics on port 9323.
+      - source_labels: [__meta_dockerswarm_node_address]
+        target_label: __address__
+        replacement: $1:9323
+      # Set hostname as instance label
+      - source_labels: [__meta_dockerswarm_node_hostname]
+        target_label: instance
+
+  # Create a job for reading metrics from nodes
+  - job_name: 'node-exporter'
+    dns_sd_configs:
+    - names:
+      - 'tasks.node-exporter'
+      type: 'A'
+      port: 9100
+
+  # Create a job for reading metrics from containers
+  - job_name: 'cadvisor'
+    dns_sd_configs:
+    - names:
+      - 'tasks.cadvisor'
+      type: 'A'
+      port: 8080
+
+  # Create a job for Docker Swarm services with particular labels (one target for the whole service, possibly multiple containers)
+  - job_name: 'dockerswarm-services'
+    dockerswarm_sd_configs:
+      - host: unix:///var/run/docker.sock
+        role: services
+    relabel_configs:
+      # Only keep services that have a `prometheus-job-service` label.
+      - source_labels: [__meta_dockerswarm_service_label_prometheus_job_service]
+        regex: .+
+        action: keep
+      # Use the prometheus-job Swarm label as Prometheus job label.
+      - source_labels: [__meta_dockerswarm_service_label_prometheus_job_service]
+        target_label: job
+      # Use the prometheus-address Swarm label as the target address for swarm service.
+      - source_labels: [__meta_dockerswarm_service_label_prometheus_address]
+        target_label: __address__
+
+  # Create a job for Docker Swarm container with particular labels (one target per container/task)
+  - job_name: 'dockerswarm-tasks'
+    dockerswarm_sd_configs:
+      - host: unix:///var/run/docker.sock
+        role: tasks
+    relabel_configs:
+      # Only keep containers that should be running.
+      - source_labels: [__meta_dockerswarm_task_desired_state]
+        regex: running
+        action: keep
+      # Only keep containers that have a `prometheus-job-task` label.
+      - source_labels: [__meta_dockerswarm_service_label_prometheus_job_task]
+        regex: .+
+        action: keep
+      # Use the prometheus-job Swarm label as Prometheus job label.
+      - source_labels: [__meta_dockerswarm_service_label_prometheus_job_task]
+        target_label: job

monitoring/promtail/promtail-config.yml

@@ -0,0 +1,47 @@
+server:
+  http_listen_address: 0.0.0.0
+  http_listen_port: 9080
+
+positions:
+  filename: /tmp/positions.yaml
+
+clients:
+- url: http://loki:3100/loki/api/v1/push
+
+scrape_configs:
+
+- job_name: containers
+  static_configs:
+  - targets:
+      - localhost
+    labels:
+      job: containerlogs
+      __path__: /host/containers/*/*log
+
+  pipeline_stages:
+  - json:
+      expressions:
+        log: log
+        stream: stream
+        time: time
+        tag: attrs.tag
+        stack_name: attrs."com.docker.stack.namespace"
+        swarm_service_name: attrs."com.docker.swarm.service.name"
+        swarm_task_name: attrs."com.docker.swarm.task.name"
+        swarm_node_id: attrs."com.docker.swarm.node.id"
+  - regex:
+      expression: "^/host/containers/(?P<container_id>.{12}).+/.+-json.log$"
+      source: filename
+  - timestamp:
+      format: RFC3339Nano
+      source: time
+  - labels:
+      stream:
+      container_id:
+      tag:
+      stack_name:
+      swarm_service_name:
+      swarm_task_name:
+      swarm_node_id:
+  - output:
+      source: log

monitoring/swarm.sh

@@ -0,0 +1,101 @@
+#!/bin/bash
+
+declare ACTION=""
+declare MODE=""
+declare COMPOSE_FILE_PATH=""
+declare UTILS_PATH=""
+declare STACK="monitoring"
+
+function init_vars() {
+  ACTION=$1
+  MODE=$2
+
+  COMPOSE_FILE_PATH=$(
+    cd "$(dirname "${BASH_SOURCE[0]}")" || exit
+    pwd -P
+  )
+
+  UTILS_PATH="${COMPOSE_FILE_PATH}/../utils"
+
+  readonly ACTION
+  readonly MODE
+  readonly COMPOSE_FILE_PATH
+  readonly UTILS_PATH
+  readonly STACK
+}
+
+# shellcheck disable=SC1091
+function import_sources() {
+  source "${UTILS_PATH}/docker-utils.sh"
+  source "${UTILS_PATH}/config-utils.sh"
+  source "${UTILS_PATH}/log.sh"
+}
+
+function initialize_package() {
+  local monitoring_dev_compose_filename=""
+  local monitoring_cluster_compose_filename=""
+
+  if [[ "${CLUSTERED_MODE}" == "true" ]]; then
+    monitoring_cluster_compose_filename="docker-compose.cluster.yml"
+    export NUM_MINIO_SERVERS=4
+  else
+    export NUM_MINIO_SERVERS=1
+  fi
+
+  if [[ "${MODE}" == "dev" ]]; then
+    log info "Running package in DEV mode"
+    monitoring_dev_compose_filename="docker-compose.dev.yml"
+  else
+    log info "Running package in PROD mode"
+  fi
+
+  (
+    docker::deploy_service $STACK "${COMPOSE_FILE_PATH}" "docker-compose.yml" "$monitoring_dev_compose_filename" "$monitoring_cluster_compose_filename"
+  ) || {
+    log error "Failed to deploy package"
+    exit 1
+  }
+}
+
+function scale_services_down() {
+  docker::service_destroy $STACK "cadvisor" "node-exporter" "promtail"
+
+  docker::scale_services $STACK 0
+}
+
+function destroy_package() {
+  docker::stack_destroy $STACK
+
+  if [[ $CLUSTERED_MODE == "true" ]]; then
+    sleep 5
+    log warn "Volumes are only deleted on the host on which the command is run. Monitoring volumes on other nodes are not deleted"
+  fi
+
+  docker::prune_configs "grafana" "prometheus" "promtail" "loki"
+}
+
+main() {
+  init_vars "$@"
+  import_sources
+
+  if [[ "${ACTION}" == "init" ]] || [[ "${ACTION}" == "up" ]]; then
+    if [[ "${CLUSTERED_MODE}" == "true" ]]; then
+      log info "Running package in Cluster node mode"
+    else
+      log info "Running package in Single node mode"
+    fi
+
+    initialize_package
+  elif [[ "${ACTION}" == "down" ]]; then
+    log info "Scaling down package"
+
+    scale_services_down
+  elif [[ "${ACTION}" == "destroy" ]]; then
+    log info "Destroying package"
+    destroy_package
+  else
+    log error "Valid options are: init, up, down, or destroy"
+  fi
+}
+
+main "$@"

openhim-mediator-data-stream/config/config.json

@@ -0,0 +1,246 @@
+{
+    "debeziumConfigurations": {
+      "databaseServerName" : "isanteplus-mysql",
+      "databaseHostName" : "isanteplus-mysql",
+      "databaseServerId" : "223344",
+      "databasePort" : "3306",
+      "databaseUser" : "root",
+      "databasePassword" : "debezium",
+      "databaseName" : "openmrs",
+      "databaseOffsetStorage" : "data/offset.dat",
+      "databaseHistory" : "data/dbhistory.dat",
+      "snapshotMode" : "schema_only"
+     },
+    "eventConfigurations": {
+      "location": {
+        "enabled": "false",
+        "title": "Location",
+        "parentTable": "location",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/location/{uuid}?v=full",
+          "fhir": "/Location/{uuid}"
+        }
+      },
+      "concept": {
+        "enabled": "false",
+        "title": "Concept",
+        "parentTable": "concept",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/concept/{uuid}?v=full"
+        }
+      },
+      "cohort": {
+        "enabled": "true",
+        "title": "Cohort",
+        "parentTable": "cohort",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/cohort/{uuid}?v=full",
+          "fhir": "/Group/{uuid}"
+        }
+      },
+      "visittype": {
+        "enabled": "false",
+        "title": "Visit Type",
+        "parentTable": "visittype",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/visittype/{uuid}?v=full"
+        }
+      },
+      "person_address": {
+        "enabled": "false",
+        "title": "PersonAddress",
+        "parentTable": "person_address",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/person/{parent-uuid}/address/{uuid}?v=full"
+        }
+      },
+      "person_name": {
+        "enabled": "false",
+        "title": "PersonName",
+        "parentTable": "person_name",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/person/{parent-uuid}/name/{uuid}?v=full"
+        }
+      },
+      "patient_identifier": {
+        "enabled": "false",
+        "title": "PatientIdentifier",
+        "parentTable": "patient_identifier",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/patient/{parent-uuid}/identifier/{uuid}?v=full"
+        }
+      },
+      "person_attribute": {
+        "enabled": "false",
+        "title": "PersonAttribute",
+        "parentTable": "person_attribute",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/person/{parent-uuid}/attribute/{uuid}?v=full"
+        }
+      },
+      "person": {
+        "enabled": "true",
+        "title": "Person",
+        "parentTable": "person",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/person/{uuid}?v=full",
+          "fhir": "/Person/{uuid}"
+        }
+      },
+      "provider": {
+        "enabled": "true",
+        "title": "Provider",
+        "parentTable": "provider",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/provider/{uuid}?v=full",
+          "fhir": "/Provider/{uuid}"
+        }
+      },
+      "user": {
+        "enabled": "false",
+        "title": "User",
+        "parentTable": "user",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/user/{uuid}?v=full"
+        }
+      },
+      "patient": {
+        "enabled": "true",
+        "title": "Patient",
+        "parentTable": "person",
+        "parentForeignKey": "person_id",
+        "childPrimaryKey":"patient_id",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/patient/{uuid}?v=full",
+          "fhir": "/Patient/{uuid}"
+        }
+      },
+      "relationship": {
+        "enabled": "true",
+        "title": "Relationship",
+        "parentTable": "relationship",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/relationship/{uuid}?v=full",
+          "fhir": "/Relationship/{uuid}"
+        }
+      },
+      "drug": {
+        "enabled": "true",
+        "title": "Drug",
+        "parentTable": "drug",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/drug/{uuid}?v=full",
+          "fhir": "/Drug/{uuid}"
+        }
+      },
+      "allergy": {
+        "enabled": "true",
+        "title": "Allergy",
+        "parentTable": "allergy",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/allergy/{uuid}?v=full",
+          "fhir": "/AllergyIntolerance/{uuid}"
+        }
+      },
+      "form":{
+        "enabled": "true",
+        "title": "Form",
+        "parentTable": "form",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/form/{uuid}?v=full"
+        }
+      },
+      "order": {
+        "enabled": "true",
+        "title": "Order",
+        "parentTable": "order",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/order/{uuid}?v=full",
+          "fhir": "/Order/{uuid}"
+        }
+      },
+      "drug_order":{
+        "enabled": "true",
+        "title": "DrugOrder",
+        "parentTable": "drug_order",
+        "parentForeignKey": "order_id",
+        "childPrimaryKey":"order_id",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/drug_order/{uuid}?v=full",
+          "fhir": "/MedicationRequest/{uuid}"
+        }
+      },
+      "test_order": {
+        "enabled": "true",
+        "title": "TestOrder",
+        "parentTable": "test_order",
+        "parentForeignKey": "order_id",
+        "childPrimaryKey":"order_id",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/test_order/{uuid}?v=full",
+          "fhir": "/ProcedureRequest/{uuid}"
+        }
+      },
+      "obs": {
+        "enabled": "true",
+        "title": "Observation",
+        "parentTable": "obs",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/obs/{uuid}?v=full",
+          "fhir": "/Observation/{uuid}"
+        }
+      },
+      "encounter":{
+        "enabled": "true",
+        "title": "Encounter",
+        "parentTable": "encounter",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/encounter/{uuid}?v=full",
+          "fhir": "/Encounter/{uuid}"
+        }
+      },
+      "visit":{
+        "enabled": "false",
+        "title": "Visit",
+        "parentTable": "visit",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/visit/{uuid}?v=full",
+          "fhir": "/Encounter/{uuid}"
+        }
+      },
+      "program":{
+        "enabled": "true",
+        "title": "Program",
+        "parentTable": "program",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/program/{uuid}?v=full",
+          "fhir": "/Program/{uuid}"
+        }
+      },
+      "programenrollment":{
+        "enabled": "true",
+        "title": "Program Enrollment",
+        "parentTable": "programenrollment",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/programenrollment/{uuid}?v=full",
+          "fhir": "/Programenrollment/{uuid}"
+        }
+      },
+      "privilege":{
+        "enabled": "true",
+        "title": "Privilege",
+        "parentTable": "privilege",
+        "linkTemplates": {
+          "rest": "/ws/rest/v1/privilege/{uuid}?v=full"
+        }
+      },
+      "audit_message":{
+        "enabled": "true",
+        "title": "AuditMessage",
+        "parentTable": "audit_message",
+        "linkTemplates": {
+          "rest": "/ws/rest/sync2/messages/{uuid}"
+        }
+      }
+    }
+  }

openhim-mediator-data-stream/docker-compose.yml

@@ -0,0 +1,41 @@
+version: '3.9'
+
+services:
+  openhim-mediator-data-stream:
+    image: ghcr.io/i-tech-uw/openmrs-fhir-analytics/streaming-binlog:latest
+    container_name: streaming-pipeline
+    healthcheck:
+      test: "exit 0"
+    #volumes:
+      # data is the directory which you want to persist the generated parquet files
+      # - ./configs/streaming-pipeline/parquet:/tmp
+    environment:
+      - OPENMRS_URL=http://isanteplus:8080/openmrs
+      - OPENMRS_USERNAME=${IPLUS_ADMIN_USER-Admin}
+      - OPENMRS_PASSWORD=${IPLUS_ADMIN_PW-Admin123}
+      - SINK_URL=${OPENHIM_STREAMING_SINK_URL-https://openhim-ssl.sedish-haiti.org/SHR/fhir}
+      - SINK_USERNAME=${OPENHIM_STREAMING_CLIENT-streaming}
+      - SINK_PASSWORD=${OPENHIM_STREAMING_PW-streaming}
+      - JDBC_FETCH_SIZE=10000
+      - JDBC_MAX_POOL_SIZE=50
+      - JDBC_INITIAL_POOL_SIZE=10
+      - JDBC_DRIVER_CLASS=com.mysql.cj.jdbc.Driver
+      # the 2 variable below should be same as volume mappings above
+      - PARQUET_PATH=
+      - FHIR_DEBEZIUM_CONFIG_PATH=/deployments/config.json
+    networks:
+      - default
+      - isanteplus
+      - openhim
+    configs:
+      - source: pipeline-config
+        target: /deployments/config.json
+
+networks:
+  isanteplus:
+    external: true
+    name: isanteplus
+  openhim:
+    name: openhim
+    external: true
+  default:

openhim-mediator-data-stream/package-metadata.json

@@ -0,0 +1,9 @@
+{
+  "id": "openhim-mediator-data-stream",
+  "name": "iSantePlus Data Stream",
+  "description": "Streaming service for data from iSantePlus to a FHIR store.",
+  "type": "use-case",
+  "version": "0.0.1",
+  "dependencies": [],
+  "environmentVariables": {}
+}

openhim-mediator-data-stream/swarm.sh

@@ -0,0 +1,80 @@
+#!/bin/bash
+
+declare ACTION=""
+declare MODE=""
+declare COMPOSE_FILE_PATH=""
+declare UTILS_PATH=""
+declare SERVICE_NAMES=()
+
+function init_vars() {
+  ACTION=$1
+  MODE=$2
+
+  COMPOSE_FILE_PATH=$(
+    cd "$(dirname "${BASH_SOURCE[0]}")" || exit
+    pwd -P
+  )
+
+  UTILS_PATH="${COMPOSE_FILE_PATH}/../utils"
+
+  SERVICE_NAMES=(
+    "openhim-mediator-data-stream"
+  )
+
+  readonly ACTION
+  readonly MODE
+  readonly COMPOSE_FILE_PATH
+  readonly UTILS_PATH
+  readonly SERVICE_NAMES
+}
+
+# shellcheck disable=SC1091
+function import_sources() {
+  source "${UTILS_PATH}/docker-utils.sh"
+  source "${UTILS_PATH}/log.sh"
+}
+
+function initialize_package() {
+  local package_dev_compose_filename=""
+  if [[ "${MODE}" == "dev" ]]; then
+    log info "Running package in DEV mode"
+    package_dev_compose_filename="docker-compose.dev.yml"
+  else
+    log info "Running package in PROD mode"
+  fi
+
+  (
+    docker::deploy_service "${COMPOSE_FILE_PATH}" "$package_dev_compose_filename"
+    docker::deploy_sanity "${SERVICE_NAMES[@]}"
+  ) || {
+    log error "Failed to deploy package"
+    exit 1
+  }
+}
+
+function destroy_package() {
+  docker::service_destroy "${SERVICE_NAMES[@]}"
+}
+
+main() {
+  init_vars "$@"
+  import_sources
+
+  if [[ "${ACTION}" == "init" ]] || [[ "${ACTION}" == "up" ]]; then
+    log info "Running package in Single node mode"
+
+    initialize_package
+  elif [[ "${ACTION}" == "down" ]]; then
+    log info "Scaling down package"
+
+    docker::scale_services_down "${SERVICE_NAMES[@]}"
+  elif [[ "${ACTION}" == "destroy" ]]; then
+    log info "Destroying package"
+
+    destroy_package
+  else
+    log error "Valid options are: init, up, down, or destroy"
+  fi
+}
+
+main "$@"

platform-test-harness/test.docker-compose.yml

@@ -0,0 +1,48 @@
+version: "3.8"
+
+services:  
+  # QA Framework
+  qa:
+    image: ghcr.io/isanteplus/isanteplus-qaframework:latest
+    container_name: qa
+    environment:
+      - ISANTEPLUS_URL=http://isanteplus:8080/openmrs
+      - ISANTEPLUS_USER=admin
+      - ISANTEPLUS_PW=Admin123
+      - REMOTE_URL_CHROME=http://chrome:4444/wd/hub
+      - TEST_OPTIONS="-Dcucumber.filter.tags=@login"
+    networks:
+      - local_facility
+
+  chrome:
+    image: selenium/standalone-chrome:latest
+    hostname: chrome
+    container_name: chrome
+    ports:
+      - "4444:4444"
+      - "7900:7900"
+    networks:
+      - local_facility
+  # Newman Tests
+  newman:
+    image: postman/newman
+    volumes:
+      - ./.postman:/.postman
+    entrypoint: newman run $POSTMAN_COLLECTION -e /.postman/env.json --insecure --timeout-request 20000 --delay-request 1000
+    networks:
+      - local_facility
+
+  wait:
+    container_name: wait
+    image: ghcr.io/i-tech-uw/wait-for-openmrs-action:v0.4.0 
+    command:
+    - "http://isanteplus:8080/openmrs"
+    - "20" 
+    - "10000"
+    networks:
+      - local_facility
+
+networks:
+  local_facility:
+    external: true
+    name: haitihealthbox_local_facility

reverse-proxy-caddy/build/Dockerfile

@@ -0,0 +1,14 @@
+ARG CADDY_VERSION=2.6.4
+FROM caddy:${CADDY_VERSION}-builder AS builder
+
+RUN xcaddy build \
+    --with github.com/lucaslorentz/caddy-docker-proxy/v2 \
+    --with github.com/corazawaf/coraza-caddy/v2
+
+FROM caddy:${CADDY_VERSION}-alpine
+
+COPY --from=builder /usr/bin/caddy /usr/bin/caddy
+
+RUN touch /Caddyfile
+
+CMD ["caddy", "docker-proxy", "--caddyfile-path", "/Caddyfile"]

reverse-proxy-caddy/config/Caddyfile

@@ -0,0 +1,34 @@
+{
+        order coraza_waf first
+}
+
+:80 {
+    handle /openmrs/* {
+        reverse_proxy isanteplus:8080
+    }
+
+    handle_path /openhim/* {
+        reverse_proxy openhim-console:80
+    }
+
+    handle_path /openhim-core-http/* {
+        reverse_proxy openhim-core:5001
+    }
+    
+    handle_path /openhim-core-ssl/* {
+        reverse_proxy openhim-core:5000 {
+            transport http {
+                tls_insecure_skip_verify
+            }
+        }
+        
+    }
+
+    handle_path /openhim-core-api/* {
+        reverse_proxy openhim-core:8080 {
+            transport http {
+                tls_insecure_skip_verify
+            }
+        }
+    }
+}

reverse-proxy-caddy/docker-compose.yml

@@ -0,0 +1,27 @@
+version: '3.9'
+
+services:
+  caddy:
+    container_name: caddy
+    build:
+      context: ./build
+      dockerfile: Dockerfile
+    ports:
+      - 80:80
+      - 443:443
+    environment:
+      - CADDY_INGRESS_NETWORKS=reverse-proxy_public
+    volumes:
+      - /var/run/docker.sock:/var/run/docker.sock
+      - caddy-data:/data
+      - ./ruleset:/ruleset
+      - audit:/audit
+      - ./caddy/Caddyfile:/Caddyfile
+    restart: unless-stopped
+    networks:
+      - public
+
+networks:
+  public:
+    name: reverse-proxy_public
+    external: true

reverse-proxy-caddy/package-metadata.json

@@ -0,0 +1,9 @@
+{
+  "id": "reverse-proxy-caddy",
+  "name": "Caddy Reverse Proxy with Coraza WAF",
+  "description": "A Caddy reverse proxy with docker integration and coraza WAF",
+  "type": "infrastructure",
+  "version": "0.0.1",
+  "dependencies": [],
+  "environmentVariables": {}
+}

reverse-proxy-caddy/swarm.sh

@@ -0,0 +1,80 @@
+#!/bin/bash
+
+declare ACTION=""
+declare MODE=""
+declare COMPOSE_FILE_PATH=""
+declare UTILS_PATH=""
+declare SERVICE_NAMES=()
+
+function init_vars() {
+  ACTION=$1
+  MODE=$2
+
+  COMPOSE_FILE_PATH=$(
+    cd "$(dirname "${BASH_SOURCE[0]}")" || exit
+    pwd -P
+  )
+
+  UTILS_PATH="${COMPOSE_FILE_PATH}/../utils"
+
+  SERVICE_NAMES=(
+    "reverse-proxy-caddy"
+  )
+
+  readonly ACTION
+  readonly MODE
+  readonly COMPOSE_FILE_PATH
+  readonly UTILS_PATH
+  readonly SERVICE_NAMES
+}
+
+# shellcheck disable=SC1091
+function import_sources() {
+  source "${UTILS_PATH}/docker-utils.sh"
+  source "${UTILS_PATH}/log.sh"
+}
+
+function initialize_package() {
+  local package_dev_compose_filename=""
+  if [[ "${MODE}" == "dev" ]]; then
+    log info "Running package in DEV mode"
+    package_dev_compose_filename="docker-compose.dev.yml"
+  else
+    log info "Running package in PROD mode"
+  fi
+
+  (
+    docker::deploy_service "${COMPOSE_FILE_PATH}" "$package_dev_compose_filename"
+    docker::deploy_sanity "${SERVICE_NAMES[@]}"
+  ) || {
+    log error "Failed to deploy package"
+    exit 1
+  }
+}
+
+function destroy_package() {
+  docker::service_destroy "${SERVICE_NAMES[@]}"
+}
+
+main() {
+  init_vars "$@"
+  import_sources
+
+  if [[ "${ACTION}" == "init" ]] || [[ "${ACTION}" == "up" ]]; then
+    log info "Running package in Single node mode"
+
+    initialize_package
+  elif [[ "${ACTION}" == "down" ]]; then
+    log info "Scaling down package"
+
+    docker::scale_services_down "${SERVICE_NAMES[@]}"
+  elif [[ "${ACTION}" == "destroy" ]]; then
+    log info "Destroying package"
+
+    destroy_package
+  else
+    log error "Valid options are: init, up, down, or destroy"
+  fi
+}
+
+main "$@"

utils/config-utils.sh

@@ -0,0 +1,433 @@
+#!/bin/bash
+#
+# Library name: config
+# This is a library that contains functions to assist with docker configs
+#
+# For functions using `declare -n`, note the following explanation https://linuxhint.com/bash_declare_command/#:~:text=giving%20them%20attributes.-,Namerefs,-If%20you%20are
+
+. "$(pwd)/utils/log.sh"
+
+# Sets the digest variables for the conf raft files in the provided docker compose file
+#
+# Requirements:
+# - All configs must have a file and name property
+# - The name property must end in -${DIGEST_VAR_NAME:?err} (eg. name: my-file-${MY_FILE_DIGEST:?err})
+#
+# Arguments:
+# - $1 : docker compose directory path (eg. /home/user/project/docker-compose.yml)
+#
+# Exports:
+# As many digest environment variables as are declared in the provided docker compose file
+#
+config::set_config_digests() {
+    local -r DOCKER_COMPOSE_PATH="${1:?$(missing_param "set_config_digests")}"
+
+    # Get configs files and names from yml file
+    local -r files=($(yq '.configs."*.*".file' "${DOCKER_COMPOSE_PATH}"))
+    local -r names=($(yq '.configs."*.*".name' "${DOCKER_COMPOSE_PATH}"))
+    local -r compose_folder_path="${DOCKER_COMPOSE_PATH%/*}"
+
+    if [[ "${files[*]}" != *"null"* ]] && [[ "${names[*]}" != *"null"* ]]; then
+        log info "Setting config digests"
+
+        for ((i = 0; i < ${#files[@]}; i++)); do
+            file=${files[$i]}
+            name=${names[$i]}
+
+            file_name="${compose_folder_path}${file//\.\///}" # TODO: Throw an error if the file name is too long to allow for a unique enough digest
+            env_var_name=$(echo "${name}" | grep -P -o "{.*:?err}" | sed 's/[{}]//g' | sed 's/:?err//g')
+
+            if [[ -n "$env_var_name" ]]; then
+                # generate and truncate the digest to conform to the 64 character restriction on docker config names
+                env_declaration_characters=":?err" # '${:?err}' from setting an env variable
+                remainder=$((64 - (${#name} - ${#env_var_name} - ${#env_declaration_characters})))
+                export "${env_var_name}"="$(cksum "${file_name}" | awk '{print $1}' | cut -c -${remainder})"
+            fi
+        done
+    elif [[ "${files[*]}" == *"null"* ]]; then
+        log error "No files found to set the digest in:\n $DOCKER_COMPOSE_PATH"
+        exit 1
+    else
+        log error "You should specify names for the files in:\n $DOCKER_COMPOSE_PATH"
+        exit 1
+    fi
+}
+
+# Removes stale docker configs based on the provided docker-compose file
+#
+# Requirements:
+# - All configs must have a file and name property
+# - The name property must end in -${DIGEST_VAR_NAME:?err} (eg. name: my-file-${MY_FILE_DIGEST:?err})
+#
+# Arguments:
+# - $1 : docker compose directory path (eg. /home/user/project/docker-compose.yml)
+# - $2 : config label (eg. logstash)
+#
+config::remove_stale_service_configs() {
+    local -r DOCKER_COMPOSE_PATH="${1:?$(missing_param "remove_stale_service_configs" "DOCKER_COMPOSE_PATH")}"
+    local -r CONFIG_LABEL="${2:?$(missing_param "remove_stale_service_configs" "CONFIG_LABEL")}"
+
+    local -r compose_names=($(yq '.configs."*.*".name' "${DOCKER_COMPOSE_PATH}"))
+    local configs_to_remove=()
+
+    if [[ "${compose_names[*]}" != "null" ]]; then
+        for compose_name in "${compose_names[@]}"; do
+            compose_name_without_env=$(echo "${compose_name}" | sed 's/-\${.*//g')
+
+            compose_name_occurences=$(for word in "${compose_names[@]}"; do echo "${word}"; done | grep -c "${compose_name_without_env}")
+            if [[ $compose_name_occurences -gt "1" ]]; then
+                log warn "Warning: Duplicate config name (${compose_name_without_env}) was found in ${DOCKER_COMPOSE_PATH}"
+            fi
+
+            raft_ids=($(docker config ls -f "label=name=${CONFIG_LABEL}" -f "name=${compose_name_without_env}" --format "{{.ID}}"))
+            # Only keep the most recent of all configs with the same name
+            if [[ ${#raft_ids[@]} -gt 1 ]]; then
+                most_recent_raft_id="${raft_ids[0]}"
+                for ((i = 1; i < ${#raft_ids[@]}; i++)); do
+                    raft_id=${raft_ids[$i]}
+                    most_recent_raft_created_date=$(docker config inspect -f "{{.CreatedAt}}" "${most_recent_raft_id}")
+                    raft_created_date=$(docker config inspect -f "{{.CreatedAt}}" "${raft_id}")
+                    if [[ $raft_created_date > $most_recent_raft_created_date ]]; then
+                        configs_to_remove+=("${most_recent_raft_id}")
+                        most_recent_raft_id="${raft_id}"
+                    else
+                        configs_to_remove+=("${raft_id}")
+                    fi
+                done
+            fi
+        done
+    else
+        log warn "No name files found in the compose config to be removed"
+    fi
+
+    if [[ "${#configs_to_remove[@]}" -gt 0 ]]; then
+        try \
+            "docker config rm ${configs_to_remove[*]}" \
+            catch \
+            "Failed to remove configs: ${configs_to_remove[*]}"
+    fi
+}
+
+# A function that exists in a loop to see how long that loop has run for, providing a warning
+# at the time specified in argument $3, and exits with code 124 after the time specified in argument $4.
+#
+# Arguments:
+# - $1 : start time of the timeout check
+# - $2 : a message containing reference to the loop that timed out
+# - $3 : timeout time in seconds, default is 300 seconds
+# - $4 : elapsed time to issue running-for-longer-than-expected warning (in seconds), default is 60 seconds
+#
+config::timeout_check() {
+    local start_time=$(($1))
+    local message=$2
+    local exit_time="${3:-300}"
+    local warning_time="${4:-60}"
+
+    local timeDiff=$(($(date +%s) - $start_time))
+    if [[ $timeDiff -ge $warning_time ]] && [[ $timeDiff -lt $(($warning_time + 1)) ]]; then
+        log warn "Warning: Waited $warning_time seconds for $message. This is taking longer than it should..."
+    elif [[ $timeDiff -ge $exit_time ]]; then
+        log error "Fatal: Waited $exit_time seconds for $message. Exiting..."
+        exit 124
+    fi
+}
+
+# A generic function confirming whether or not a containerized api is reachable
+#
+# Requirements:
+# - The function attempts to start up a helper container using the jembi/await-helper image. It is therefore necessary
+#   to specify the docker-compose file to deploy the await-helper container which the await_service_running function
+#   relies on. Details on configuring the await-helper can be found at https://github.com/jembi/platform-await-helper.
+#
+# Arguments:
+# - $1 : the service being awaited
+# - $2 : path to await-helper compose.yml file (eg. ~/projects/platform/dashboard-visualiser-jsreport/docker-compose.await-helper.yml)
+# - $3 : desired number of instances of the awaited-service
+# - $4 : stack name that the service falls under (eg. openhim)
+# - $5 : (optional) the max time allowed to wait for a service's response, defaults to 300 seconds
+# - $6 : (optional) elapsed time to throw a warning, defaults to 60 seconds
+#
+config::await_service_running() {
+    local -r SERVICE_NAME="${1:?$(missing_param "await_service_running" "SERVICE_NAME")}"
+    local -r AWAIT_HELPER_FILE_PATH="${2:?$(missing_param "await_service_running" "AWAIT_HELPER_FILE_PATH")}"
+    local -r SERVICE_INSTANCES="${3:?$(missing_param "await_service_running" "SERVICE_INSTANCES")}"
+    local -r STACK_NAME="${4:?$(missing_param "await_service_running" "STACK_NAME")}"
+    local -r exit_time="${5:-}"
+    local -r warning_time="${6:-}"
+    local start_time
+    start_time=$(date +%s)
+
+    docker service rm "$STACK_NAME"_await-helper &>/dev/null
+
+    try "docker stack deploy -c $AWAIT_HELPER_FILE_PATH $STACK_NAME" throw "Failed to deploy await helper"
+    until [[ $(docker service ls -f name="$STACK_NAME"_"$SERVICE_NAME" --format "{{.Replicas}}") == *"$SERVICE_INSTANCES/$SERVICE_INSTANCES"* ]]; do
+        config::timeout_check "$start_time" "$SERVICE_NAME to start" "$exit_time" "$warning_time"
+        sleep 1
+    done
+
+    start_time=$(date +%s) # Reintialize for the second loop
+    local await_helper_state
+    await_helper_state=$(docker service ps "$STACK_NAME"_await-helper --format "{{.CurrentState}}")
+    until [[ $await_helper_state == *"Complete"* ]]; do
+        config::timeout_check "$start_time" "$SERVICE_NAME status check" "$exit_time" "$warning_time"
+        sleep 1
+
+        await_helper_state=$(docker service ps "$STACK_NAME"_await-helper --format "{{.CurrentState}}")
+        if [[ $await_helper_state == *"Failed"* ]] || [[ $await_helper_state == *"Rejected"* ]]; then
+            log error "Fatal: Received error when trying to verify state of $SERVICE_NAME. Error:
+       $(docker service ps "$STACK_NAME"_await-helper --no-trunc --format '{{.Error}}')"
+            exit 1
+        fi
+    done
+
+    try "docker service rm "$STACK_NAME"_await-helper" catch "Failed to remove await-helper"
+}
+
+# A function which removes a config importing service on successful completion, and exits with an error otherwise
+#
+# Arguments:
+# - $1 : stack name that the service falls under (eg. openhim)
+# - $2 : the name of the config importer
+# - $3 : (optional) the timeout time for the config importer to run, defaults to 300 seconds
+# - $4 : (optional) elapsed time to throw a warning, defaults to 60 seconds
+#
+config::remove_config_importer() {
+    local -r STACK_NAME="${1:?$(missing_param "remove_config_importer" "STACK_NAME")}"
+    local -r CONFIG_IMPORTER_SERVICE_NAME="${2:?$(missing_param "remove_config_importer" "CONFIG_IMPORTER_SERVICE_NAME")}"
+    local -r exit_time="${3:-}"
+    local -r warning_time="${4:-}"
+    local -r start_time=$(date +%s)
+
+    local config_importer_state
+
+    if [[ -z $(docker service ps "$STACK_NAME"_"$CONFIG_IMPORTER_SERVICE_NAME") ]]; then
+        log info "${STACK_NAME}_$CONFIG_IMPORTER_SERVICE_NAME service cannot be removed as it does not exist!"
+        exit 0
+    fi
+
+    config_importer_state=$(docker service ps "$STACK_NAME"_"$CONFIG_IMPORTER_SERVICE_NAME" --format "{{.CurrentState}}")
+    until [[ $config_importer_state == *"Complete"* ]]; do
+        config::timeout_check "$start_time" "$CONFIG_IMPORTER_SERVICE_NAME to run" "$exit_time" "$warning_time"
+        sleep 1
+
+        config_importer_state=$(docker service ps "$STACK_NAME"_"$CONFIG_IMPORTER_SERVICE_NAME" --format "{{.CurrentState}}")
+        if [[ $config_importer_state == *"Failed"* ]] || [[ $config_importer_state == *"Rejected"* ]]; then
+            log error "Fatal: $CONFIG_IMPORTER_SERVICE_NAME failed with error:
+       $(docker service ps ${STACK_NAME}_"$CONFIG_IMPORTER_SERVICE_NAME" --no-trunc --format '{{.Error}}')"
+            exit 1
+        fi
+    done
+
+    try "docker service rm "$STACK_NAME"_$CONFIG_IMPORTER_SERVICE_NAME" catch "Failed to remove config importer"
+}
+
+# Waits for the provided service to be removed
+#
+# Arguments:
+# - $1 : stack name that the service falls under (eg. openhim)
+# - $2 : service name (eg. analytics-datastore-elastic-search)
+#
+config::await_service_removed() {
+    local -r STACK_NAME="${1:?$(missing_param "await_service_removed", "STACK_NAME")}"
+    local -r SERVICE_NAME="${2:?$(missing_param "await_service_removed", "SERVICE_NAME")}"
+    local start_time=$(date +%s)
+
+    until [[ -z $(docker stack ps $STACK_NAME -qf name="${STACK_NAME}_${SERVICE_NAME}" 2>/dev/null) ]]; do
+        config::timeout_check "$start_time" "${SERVICE_NAME} to be removed"
+        sleep 1
+    done
+    log info "Service $SERVICE_NAME successfully removed"
+}
+
+# Generates configs for a service from a folder and adds them to a temp docker-compose file
+#
+# Arguments:
+# - $1 : service name (eg. data-mapper-logstash)
+# - $2 : target base (eg. /usr/share/logstash/)
+# - $3 : target folder path in absolute format (eg. "$PATH_TO_FILE"/pipeline)
+# - $4 : compose file path (eg. "$PATH_TO_FILE")
+#
+# Exports:
+# All exports are required for yq to process the values and are not intended for external use
+# - service_config_query
+# - config_target
+# - config_source
+# - config_query
+# - config_file
+# - config_label_name
+# - config_service_name
+#
+config::generate_service_configs() {
+    local -r SERVICE_NAME=${1:?$(missing_param "generate_service_configs" "SERVICE_NAME")}
+    local -r TARGET_BASE=${2:?$(missing_param "generate_service_configs" "TARGET_BASE")}
+    local -r TARGET_FOLDER_PATH=${3:?$(missing_param "generate_service_configs" "TARGET_FOLDER_PATH")}
+    local -r COMPOSE_PATH=${4:?$(missing_param "generate_service_configs" "COMPOSE_PATH")}
+    local -r LABEL_NAME=${5:?$(missing_param "generate_service_configs" "LABEL_NAME")}
+    local -r TARGET_FOLDER_NAME=$(basename "${TARGET_FOLDER_PATH}")
+    local count=0
+
+    try \
+        "touch ${COMPOSE_PATH}/docker-compose.tmp.yml" \
+        throw \
+        "Failed to create temp service config compose file"
+
+    find "${TARGET_FOLDER_PATH}" -maxdepth 10 -mindepth 1 -type f | while read -r file; do
+        file_name=${file/"${TARGET_FOLDER_PATH%/}"/}
+        file_name=${file_name:1}
+        file_hash=$(cksum "${file}" | awk '{print $1}')
+
+        # for these variables to be visible by yq they need to be exported
+        export service_config_query=".services.${SERVICE_NAME}.configs[${count}]"
+        export config_target="${TARGET_BASE%/}/${TARGET_FOLDER_NAME}/${file_name}"
+        export config_source="${SERVICE_NAME}-${file_hash}"
+
+        export config_query=".configs.${config_source}"
+        export config_file="./${TARGET_FOLDER_NAME}/${file_name}"
+        export config_label_name=$LABEL_NAME
+        export config_service_name=$SERVICE_NAME
+
+        yq -i '
+        .version = "3.9" |
+        eval(strenv(service_config_query)).target = env(config_target) |
+        eval(strenv(service_config_query)).source = strenv(config_source) |
+        eval(strenv(config_query)).file = strenv(config_file) |
+        eval(strenv(config_query)).name = strenv(config_source) |
+        eval(strenv(config_query)).labels.name = strenv(config_label_name) |
+        eval(strenv(config_query)).labels.service = strenv(config_service_name)
+        ' "${COMPOSE_PATH}/docker-compose.tmp.yml"
+
+        count=$((count + 1))
+    done
+}
+
+# Replaces all environment variables in a file with the environment variable value
+#
+# Arguments:
+# - $1 : the path to the file that you wish to substitute env vars into (eg. "${COMPOSE_FILE_PATH}"/config.ini)
+#
+config::substitute_env_vars() {
+    local -r FILE_PATH="${1:?$(missing_param "substitute_env_vars")}"
+    config_with_env=$(envsubst <"${FILE_PATH}")
+    echo "" >"${FILE_PATH}"
+    echo "$config_with_env" >>"${FILE_PATH}"
+}
+
+# Modify a variable to contain the necessary `--config-rm` and `--config-add` arguments to update a service's
+# configs based off newly created docker configs for a provided folder. The modified variable must then be
+# used in a `docker service update` command, like follows:
+# ```
+#   service_update_args=""
+#   config::update_service_configs service_update_args /usr/share/logstash/ "$PATH_TO_FILE"/pipeline cares
+#   docker service update $service_update_args instant_data-mapper-logstash
+# ```
+# Reference arguments:
+# - $1 : config update variable name (eg. service_update_args)
+#
+# Arguments:
+# - $2 : target base (eg. /usr/share/logstash/)
+# - $3 : target folder path in absolute format (eg. "$PATH_TO_FILE"/pipeline)
+# - $4 : config label name (eg. cares)
+#
+config::update_service_configs() {
+    declare -n REF_config_update_var="${1:?$(missing_param "update_service_configs" "REF_config_update_var")}"
+    local -r TARGET_BASE=${2:?$(missing_param "update_service_configs" "TARGET_BASE")}
+    local -r TARGET_FOLDER_PATH=${3:?$(missing_param "update_service_configs" "TARGET_FOLDER_PATH")}
+    local -r CONFIG_LABEL_NAME="${4:?$(missing_param "update_service_configs" "CONFIG_LABEL_NAME")}"
+    local config_rm_string=""
+    local config_add_string=""
+
+    files=$(find "${TARGET_FOLDER_PATH}" -maxdepth 10 -mindepth 1 -type f)
+
+    for file in $files; do
+        file_name=${file/"${TARGET_FOLDER_PATH%/}"/}
+        file_name=${file_name:1}
+        file_hash=$(md5sum "${file}" | awk '{print $1}')
+        config_file="${TARGET_FOLDER_PATH}/${file_name}"
+        config_target="${TARGET_BASE%/}/${file_name}"
+        config_name=$(basename "$file_name")-$file_hash
+        old_config_name=$(docker config inspect --format="{{.Spec.Name}}" "$(docker config ls -qf name="$(basename "$file_name")")" 2>/dev/null)
+
+        if [[ "$config_name" != "$old_config_name" ]]; then
+            if [[ -n $old_config_name ]]; then
+                config_rm_string+="--config-rm $old_config_name "
+            fi
+            config_add_string+="--config-add source=$config_name,target=$config_target "
+
+            try \
+                "docker config create --label name=$CONFIG_LABEL_NAME $config_name $config_file" \
+                catch \
+                "Failed to create config"
+        fi
+    done
+
+    REF_config_update_var+="$config_rm_string $config_add_string"
+}
+
+# Modify a variable to contain the necessary `--env-add` arguments to update a service's
+# environment specified in a .env file. The modified variable must then be
+# used in a `docker service update` command, like follows:
+# ```
+#   service_update_args=""
+#   config::env_var_add_from_file service_update_args "$PATH_TO_FILE"/.env.add
+#   docker service update $service_update_args instant_data-mapper-logstash
+# ```
+# Reference arguments:
+# - $1 : service update variable name (eg. service_update_args)
+#
+# Arguments:
+# - $2 : .env file (eg. "$PATH_TO_FILE"/.env.add)
+#
+config::env_var_add_from_file() {
+    declare -n REF_service_update_var="${1:?$(missing_param "env_var_add_from_file" "REF_service_update_var")}"
+    local -r ENV_FILE=${2:?$(missing_param "env_var_add_from_file" "ENV_FILE")}
+
+    if [[ ! -f $ENV_FILE ]]; then
+        log error "$ENV_FILE: No such file or directory. Exiting..."
+        return 1
+    fi
+
+    readarray -t env_vars <"$ENV_FILE"
+    for env_var in "${env_vars[@]}"; do
+        REF_service_update_var+=" --env-add $env_var"
+    done
+}
+
+# Modify a variable to contain the necessary `--env-add` arguments to update a service's
+# environment based on the provided env var. The modified variable must then be
+# used in a `docker service update` command, like follows:
+# ```
+#   service_update_args=""
+#   config::env_var_add service_update_args MY_ENV_VAR=my_value
+#   docker service update $service_update_args instant_data-mapper-logstash
+# ```
+# Reference arguments:
+# - $1 : service update variable name (eg. service_update_args)
+#
+# Arguments:
+# - $2 : env var (eg. MY_ENV_VAR=my_value)
+#
+config::env_var_add() {
+    declare -n REF_service_update_var="${1:?$(missing_param "env_var_add" "REF_service_update_var")}"
+    local -r ENV_VAR=${2:?$(missing_param "env_var_add" "ENV_VAR")}
+
+    REF_service_update_var+=" --env-add $ENV_VAR"
+}
+
+# Waits for the provided service to be reachable by checking logs
+#
+# Arguments:
+# $1 : service name (eg. analytics-datastore-elastic-search)
+# $2 : stack name that the service falls under (eg. openhim)
+# $3 : log string to be checked (eg. Starting)
+#
+config::await_service_reachable() {
+    local -r SERVICE_NAME=${1:?$(missing_param "await_service_reachable" "SERVICE_NAME")}
+    local -r STACK_NAME=${2:?$(missing_param "await_service_reachable" "STACK_NAME")}
+    local -r LOG_MESSAGE=${3:?$(missing_param "await_service_reachable" "LOG_MESSAGE")}
+    local -r start_time=$(date +%s)
+
+    until [[ $(docker service logs --tail all "${STACK_NAME}"_"${SERVICE_NAME}" 2>/dev/null | grep -c "${LOG_MESSAGE}") -gt 0 ]]; do
+        config::timeout_check "$start_time" "${STACK_NAME}_$SERVICE_NAME to be reachable"
+        sleep 1
+    done
+}

utils/docker-utils.sh

@@ -0,0 +1,574 @@
+#!/bin/bash
+#
+# Library name: docker
+# This is a library that contains functions to assist with docker actions
+
+. "$(pwd)/utils/config-utils.sh"
+. "$(pwd)/utils/log.sh"
+
+# Gets current status of the provided service
+#
+# Arguments:
+# - $1 : service name (eg. analytics-datastore-elastic-search)
+#
+docker::get_current_service_status() {
+    local -r SERVICE_NAME=${1:?$(missing_param "get_current_service_status")}
+    docker service ps "${SERVICE_NAME}" --format "{{.CurrentState}}" 2>/dev/null
+}
+
+# Gets unique errors from the provided service
+#
+# Arguments:
+# - $1 : service name (eg. analytics-datastore-elastic-search)
+#
+docker::get_service_unique_errors() {
+    local -r SERVICE_NAME=${1:?$(missing_param "get_service_unique_errors")}
+
+    # Get unique error messages using sort -u
+    docker service ps "${SERVICE_NAME}" --no-trunc --format '{{ .Error }}' 2>&1 | sort -u
+}
+
+# Waits for a container to be up
+#
+# Arguments:
+# - $1 : stack name that the service falls under (eg. elastic)
+# - $2 : service name (eg. analytics-datastore-elastic-search)
+#
+docker::await_container_startup() {
+    local -r STACK_NAME=${1:?$(missing_param "await_container_startup", "STACK_NAME")}
+    local -r SERVICE_NAME=${2:?$(missing_param "await_container_startup", "SERVICE_NAME")}
+
+    log info "Waiting for ${SERVICE_NAME} to start up..."
+    local start_time
+    start_time=$(date +%s)
+    until [[ -n $(docker service ls -qf name="${STACK_NAME}"_"${SERVICE_NAME}") ]]; do
+        config::timeout_check "${start_time}" "${SERVICE_NAME} to start"
+        sleep 1
+    done
+    overwrite "Waiting for ${SERVICE_NAME} to start up... Done"
+}
+
+# Waits for a container to be up
+#
+# Arguments:
+# - $1 : stack name that the service falls under (eg. elastic)
+# - $2 : service name (eg. analytics-datastore-elastic-search)
+# - $3 : service status (eg. running)
+#
+docker::await_service_status() {
+    local -r STACK_NAME=${1:?$(missing_param "await_service_status" "STACK_NAME")}
+    local -r SERVICE_NAME=${2:?$(missing_param "await_service_status" "SERVICE_NAME")}
+    local -r SERVICE_STATUS=${3:?$(missing_param "await_service_status" "SERVICE_STATUS")}
+    local -r start_time=$(date +%s)
+    local error_message=()
+
+    log info "Waiting for ${STACK_NAME}_${SERVICE_NAME} to be ${SERVICE_STATUS}..."
+    until [[ $(docker::get_current_service_status ${STACK_NAME}_${SERVICE_NAME}) == *"${SERVICE_STATUS}"* ]]; do
+        config::timeout_check "${start_time}" "${STACK_NAME}_${SERVICE_NAME} to start"
+        sleep 1
+
+        # Get unique error messages using sort -u
+        new_error_message=($(docker::get_service_unique_errors ${STACK_NAME}_$SERVICE_NAME))
+        if [[ -n ${new_error_message[*]} ]]; then
+            # To prevent logging the same error
+            if [[ "${error_message[*]}" != "${new_error_message[*]}" ]]; then
+                error_message=(${new_error_message[*]})
+                log error "Deploy error in service ${STACK_NAME}_$SERVICE_NAME: ${error_message[*]}"
+            fi
+
+            # To exit in case the error is not having the image
+            if [[ "${new_error_message[*]}" == *"No such image"* ]]; then
+                log error "Do you have access to pull the image?"
+                exit 124
+            fi
+        fi
+    done
+    overwrite "Waiting for ${STACK_NAME}_${SERVICE_NAME} to be ${SERVICE_STATUS}... Done"
+}
+
+# Waits for a container to be destroyed
+#
+# Arguments:
+# - $1 : stack name that the service container falls under (eg. elastic)
+# - $2 : service name (eg. analytics-datastore-elastic-search)
+#
+docker::await_container_destroy() {
+    local -r STACK_NAME=${1:?$(missing_param "await_container_destroy", "STACK_NAME")}
+    local -r SERVICE_NAME=${2:?$(missing_param "await_container_destroy", "SERVICE_NAME")}
+
+    log info "Waiting for ${STACK_NAME}_${SERVICE_NAME} to be destroyed..."
+    local start_time
+    start_time=$(date +%s)
+    until [[ -z $(docker ps -qlf name="${STACK_NAME}_${SERVICE_NAME}") ]]; do
+        config::timeout_check "${start_time}" "${SERVICE_NAME} to be destroyed"
+        sleep 1
+    done
+    overwrite "Waiting for ${STACK_NAME}_${SERVICE_NAME} to be destroyed... Done"
+}
+
+# Waits for a service to be destroyed
+#
+# Arguments:
+# - $1 : service name (eg. analytics-datastore-elastic-search)
+# - $2 : stack name that the service falls under (eg. elastic)
+#
+docker::await_service_destroy() {
+    local -r SERVICE_NAME=${1:?$(missing_param "await_service_destroy", "SERVICE_NAME")}
+    local -r STACK_NAME=${2:?$(missing_param "await_service_destroy", "STACK_NAME")}
+    local start_time
+    start_time=$(date +%s)
+
+    while docker service ls | grep -q "\s${STACK_NAME}_${SERVICE_NAME}\s"; do
+        config::timeout_check "${start_time}" "${SERVICE_NAME} to be destroyed"
+        sleep 1
+    done
+}
+
+# Removes services containers then the service itself
+# This was created to aid in removing volumes,
+# since volumes being removed were still attached to some lingering containers after container remove
+#
+# NB: Global services can't be scale down
+#
+# Arguments:
+# - $1 : stack name that the services fall under (eg. elasticsearch)
+# - $@ : service names list (eg. analytics-datastore-elastic-search)
+#
+docker::service_destroy() {
+    local -r STACK_NAME=${1:?$(missing_param "service_destroy", "STACK_NAME")}
+    shift
+
+    if [[ -z "$*" ]]; then
+        log error "$(missing_param "service_destroy", "[SERVICE_NAMES]")"
+        exit 1
+    fi
+
+    for service_name in "$@"; do
+        local service="${STACK_NAME}"_$service_name
+        log info "Waiting for service $service to be removed ... "
+        if [[ -n $(docker service ls -qf name=$service) ]]; then
+            if [[ $(docker service ls --format "{{.Mode}}" -f name=$service) != "global" ]]; then
+                try "docker service scale $service=0" catch "Failed to scale down ${service_name}"
+            fi
+            try "docker service rm $service" catch "Failed to remove service ${service_name}"
+            docker::await_service_destroy "$service_name" "$STACK_NAME"
+        fi
+        overwrite "Waiting for service $service_name to be removed ... Done"
+    done
+}
+
+# Removes the stack and awaits for each service in the stack to be removed
+#
+# Arguments:
+# - $1 : stack name to be removed
+#
+docker::stack_destroy() {
+    local -r STACK_NAME=${1:?$(missing_param "stack_destroy")}
+    log info "Waiting for stack $STACK_NAME to be removed ..."
+    try "docker stack rm \
+        $STACK_NAME" \
+        throw \
+        "Failed to remove $STACK_NAME"
+
+    local start_time=$(date +%s)
+    while [[ -n "$(docker stack ps $STACK_NAME 2>/dev/null)" ]] ; do
+        config::timeout_check "${start_time}" "${STACK_NAME} to be destroyed"
+        sleep 1
+    done
+
+    overwrite "Waiting for stack $STACK_NAME to be removed ... Done"
+
+    log info "Pruning networks ... "
+    try "docker network prune -f" catch "Failed to prune networks"
+    overwrite "Pruning networks ... done"
+
+    docker::prune_volumes
+}
+
+# Loops through all current services and builds up a dictionary of volume names currently in use
+# (this also considers downed services, as you don't want to prune volumes for downed services)
+# It then loops through all volumes and removes any that do not have a service definition attached to it
+#
+docker::prune_volumes() {
+    # Create an associative array to act as the dictionary to hold service volume names
+    # Need to add instant, which the gocli uses but is not defined as a service
+    declare -A referenced_volumes=(['instant']=true)
+
+    log info "Pruning volumes ... "
+
+    for service in $(docker service ls -q); do
+        for volume in $(docker service inspect $service --format '{{range .Spec.TaskTemplate.ContainerSpec.Mounts}}{{println .Source}}{{end}}'); do
+            referenced_volumes[$volume]=true
+        done
+    done
+
+    for volume in $(docker volume ls --format {{.Name}}); do
+        # Check to see if the key (which is the volume name) exists
+        if [[ -v referenced_volumes[$volume] ]]; then
+            continue
+        fi
+
+        # Ignore volumes attached to a container but are not apart of a service definition
+        local start_time=$(date +%s)
+        local should_ignore=true
+        if [[ -n $(docker ps -a -q --filter volume=$volume) ]]; then
+            local timeDiff=$(($(date +%s) - $start_time))
+            until [[ $timeDiff -ge 10 ]]; do
+                timeDiff=$(($(date +%s) - $start_time))
+                if [[ -n $(docker ps -a -q --filter volume=$volume) ]]; then 
+                    sleep 1
+                else
+                    should_ignore=false
+                fi
+            done
+            if $should_ignore; then
+                continue
+            fi
+        fi
+
+        log info "Waiting for volume $volume to be removed..."
+        start_time=$(date +%s)
+        until [[ -z "$(docker volume ls -q --filter name=^$volume$ 2>/dev/null)" ]]; do
+            docker volume rm $volume >/dev/null 2>&1
+            config::timeout_check "${start_time}" "$volume to be removed" "60" "10"
+            sleep 1
+        done
+        overwrite "Waiting for volume $volume to be removed... Done"
+    done
+
+    overwrite "Pruning volumes ... done"
+}
+
+# Prunes configs based on a label
+#
+# Arguments:
+# - $@ : configs label list (eg. logstash)
+#
+docker::prune_configs() {
+    if [[ -z "$*" ]]; then
+        log error "$(missing_param "prune_configs", "[CONFIG_LABELS]")"
+        exit 1
+    fi
+
+    for config_name in "$@"; do
+        # shellcheck disable=SC2046
+        if [[ -n $(docker config ls -qf label=name="$config_name") ]]; then
+            log info "Waiting for configs to be removed..."
+
+            docker config rm $(docker config ls -qf label=name="$config_name") &>/dev/null
+
+            overwrite "Waiting for configs to be removed... Done"
+        fi
+    done
+}
+
+# Checks if the image exists, if not it will pull it from docker
+#
+# Arguments:
+# - $@ : images list (eg. bitnami/kafka:3.3.1)
+#
+docker::check_images_existence() {
+    if [[ -z "$*" ]]; then
+        log error "$(missing_param "check_images_existence", "[IMAGES]")"
+        exit 1
+    fi
+
+    local timeout_pull_image
+    timeout_pull_image=300
+    for image_name in "$@"; do
+        image_name=$(eval echo "$image_name")
+        if [[ -z $(docker image inspect "$image_name" --format "{{.Id}}" 2>/dev/null) ]]; then
+            log info "The image $image_name is not found, Pulling from docker..."
+            try \
+                "timeout $timeout_pull_image docker pull $image_name 1>/dev/null" \
+                throw \
+                "An error occured while pulling the image $image_name"
+
+            overwrite "The image $image_name is not found, Pulling from docker... Done"
+        fi
+    done
+}
+
+# Deploys a service
+# It will pull images if they don't exist in the local docker hub registry
+# It will set config digests (in case a config is defined in the compose file)
+# It will remove stale configs
+#
+# Arguments:
+# - $1 : docker stack name to group the service under
+# - $2 : docker compose path (eg. /instant/monitoring)
+# - $3 : docker compose file (eg. docker-compose.yml or docker-compose.cluster.yml)
+# - $@ : (optional) list of docker compose files (eg. docker-compose.cluster.yml docker-compose.dev.yml)
+# - $@:4:n : (optional) a marker 'defer-sanity' used to defer deploy::sanity to the caller, can appear anywhere in the optional list 
+#
+docker::deploy_service() {
+    local -r STACK_NAME="${1:?$(missing_param "deploy_service" "STACK_NAME")}"
+    local -r DOCKER_COMPOSE_PATH="${2:?$(missing_param "deploy_service" "DOCKER_COMPOSE_PATH")}"
+    local -r DOCKER_COMPOSE_FILE="${3:?$(missing_param "deploy_service" "DOCKER_COMPOSE_FILE")}"
+    local docker_compose_param=""
+
+    # Check for the existance of the images
+    local -r images=($(yq '.services."*".image' "${DOCKER_COMPOSE_PATH}/$DOCKER_COMPOSE_FILE"))
+    if [[ "${images[*]}" != "null" ]]; then
+        docker::check_images_existence "${images[@]}"
+    fi
+
+    local defer_sanity=false
+    for optional_config in "${@:4}"; do
+        if [[ -n $optional_config ]]; then
+            if [[ $optional_config == "defer-sanity" ]]; then
+                defer_sanity=true
+            else
+                docker_compose_param="$docker_compose_param -c ${DOCKER_COMPOSE_PATH}/$optional_config"
+            fi
+        fi
+    done
+
+    docker::prepare_config_digests "$DOCKER_COMPOSE_PATH/$DOCKER_COMPOSE_FILE" ${docker_compose_param//-c /}
+    docker::ensure_external_networks_existence "$DOCKER_COMPOSE_PATH/$DOCKER_COMPOSE_FILE" ${docker_compose_param//-c /}
+
+    try "docker stack deploy \
+        -c ${DOCKER_COMPOSE_PATH}/$DOCKER_COMPOSE_FILE \
+        $docker_compose_param \
+        --with-registry-auth \
+        ${STACK_NAME}" \
+        throw \
+        "Wrong configuration in ${DOCKER_COMPOSE_PATH}/$DOCKER_COMPOSE_FILE or in the other supplied compose files"
+
+    docker::cleanup_stale_configs "$DOCKER_COMPOSE_PATH/$DOCKER_COMPOSE_FILE" ${docker_compose_param//-c /}
+
+    if [[ $defer_sanity != true ]]; then
+        docker::deploy_sanity "$STACK_NAME" "$DOCKER_COMPOSE_PATH/$DOCKER_COMPOSE_FILE" ${docker_compose_param//-c /}
+    fi
+}
+
+# Deploys a config importer
+# Sets the config digests, deploys the config importer, removes it and removes the stale configs
+#
+# Arguments:
+# - $1 : stack name that the service falls under
+# - $2 : docker compose path (eg. /instant/monitoring/importer/docker-compose.config.yml)
+# - $3 : services name (eg. clickhouse-config-importer)
+# - $4 : config label (eg. clickhouse kibana)
+#
+docker::deploy_config_importer() {
+    local -r STACK_NAME="${1:?$(missing_param "deploy_config_importer" "STACK_NAME")}"
+    local -r CONFIG_COMPOSE_PATH="${2:?$(missing_param "deploy_config_importer" "CONFIG_COMPOSE_PATH")}"
+    local -r SERVICE_NAME="${3:?$(missing_param "deploy_config_importer" "SERVICE_NAME")}"
+    local -r CONFIG_LABEL="${4:?$(missing_param "deploy_config_importer" "CONFIG_LABEL")}"
+
+    log info "Waiting for config importer $SERVICE_NAME to start ..."
+    (
+        if [[ ! -f "$CONFIG_COMPOSE_PATH" ]]; then
+            log error "No such file: $CONFIG_COMPOSE_PATH"
+            exit 1
+        fi
+
+        config::set_config_digests "$CONFIG_COMPOSE_PATH"
+
+        try \
+            "docker stack deploy -c ${CONFIG_COMPOSE_PATH} ${STACK_NAME}" \
+            throw \
+            "Wrong configuration in $CONFIG_COMPOSE_PATH"
+
+        log info "Waiting to give core config importer time to run before cleaning up service"
+
+        config::remove_config_importer "$STACK_NAME" "$SERVICE_NAME"
+        config::await_service_removed "$STACK_NAME" "$SERVICE_NAME"
+
+        log info "Removing stale configs..."
+        config::remove_stale_service_configs "$CONFIG_COMPOSE_PATH" "$CONFIG_LABEL"
+        overwrite "Removing stale configs... Done"
+    ) || {
+        log error "Failed to deploy the config importer: $SERVICE_NAME"
+        exit 1
+    }
+}
+
+# Checks for errors when deploying
+#
+# Arguments:
+# - $1 : stack name that the services falls under
+# - $@ : fully qualified path to the compose file(s) with service definitions (eg. /instant/interoperability-layer-openhim/docker-compose.yml)
+#
+docker::deploy_sanity() {
+    local -r STACK_NAME="${1:?$(missing_param "deploy_sanity" "STACK_NAME")}"
+    # shift off the stack name to get the subset of services to check  
+    shift
+
+    if [[ -z "$*" ]]; then
+        log error "$(missing_param "deploy_sanity" "[COMPOSE_FILES]")"
+        exit 1
+    fi
+
+    local services=()
+    for compose_file in "$@"; do
+    # yq 'keys' returns:"- foo - bar" if you have yml with a foo: and bar: service definition
+    # which is why we remove the "- " before looping
+    # it will also return '#' as a key if you have a comment, so we clean them with ' ... comments="" ' first
+        local compose_services=$(yq '... comments="" | .services | keys' $compose_file)
+        compose_services=${compose_services//- /}
+        for service in ${compose_services[@]}; do
+            # only append unique service to services
+            if [[ ! ${services[*]} =~ $service ]]; then
+                services+=($service)
+            fi
+        done
+    done
+
+    for service_name in ${services[@]}; do
+        docker::await_service_status $STACK_NAME "$service_name" "Running"
+    done
+}
+
+# Scales services to the passed in replica count
+#
+# Arguments:
+# - $1 : stack name that the services falls under
+# - $2 : replicas number (eg. 0 (to scale down) or 1 (to scale up) or 2 (to scale up more))
+#
+docker::scale_services() {
+    local -r STACK_NAME="${1:?$(missing_param "scale_services" "STACK_NAME")}"
+    local -r REPLICAS="${2:?$(missing_param "scale_services" "REPLICAS")}"
+    local services=($(docker stack services $STACK_NAME | awk '{print $2}' | tail -n +2))
+    for service_name in "${services[@]}"; do
+        log info "Waiting for $service_name to scale to $REPLICAS ..."
+        try \
+            "docker service scale $service_name=$REPLICAS" \
+            catch \
+            "Failed to scale $service_name to $REPLICAS"
+        overwrite "Waiting for $service_name to scale to $REPLICAS ... Done"
+    done
+}
+
+# Checks if the external networks exist and tries to create them if they do not
+#
+# Arguments:
+# - $@ : fully qualified path to the docker compose file(s) with the possible network definitions (eg. /instant/interoperability-layer-openhim/docker-compose.yml)
+#
+docker::ensure_external_networks_existence() {
+    if [[ -z "$*" ]]; then
+        log error "$(missing_param "ensure_external_networks_existence", "[COMPOSE_FILES]")"
+        exit 1
+    fi
+
+    for compose_file in "$@"; do
+        if [[ $(yq '.networks' $compose_file) == "null" ]]; then
+            continue
+        fi
+        
+        local network_keys=$(yq '... comments="" | .networks | keys' $compose_file)
+        local networks=(${network_keys//- /})
+        if [[ "${networks[*]}" != "null" ]]; then
+            for network_name in "${networks[@]}"; do
+                # check if the property external is both present and set to true for the current network
+                # then pull the necessary properties to create the network
+                if [[ $(name=$network_name yq '.networks.[env(name)] | select(has("external")) | .external' $compose_file) == true ]]; then
+                    local name=$(name=$network_name yq '.networks.[env(name)] | .name' $compose_file)
+                    if [[ $name == "null" ]]; then
+                        name=$network_name
+                    fi
+                    
+                    # network with the name already exists so no need to create it
+                    if docker network ls | awk '{print $2}' | grep -q -w "$name"; then
+                        continue
+                    fi
+
+                    local driver=$(name=$network_name yq '.networks.[env(name)] | .driver' $compose_file)
+                    if [[ $driver == "null" ]]; then
+                        driver="overlay"
+                    fi
+
+                    local attachable=""
+                    if [[ $(name=$network_name yq '.networks.[env(name)] | .attachable' $compose_file) == true ]]; then
+                        attachable="--attachable"
+                    fi
+
+                    log info "Waiting to create external network $name ..."
+                    try \
+                        "docker network create --scope=swarm \
+                        -d $driver \
+                        $attachable \
+                        $name" \
+                        throw \
+                        "Failed to create network $name"
+                    overwrite "Waiting to create external network $name ... Done"
+                fi
+            done
+        fi
+    done
+}
+
+# Joins a service to a network by updating the service spec to include the network.
+#
+# Note: Do not remove if not used in the Platform as this is mainly used by
+# custom packages that cannot overwrite the docker compose file to add the network connection required.
+#
+# Arguments:
+# - $1 : service name that needs to join the network (eg. analytics-datastore-elastic-search)
+# - $2 : network name to join (eg. elastic_public)
+#
+docker::join_network() {
+    local -r SERVICE_NAME="${1:?$(missing_param "join_network" "SERVICE_NAME")}"
+    local -r NETWORK_NAME="${2:?$(missing_param "join_network" "NETWORK_NAME")}"
+    local network_id
+    network_id=$(docker network ls --filter name="$NETWORK_NAME$" --format '{{.ID}}')
+    if [[ -n "${network_id}" ]]; then
+        if docker service inspect "$SERVICE_NAME" --format "{{.Spec.TaskTemplate.Networks}}" | grep -q "$network_id"; then
+            log info "Service $SERVICE_NAME is already connected to network $NETWORK_NAME."
+        else
+            log info "Waiting to join $SERVICE_NAME to external network $NETWORK_NAME ..."
+            try \
+                "docker service update  \
+              --network-add name=$NETWORK_NAME \
+              $SERVICE_NAME" \
+                throw \
+                "Failed to join network $NETWORK_NAME"
+        fi
+    else
+        log error "Network $NETWORK_NAME does not exist, cannot join $SERVICE_NAME to it ..."
+    fi
+}
+
+# Checks the compose file(s) passed in for the existance of a config.file definition to pass to config::set_config_digests
+#
+# Arguments:
+# - $@ : fully qualified path to the compose file(s) to check (eg. /instant/interoperability-layer-openhim/docker-compose.yml)
+#
+docker::prepare_config_digests()
+{
+    if [[ -z "$*" ]]; then
+        log error "$(missing_param "prepare_config_digests", "[COMPOSE_FILES]")"
+        exit 1
+    fi
+
+    for compose_file in "$@"; do
+        local files=($(yq '.configs."*.*".file' "$compose_file"))
+        if [[ "${files[*]}" != "null" ]]; then
+            config::set_config_digests "$compose_file"
+        fi
+    done
+}
+
+# Checks the compose file(s) passed in for the existance of a config.lables.name definition to pass to config::remove_stale_service_configs
+# To ensure that the service has the most up to date config digest
+#
+# Arguments:
+# - $@ : fully qualified path to the compose file(s) to check (eg. /instant/interoperability-layer-openhim/docker-compose.yml)
+#
+docker::cleanup_stale_configs()
+{
+    if [[ -z "$*" ]]; then
+        log error "$(missing_param "cleanup_stale_configs", "[COMPOSE_FILES]")"
+        exit 1
+    fi
+
+    for compose_file in "$@"; do
+        local label_names=($(yq '.configs."*.*".labels.name' "$compose_file" | sort -u))
+        if [[ "${label_names[*]}" != "null" ]]; then
+            for label_name in "${label_names[@]}"; do
+                config::remove_stale_service_configs "$compose_file" "${label_name}"
+            done
+        fi
+    done
+}

utils/log.sh

@@ -0,0 +1,228 @@
+#!/bin/bash
+
+set -uo pipefail
+
+# Global constants
+PREV_LINE="\e[1A" # moves cursor to previous line
+CLEAR_LINE="\e[K" # clears the current line the cursor is on
+CLEAR_PREV_LINE="${PREV_LINE}${PREV_LINE}${CLEAR_LINE}"
+
+# Defaults
+DEBUG="${DEBUG:-0}"
+BASHLOG_FILE="${BASHLOG_FILE:-0}"
+
+root_log_file_path="/tmp/logs"
+LOG_FILE_PATH="${root_log_file_path}/${BASHLOG_FILE_PATH:-platform.log}"
+
+function _log_exception() {
+    (
+        BASHLOG_FILE=0
+        BASHLOG_JSON=0
+        BASHLOG_SYSLOG=0
+
+        log 'error' "Logging Exception: ${@}"
+    )
+}
+
+function log() {
+    local date_format="${BASHLOG_DATE_FORMAT:-+%F %T}"
+    local date="$(date "${date_format}")"
+    local date_s="$(date "+%s")"
+
+    local file="${BASHLOG_FILE:-0}"
+    local file_path="${LOG_FILE_PATH:-/tmp/$(basename "${0}").log}"
+
+    local json="${BASHLOG_JSON:-0}"
+    local json_path="${BASHLOG_JSON_PATH:-/tmp/$(basename "${0}").log.json}"
+
+    local syslog="${BASHLOG_SYSLOG:-0}"
+    local tag="${BASHLOG_SYSLOG_TAG:-$(basename "${0}")}"
+    local facility="${BASHLOG_SYSLOG_FACILITY:-local0}"
+    local pid="${$}"
+
+    local level="${1}"
+    local upper="$(echo "${level}" | awk '{print toupper($0)}')"
+    local debug_level="${DEBUG:-0}"
+
+    shift 1
+
+    local line="${@}"
+
+    # RFC 5424
+    #
+    # Numerical         Severity
+    #   Code
+    #
+    #    0       Emergency: system is unusable
+    #    1       Alert: action must be taken immediately
+    #    2       Critical: critical conditions
+    #    3       Error: error conditions
+    #    4       Warning: warning conditions
+    #    5       Notice: normal but significant condition
+    #    6       Informational: informational messages
+    #    7       Debug: debug-level messages
+
+    local -A severities
+    severities['DEBUG']=7
+    severities['INFO']=6
+    severities['NOTICE']=5 # Unused
+    severities['WARN']=4
+    severities['ERROR']=3
+    severities['CRIT']=2  # Unused
+    severities['ALERT']=1 # Unused
+    severities['EMERG']=0 # Unused
+
+    local severity="${severities[${upper}]:-3}"
+
+    if [ "${debug_level}" -gt 0 ] || [ "${severity}" -lt 7 ]; then
+
+        if [ "${syslog}" -eq 1 ]; then
+            local syslog_line="${upper}: ${line}"
+
+            logger \
+                --id="${pid}" \
+                -t "${tag}" \
+                -p "${facility}.${severity}" \
+                "${syslog_line}" ||
+                _log_exception "logger --id=\"${pid}\" -t \"${tag}\" -p \"${facility}.${severity}\" \"${syslog_line}\""
+        fi
+
+        if [ "${file}" -eq 1 ]; then
+            clean_line="${line//\\e[1A/}"
+            clean_line="${clean_line//\\e[K/}"
+            local file_line="${date} [${upper}] ${clean_line}"
+            echo -e "${file_line}" >>"${file_path}" ||
+                _log_exception "echo -e \"${file_line}\" >> \"${file_path}\""
+        fi
+
+        if [ "${json}" -eq 1 ]; then
+            local json_line="$(printf '{"timestamp":"%s","level":"%s","message":"%s"}' "${date_s}" "${level}" "${line}")"
+            echo -e "${json_line}" >>"${json_path}" ||
+                _log_exception "echo -e \"${json_line}\" >> \"${json_path}\""
+        fi
+
+    fi
+
+    local -A colours
+    colours['DEBUG']='\033[34m'  # Blue
+    colours['INFO']='\033[32m'   # Green
+    colours['NOTICE']=''         # Unused
+    colours['WARN']='\033[33m'   # Yellow
+    colours['ERROR']='\033[31m'  # Red
+    colours['CRIT']=''           # Unused
+    colours['ALERT']=''          # Unused
+    colours['EMERG']=''          # Unused
+    colours['DEFAULT']='\033[0m' # Default
+
+    local -A emoticons
+    emoticons['DEBUG']='🔷'
+    emoticons['INFO']='❕'
+    emoticons['NOTICE']='💡'
+    emoticons['WARN']='🔶'
+    emoticons['ERROR']='❌'
+    emoticons['CRIT']='⛔'
+    emoticons['ALERT']='❗❗'
+    emoticons['EMERG']='🚨'
+    emoticons['DEFAULT']=''
+
+    local norm="${colours['DEFAULT']}"
+    local colour="${colours[${upper}]:-\033[31m}"
+
+    if [[ "${line}" == *"${CLEAR_PREV_LINE}"* ]]; then
+        # Append package name dynamically when override
+        line="${CLEAR_PREV_LINE}[$(dirname -- "$0" | sed -e 's/-/ /g' -e 's/\b\(.\)/\u\1/g')] ${line#*"$CLEAR_PREV_LINE"}"
+    else
+        line="[$(dirname -- "$0" | sed -e 's/-/ /g' -e 's/\b\(.\)/\u\1/g')] ${line}"
+    fi
+
+    local std_line="${colour} ${emoticons[${upper}]} ${line}${norm}"
+
+    # Standard Output (Pretty)
+    case "${level}" in
+    'default' | 'info' | 'warn')
+        echo -e "${std_line}"
+        ;;
+    'debug')
+        if [ "${debug_level}" -gt 0 ]; then
+            echo -e "${std_line}"
+        fi
+        ;;
+    'error')
+        echo -e "${std_line}" >&2
+        ;;
+    *)
+        log 'error' "Undefined log level trying to log: ${@}"
+        ;;
+    esac
+}
+
+# This is an option if you want to log every single command executed,
+# but it will significantly impact script performance and unit tests will fail
+if [[ $DEBUG -eq 1 ]]; then
+    declare -g prev_cmd="null"
+    declare -g this_cmd="null"
+
+    trap 'prev_cmd=$this_cmd; this_cmd=$BASH_COMMAND; log debug $this_cmd' DEBUG
+fi
+
+# A function that will return a message called when of parameter not provided
+#
+# Arguments:
+# - $1 : optional - function name missing the parameter
+# - $2 : optional - name of the parameter missing
+missing_param() {
+    local FUNC_NAME=${1:-""}
+    local ARG_NAME=${2:-""}
+
+    echo "FATAL: ${FUNC_NAME} parameter ${ARG_NAME} not provided"
+}
+
+# Overwrites the last echo'd command with what is provided
+#
+# Arguments:
+# - $1 : message (eg. "Setting passwords... Done")
+overwrite() {
+    local -r MESSAGE=${1:?$(missing_param "overwrite")}
+    if [ "${DEBUG}" -eq 1 ]; then
+        log info "${MESSAGE}"
+    else
+        log info "${CLEAR_PREV_LINE}${MESSAGE}"
+    fi
+}
+
+# Execute a command handle logging of the output
+#
+# Arguments:
+# - $1 : command (eg. "docker service rm elastic-search")
+# - $2 : throw or catch (eg. "throw", "catch")
+# - $3 : error message (eg. "Failed to remove elastic-search service")
+try() {
+    local -r COMMAND=${1:?$(missing_param "try" "COMMAND")}
+    local -r SHOULD_THROW=${2:-"throw"}
+    local -r ERROR_MESSAGE=${3:?$(missing_param "try" "ERROR_MESSAGE")}
+
+    if [ "${BASHLOG_FILE}" -eq 1 ]; then
+        if ! eval "$COMMAND" >>"$LOG_FILE_PATH" 2>&1; then
+            log error "$ERROR_MESSAGE"
+            if [[ "$SHOULD_THROW" == "throw" ]]; then
+                exit 1
+            fi
+        fi
+    else
+        if [ "${DEBUG}" -eq 1 ]; then
+            if ! eval "$COMMAND"; then
+                log error "$ERROR_MESSAGE"
+                if [[ "$SHOULD_THROW" == "throw" ]]; then
+                    exit 1
+                fi
+            fi
+        else
+            if ! eval "$COMMAND" 1>/dev/null; then
+                log error "$ERROR_MESSAGE"
+                if [[ "$SHOULD_THROW" == "throw" ]]; then
+                    exit 1
+                fi
+            fi
+        fi
+    fi
+}

volumes/nginix/nginx.conf

@@ -1,86 +0,0 @@
-worker_processes  1;
-user              nobody;
-
-events {
-  worker_connections  1024;
-  multi_accept        off;
-}
-
-http {
-  include       mime.types;
-  default_type  application/octet-stream;
-  sendfile      on;
-  tcp_nopush    on;
-  tcp_nodelay   on;
-
-  keepalive_timeout  65;
-
-  map $request_uri $csp_header {
-    default "default-src 'self' 'unsafe-inline' https://fonts.gstatic.com/ https://cdn.jsdelivr.net/; base-uri 'self'; font-src 'self' https://fonts.gstatic.com/; img-src 'self' data:; frame-ancestors 'self';";
-    "~^/openmrs/(?:admin|dictionary|module|patientDashboard.form)/" "default-src 'self' 'unsafe-inline'; script-src 'self' 'unsafe-inline' 'unsafe-eval'; base-uri 'self'; font-src 'self'; frame-ancestors 'self';";
-    "~^/openmrs/owa" "default-src 'self' 'unsafe-inline'; script-src 'self' 'unsafe-inline' 'unsafe-eval'; base-uri 'self'; font-src 'self' data:; img-src 'self' data:; frame-ancestors 'self';";
-  }
-
-  server {
-    listen       80;
-
-    add_header X-XSS-Protection "1; mode=block";
-    #dont add the Content-Security-Policy for local dev
-    #add_header Content-Security-Policy $csp_header;
-
-    proxy_set_header HOST $host;
-    proxy_set_header      X-Forwarded-Proto $scheme;
-    proxy_set_header      X-Real-IP $remote_addr;
-    proxy_set_header      X-Forwarded-For $proxy_add_x_forwarded_for;
-    # if serving this via HTTPS, the following is recommended
-    # proxy_cookie_flags    JSESSIONID secure samesite=strict;
-
-    gzip on;
-    gzip_vary on;
-    # 1 KiB
-    gzip_min_length 1024;
-    gzip_proxied any;
-    gzip_http_version 1.0;
-    gzip_types  font/eot
-                font/otf
-                font/ttf
-                image/svg+xml
-                text/css
-                text/javascript
-                text/plain
-                text/xml
-                application/atom+xml
-                application/geo+json
-                application/javascript
-                application/x-javascript
-                application/json
-                application/ld+json
-                application/fhir+json
-                application/fhir+xml
-                application/manifest+json
-                application/rdf+xml
-                application/rss+xml
-                application/xhtml+xml
-                application/xml;
-
-    # all redirects are relative to the gateway
-    absolute_redirect off;
-
-    location = /openmrs/spa {
-      return 301 /openmrs/spa/;
-    }
-
-    location /openmrs/spa/ {
-      proxy_pass http://openmrs3x-frontend/;
-      proxy_redirect http://$host/ /openmrs/spa/;
-    }
-
-    location /openmrs {
-      proxy_pass http://openmrs-server:8080;
-    }
-
-    location = / {
-      return 301 /openmrs/spa/;
-    }
-  }
-}

volumes/openhim/console.json

@@ -1,13 +0,0 @@
-{
-    "version": "1.10.0",
-    "minimumCoreVersion": "3.4.0",
-    "protocol": "https",
-    "host": "localhost",
-    "port": 8085,
-    "title": "Admin Console",
-    "footerTitle": "OpenHIM Administration Console",
-    "footerPoweredBy": "<a href='http://openhim.org/' target='_blank'>Powered by OpenHIM</a>",
-    "loginBanner": "",
-    "mediatorLastHeartbeatWarningSeconds": 60,
-    "mediatorLastHeartbeatDangerSeconds": 120
-  }

volumes/openmrs/dbdump/2_dump.sql

@@ -1,994 +0,0 @@
--- MySQL dump 10.13  Distrib 5.7.33, for Linux (x86_64)
---
--- Host: localhost    Database: liquibaserunner
--- ------------------------------------------------------
--- Server version	5.7.33-0ubuntu0.16.04.1
-
-/*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */;
-/*!40101 SET @OLD_CHARACTER_SET_RESULTS=@@CHARACTER_SET_RESULTS */;
-/*!40101 SET @OLD_COLLATION_CONNECTION=@@COLLATION_CONNECTION */;
-/*!40101 SET NAMES utf8 */;
-/*!40103 SET @OLD_TIME_ZONE=@@TIME_ZONE */;
-/*!40103 SET TIME_ZONE='+00:00' */;
-/*!40014 SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0 */;
-/*!40014 SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0 */;
-/*!40101 SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='NO_AUTO_VALUE_ON_ZERO' */;
-/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */;
-
---
--- Table structure for table `concept`
---
-
-DROP TABLE IF EXISTS `concept`;
-/*!40101 SET @saved_cs_client     = @@character_set_client */;
-/*!40101 SET character_set_client = utf8 */;
-CREATE TABLE `concept` (
-  `concept_id` int(11) NOT NULL AUTO_INCREMENT,
-  `retired` tinyint(1) NOT NULL DEFAULT '0',
-  `short_name` varchar(255) DEFAULT NULL,
-  `description` text,
-  `form_text` text,
-  `datatype_id` int(11) NOT NULL DEFAULT '0',
-  `class_id` int(11) NOT NULL DEFAULT '0',
-  `is_set` tinyint(1) NOT NULL DEFAULT '0',
-  `creator` int(11) NOT NULL DEFAULT '0',
-  `date_created` datetime NOT NULL DEFAULT '1000-01-01 00:00:00',
-  `version` varchar(50) DEFAULT NULL,
-  `changed_by` int(11) DEFAULT NULL,
-  `date_changed` datetime DEFAULT NULL,
-  `retired_by` int(11) DEFAULT NULL,
-  `date_retired` datetime DEFAULT NULL,
-  `retire_reason` varchar(255) DEFAULT NULL,
-  `uuid` char(38) NOT NULL,
-  PRIMARY KEY (`concept_id`),
-  UNIQUE KEY `concept_uuid_index` (`uuid`),
-  KEY `concept_classes` (`class_id`),
-  KEY `concept_creator` (`creator`),
-  KEY `concept_datatypes` (`datatype_id`),
-  KEY `user_who_changed_concept` (`changed_by`),
-  KEY `concept_code` (`version`),
-  KEY `concept_ndx` (`version`),
-  KEY `user_who_retired_concept` (`retired_by`),
-  CONSTRAINT `concept_classes` FOREIGN KEY (`class_id`) REFERENCES `concept_class` (`concept_class_id`),
-  CONSTRAINT `concept_creator` FOREIGN KEY (`creator`) REFERENCES `users` (`user_id`),
-  CONSTRAINT `concept_datatypes` FOREIGN KEY (`datatype_id`) REFERENCES `concept_datatype` (`concept_datatype_id`),
-  CONSTRAINT `user_who_changed_concept` FOREIGN KEY (`changed_by`) REFERENCES `users` (`user_id`),
-  CONSTRAINT `user_who_retired_concept` FOREIGN KEY (`retired_by`) REFERENCES `users` (`user_id`)
-) ENGINE=InnoDB AUTO_INCREMENT=167024 DEFAULT CHARSET=utf8;
-/*!40101 SET character_set_client = @saved_cs_client */;
-
---
--- Dumping data for table `concept`
---
-
-LOCK TABLES `concept` WRITE;
-/*!40000 ALTER TABLE `concept` DISABLE KEYS */;
-INSERT INTO `concept` VALUES (1,0,'','',NULL,4,4,0,1,'2004-01-01 00:00:00','',1,'2020-05-07 21:08:06',1,NULL,NULL,'1AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(2,0,'','',NULL,4,4,0,1,'2004-01-01 00:00:00','',1,'2016-08-09 10:11:28',1,NULL,NULL,'2AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(3,1,'','',NULL,4,4,0,1,'2004-01-01 00:00:00','',1,'2007-10-14 07:33:14',1,NULL,NULL,'3AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(4,0,'','',NULL,2,4,0,1,'2004-01-01 00:00:00','',1,'2020-11-02 22:21:25',1,NULL,NULL,'4AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(5,1,'','',NULL,4,4,0,1,'2004-01-01 00:00:00','',1,'2011-03-04 21:23:54',1,NULL,NULL,'5AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(6,1,'','',NULL,4,3,0,1,'2004-01-01 00:00:00','',1,'2005-02-17 21:21:09',1,NULL,NULL,'6AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(7,0,'','',NULL,4,4,0,1,'2004-01-01 00:00:00','',1,'2016-08-09 10:41:21',1,NULL,NULL,'7AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(8,0,'','',NULL,4,4,0,1,'2004-01-01 00:00:00','',1,'2016-08-09 10:45:28',1,NULL,NULL,'8AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(9,1,'','',NULL,1,1,0,1,'2004-01-01 00:00:00','',1,'2005-02-12 11:32:33',1,NULL,NULL,'9AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(10,0,'','',NULL,4,4,0,1,'2004-01-01 00:00:00','',1,'2020-05-01 00:20:35',1,NULL,NULL,'10AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(11,0,'','',NULL,4,4,0,1,'2004-01-01 00:00:00','',1,'2016-08-09 11:02:43',1,NULL,NULL,'11AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(12,0,'','',NULL,2,22,0,1,'2004-01-01 00:00:00','',1,'2020-12-13 22:18:32',1,NULL,NULL,'12AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(13,1,'','',NULL,4,3,0,1,'2004-01-01 00:00:00','',1,NULL,1,NULL,NULL,'13AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(14,1,'','',NULL,4,4,0,1,'2004-04-02 00:00:00','',1,'2012-09-28 17:43:51',1,NULL,NULL,'14AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(15,1,'','',NULL,4,4,0,1,'2004-04-02 00:00:00','',1,'2005-02-18 01:44:05',1,NULL,NULL,'15AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(16,1,'','',NULL,4,4,0,1,'2004-01-01 00:00:00','',1,'2007-10-14 07:33:14',1,NULL,NULL,'16AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(17,0,'','',NULL,4,3,0,1,'2004-01-01 00:00:00','',1,'2021-07-28 16:23:25',1,NULL,NULL,'17AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(18,1,'','',NULL,4,3,0,1,'2004-01-01 00:00:00','',1,'2005-02-18 00:21:24',1,NULL,NULL,'18AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(19,1,'','',NULL,4,3,0,1,'2004-01-01 00:00:00','',1,'2005-02-18 00:21:35',1,NULL,NULL,'19AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(20,1,'','',NULL,4,3,0,1,'2004-01-01 00:00:00','',1,'2005-02-18 00:21:52',1,NULL,NULL,'20AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(21,0,'HGB','',NULL,1,1,0,1,'2004-01-01 00:00:00','0.1',1,'2019-02-23 16:59:06',1,NULL,NULL,'21AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(22,0,'HEPA','',NULL,4,3,0,1,'2004-01-01 00:00:00','',1,'2021-10-31 01:15:22',1,NULL,NULL,'22AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(23,1,'','',NULL,4,3,0,1,'2004-01-01 00:00:00','',1,'2005-02-12 12:00:45',1,NULL,NULL,'23AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(24,1,'','',NULL,4,3,0,1,'2004-01-01 00:00:00','',1,'2005-02-12 12:01:12',1,NULL,NULL,'24AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(25,1,'','',NULL,4,3,0,1,'2004-01-01 00:00:00','',1,'2005-02-12 12:01:27',1,NULL,NULL,'25AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(26,1,'','',NULL,4,4,0,1,'2004-01-01 00:00:00','',1,'2007-10-14 07:33:14',1,NULL,NULL,'26AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(27,1,'','',NULL,4,4,0,1,'2004-01-01 00:00:00','',1,'2007-10-14 07:33:14',1,NULL,NULL,'27AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(28,0,'','',NULL,4,4,0,1,'2004-01-01 00:00:00','',1,'2016-08-10 15:23:24',1,NULL,NULL,'28AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(29,1,'','',NULL,4,4,0,1,'2004-01-01 00:00:00','',1,'2007-10-14 07:33:14',1,NULL,NULL,'29AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(30,1,'','',NULL,4,5,0,1,'2004-01-01 00:00:00','',1,'2005-02-16 16:59:50',1,NULL,NULL,'30AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'),(31,0,'','','',4,10,1,1,'2006-02-10 17:08:45','1.0',1,'2016-08-10 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-UNLOCK TABLES;
-
---
--- Table structure for table `concept_answer`
---
-
-DROP TABLE IF EXISTS `concept_answer`;
-/*!40101 SET @saved_cs_client     = @@character_set_client */;
-/*!40101 SET character_set_client = utf8 */;
-CREATE TABLE `concept_answer` (
-  `concept_answer_id` int(11) NOT NULL AUTO_INCREMENT,
-  `concept_id` int(11) NOT NULL DEFAULT '0',
-  `answer_concept` int(11) DEFAULT NULL,
-  `answer_drug` int(11) DEFAULT NULL,
-  `creator` int(11) NOT NULL DEFAULT '0',
-  `date_created` datetime NOT NULL DEFAULT '1000-01-01 00:00:00',
-  `uuid` char(38) NOT NULL,
-  `sort_weight` double DEFAULT NULL,
-  PRIMARY KEY (`concept_answer_id`),
-  UNIQUE KEY `concept_answer_uuid_index` (`uuid`),
-  KEY `answer_creator` (`creator`),
-  KEY `answer` (`answer_concept`),
-  KEY `answers_for_concept` (`concept_id`),
-  KEY `answer_answer_drug_fk` (`answer_drug`),
-  CONSTRAINT `answer` FOREIGN KEY (`answer_concept`) REFERENCES `concept` (`concept_id`),
-  CONSTRAINT `answer_answer_drug_fk` FOREIGN KEY (`answer_drug`) REFERENCES `drug` (`drug_id`),
-  CONSTRAINT `answer_creator` FOREIGN KEY (`creator`) REFERENCES `users` (`user_id`),
-  CONSTRAINT `answers_for_concept` FOREIGN KEY (`concept_id`) REFERENCES `concept` (`concept_id`)
-) ENGINE=InnoDB AUTO_INCREMENT=7857 DEFAULT CHARSET=utf8;
-/*!40101 SET character_set_client = @saved_cs_client */;
-
---
--- Dumping data for table `concept_answer`
---
-
-LOCK TABLES `concept_answer` WRITE;
-/*!40000 ALTER TABLE `concept_answer` DISABLE KEYS */;
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-  CONSTRAINT `user_who_created_description` FOREIGN KEY (`creator`) REFERENCES `users` (`user_id`)
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-INSERT INTO `concept_description` VALUES (1,1,'Anemia due to bleeding or a hemorrhagic process.','en',1,'2007-10-18 04:28:24',1,'2020-05-07 21:08:06','1FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(2,2,'Anemia, due to the destruction or dissolution of red blood cells, with subsequent release of hemoglobin.','en',1,'2004-01-01 00:00:00',1,'2016-08-09 10:11:28','2FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(3,3,'Anemia not due to other causes listed within the system.','en',1,'2004-01-01 00:00:00',1,NULL,'3FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(4,4,'An abrupt and/or progressive worsening of symptoms of shortness of breath, wheezing, chest tightness, or some combination of these with associated respiratory distress.','en',1,'2004-01-01 00:00:00',1,'2020-11-02 22:21:25','4FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5,5,'A chronic respiratory disease, arising from allergies or inflammation, that is characterized by sudden recurring attacks of labored breathing, chest constriction, and coughing.','en',1,'2004-01-01 00:00:00',1,NULL,'5FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(6,6,'subcutaneous immunization for TB; converts PPD to positive','en',1,'2004-01-01 00:00:00',1,NULL,'6FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(7,7,'Small, hard, pathological concretions, composed chiefly of cholesterol, calcium salts, and bile pigments, formed in the gallbladder or in a bile duct.','en',1,'2007-10-18 04:28:24',1,'2016-08-09 10:41:21','7FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(8,8,'Gallbladder or biliary duct problems not specified.','en',1,'2004-01-01 00:00:00',1,'2016-08-09 10:45:28','8FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(9,9,'serum glucose, elevated in diabetes','en',1,'2004-01-01 00:00:00',1,NULL,'9FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(10,10,'Lower respiratory infection of the bronchial tubes, acute.','en',1,'2004-01-01 00:00:00',1,'2020-05-01 00:20:35','10FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(11,11,'Lower respiratory infection of the bronchial tubes, recurrent.','en',1,'2004-01-01 00:00:00',1,'2016-08-09 11:02:43','11FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12,12,'An examination using irradiation for imaging the chest.','en',1,'2004-01-01 00:00:00',1,'2020-12-13 22:18:32','12FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(13,13,'methods for preventing pregnancy','en',1,'2004-01-01 00:00:00',1,NULL,'13FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(14,14,'Diarrhea due to amoebic infection.','en',1,'2004-04-02 00:00:00',1,'2012-09-28 17:43:51','14FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(15,15,'Diarrhea due to cholera.','en',1,'2004-04-02 00:00:00',1,NULL,'15FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(16,16,'Diarrhea due to an unspecified cause.','en',1,'2004-01-01 00:00:00',1,NULL,'16FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17,17,'Booster vaccination against diptheria and tetanus (IM) used in pediatric patients.','en',1,'2004-01-01 00:00:00',1,'2021-07-28 16:23:25','17FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(18,18,'first vaccination for diptheria, pertussis (whooping cough), and tetanus (IM)','en',1,'2004-01-01 00:00:00',1,NULL,'18FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(19,19,'second vaccination for diptheria, pertussis (whooping cough), and tetanus (IM)','en',1,'2004-01-01 00:00:00',1,NULL,'19FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(20,20,'third vaccination for diptheria, pertussis (whooping cough), and tetanus (IM)','en',1,'2004-01-01 00:00:00',1,NULL,'20FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(21,21,'The iron-containing respiratory pigment in red blood cells of vertebrates, consisting of about 6 percent heme and 94 percent globin.','en',1,'2004-01-01 00:00:00',1,'2019-02-23 16:59:06','21FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(22,22,'Vaccination against hepatitis A (IM).','en',1,'2004-01-01 00:00:00',1,'2021-10-31 01:15:22','22FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(23,22,'','fr',1,'2007-09-27 11:56:03',1,'2021-10-31 01:15:22','23FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(24,23,'first vaccination against hepatitis B (IM)','en',1,'2004-01-01 00:00:00',1,NULL,'24FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(25,24,'second vaccination against hepatitis B (IM)','en',1,'2004-01-01 00:00:00',1,NULL,'25FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(26,25,'third vaccination against hepatitis B (IM)','en',1,'2004-01-01 00:00:00',1,NULL,'26FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(27,26,'Liver infection with hepatitis A virus (\"infectious hepatitis\").','en',1,'2004-01-01 00:00:00',1,NULL,'27FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(28,27,'Liver infection with hepatitis B virus (\"serum hepatitis\").','en',1,'2004-01-01 00:00:00',1,NULL,'28FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(29,28,'Liver infection with hepatitic C virus.','en',1,'2007-10-18 04:28:24',1,'2016-08-10 15:23:24','29FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(30,29,'Liver infection with an unknown organism or unspecified non-infectious liver inflammation.','en',1,'2004-01-01 00:00:00',1,NULL,'30FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(31,30,'patient infected with the HIV virus','en',1,'2004-01-01 00:00:00',1,NULL,'31FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(32,31,'Services requesLine truncated
-INSERT INTO `concept_description` VALUES (5506,118809,'Abnormal passage communicating with the stomach.','en',1,'2007-10-18 04:28:24',1,NULL,'5506FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5507,118810,'Penetration of a peptic ulcer through the stomach wall. May be free, i.e., at a point where the stomach wall faces a real or potential space,, or confined, i.e., at a point where the stomach wall is defended by contiguous or adjacent structures, such as t','en',1,'2007-10-18 04:28:24',1,NULL,'5507FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5508,118817,'Penetration of a peptic ulcer through the stomach wall. May be free, i.e., at a point where the stomach wall faces a real or potential space,, or confined, i.e., at a point where the stomach wall is defended by contiguous or adjacent structures, such as t','en',1,'2007-10-18 04:28:24',1,NULL,'5508FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5509,118819,'A peptic ulcer situated in the duodenum. (Dorland, 28th ed)','en',1,'2007-10-18 04:28:24',1,NULL,'5509FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5510,118824,'A syndrome characterized by acute OPTIC NEURITIS in combination with acute MYELITIS, TRANSVERSE. Demyelinating and/or necrotizing lesions form in one or both optic nerves and in the spinal cord. The onset of optic neuritis and myelitis may be simultaneous or separated by several months. (J Neurol Neurosurg Psychiatry 1996 Apr;60(4):382-387)','en',1,'2007-10-18 04:28:24',1,NULL,'5510FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5511,118825,'An endemic disease that is characterized by the development of single or multiple localized lesions on exposed areas of skin that typically ulcerate. The disease has been divided into Old and New World forms. Old World leishmaniasis is separated into three distinct types according to epidemiology and clinical manifestations and is caused by species of the L. tropica and L. aethiopica complexes as well as by species of the L. major genus. New World leishmaniasis, also called American leishmaniasis, occurs in South and Central America and is caused by species of the L. mexicana or L. braziliensis complexes.','en',1,'2007-10-18 04:28:24',1,NULL,'5511FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5513,118829,'Psychotic organic mental disorders resulting from the toxic effect of drugs and chemicals or other harmful substance.','en',1,'2007-10-18 04:28:24',1,'2012-06-25 22:08:23','5513FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5514,118830,'Psychotic organic mental disorders resulting from the toxic effect of drugs and chemicals or other harmful substance.','en',1,'2007-10-18 04:28:24',1,'2013-05-25 22:53:19','5514FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5516,118855,'Illegitimate use of drugs for a desired effect in humans or animals. Not specified whether use is episodic, chronic, or in remission.','en',1,'2007-10-18 04:28:24',1,'2020-04-23 18:17:34','5516FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5517,118862,'Inflammatory complications of colonic diverticulosis in which diverticula may undergo perforation with abscess formation.','en',1,'2007-10-18 04:28:24',1,NULL,'5517FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5518,118867,'A syndrome characterized by severe burning pain in an extremity accompanied by sudomotor, vasomotor, and trophic changes in bone without an associated specific nerve injury. This condition is most often precipitated by trauma to soft tissue or nerve complexes. The skin over the affected region is usually erythematous and demonstrates hypersensitivity to tactile stimuli and erythema. (Adams et al., Principles of Neurology, 6th ed, p1360; Pain 1995 Oct;63(1):127-33)','en',1,'2007-10-18 04:28:24',1,NULL,'5518FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5519,118868,'Reduction of bone mass without alteration in the composition of bone, leading to fractures. Primary osteoporosis can be of two major types:  postmenopausal osteoporosis (OSTEOPOROSIS, POSTMENOPAUSAL) and age-related or senile osteoporosis.','en',1,'2007-10-18 04:28:24',1,NULL,'5519FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5520,118869,'A syndrome characterized by severe burning pain in an extremity accompanied by sudomotor, vasomotor, and trophic changes in bone without an associated specific nerve injury. This condition is most often precipitated by trauma to soft tissue or nerve complexes. The skin over the affected region is usually erythematous and demonstrates hypersensitivity to tactile stimuli and erythema. (Adams et al., Principles of Neurology, 6th ed, p1360; Pain 1995 Oct;63(1):127-33)','en',1,'2007-10-18 04:28:24',1,NULL,'5520FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5522,118872,'Disorders of the special senses (i.e., vision, hearing, taste, and smell) or somatosensory system (i.e., afferent components of the peripheral nervous system).','en',1,'2007-10-18 04:28:24',1,NULL,'5522FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(5524,118876,'Organic mental disorders in which there is impairment of the ability to maintain awareness of self and environment and to respond to environmental stimuli. Dysfunction of the cerebral hemispheres or brain stem RELine truncated
-INSERT INTO `concept_description` VALUES (9341,130795,'A progressive, degenerative neurologic disease characterized by a TREMOR that is maximal at rest, retropulsion (i.e. a tendency to fall backwards), rigidity, stooped posture, slowness of voluntary movements, and a masklike facial expression. Pathologic features include loss of melanin containing neurons in the substantia nigra and other pigmented nuclei of the brainstem. LEWY BODIES are present in the substantia nigra and locus coeruleus but may also be found in a related condition (LEWY BODY DISEASE, DIFFUSE) characterized by dementia in combination with varying degrees of parkinsonism. (Adams et al., Principles of Neurology, 6th ed, p1059, pp1067-75)','en',1,'2007-10-18 04:28:24',1,'2012-06-14 00:10:17','9341FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(9342,130796,'Conditions which feature clinical manifestations resembling primary Parkinson disease that are caused by a known or suspected condition. Examples include parkinsonism caused by vascular injury, drugs, trauma, toxin exposure, neoplasms, infections and degenerative or hereditary conditions. Clinical features may include bradykinesia, rigidity, parkinsonian gait, and masked facies. In general, tremor is less prominent in secondary parkinsonism than in the primary form. (From Joynt, Clinical Neurology, 1998, Ch38, pp39-42)','en',1,'2007-10-18 04:28:24',1,NULL,'9342FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(9343,130798,'Conditions which feature clinical manifestations resembling primary Parkinson disease that are caused by a known or suspected condition. Examples include parkinsonism caused by vascular injury, drugs, trauma, toxin exposure, neoplasms, infections and degenerative or hereditary conditions. Clinical features may include bradykinesia, rigidity, parkinsonian gait, and masked facies. In general, tremor is less prominent in secondary parkinsonism than in the primary form. (From Joynt, Clinical Neurology, 1998, Ch38, pp39-42)','en',1,'2007-10-18 04:28:24',1,NULL,'9343FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(9344,130802,'Mild to moderate loss of bilateral lower extremity motor function, which may be a manifestation of SPINAL CORD DISEASES; PERIPHERAL NERVOUS SYSTEM DISEASES; MUSCULAR DISEASES; INTRACRANIAL HYPERTENSION; parasagittal brain lesions; and other conditions.','en',1,'2007-10-18 04:28:24',1,NULL,'9344FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(9345,130811,'A prolonged febrile illness commonly caused by serotypes of Salmonella paratyphi. It is similar to typhoid fever but less severe.','en',1,'2007-10-18 04:28:24',1,NULL,'9345FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(9346,130812,'A prolonged febrile illness commonly caused by serotypes of Salmonella paratyphi. It is similar to typhoid fever but less severe.','en',1,'2007-10-18 04:28:24',1,NULL,'9346FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(9347,130813,'A prolonged febrile illness commonly caused by serotypes of Salmonella paratyphi. It is similar to typhoid fever but less severe.','en',1,'2007-10-18 04:28:24',1,NULL,'9347FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(9348,130814,'A prolonged febrile illness commonly caused by serotypes of Salmonella paratyphi. It is similar to typhoid fever but less severe.','en',1,'2007-10-18 04:28:24',1,NULL,'9348FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(9349,130816,'Abnormally increased activity of the parathyroid glands, which may be primary or secondary (HYPERPARATHYRODISM, SECONDARY). Primary hyperparathyroidism is associated with neoplasia or hyperplasia. The excess of parathyroid hormone leads to alteration in function of bone, renal tubules, and gastrointestinal mucosa. (Dorland, 27th ed)','en',1,'2007-10-18 04:28:24',1,NULL,'9349FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(9350,130831,'Infections or infestations with parasitic organisms. They are often contracted through contact with an intermediate vector, but may occur as the result of direct exposure.','en',1,'2007-10-18 04:28:24',1,NULL,'9350FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(9351,130832,'Suppurative inflammation of the tissues of the internal structures of the eye; not all layers of the uvea are affected. Fungi, necrosis of intraocular tumors, and retained intraocular foreign bodies often cause a purulent endophthalmitis.','en',1,'2007-10-18 04:28:24',1,NULL,'9351FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(9352,130839,'The term applied to a group of relatively uncommon inflammatory, maculopapular, scaly eruptions of unknown etiology and resistant to conventional treatment. Eruptions are both psoriatic and lichenoid in appearance, but the diseases are distinct from psoriasis, lichen planus, or other recognized dermatoses. Proposed nomenclature divides parapsoriasis into two distinct subgroups, PITYRIASIS LICHENOIDES and parapsoriasis en plaques (small- and large-plaque parapsoriasis).','en',1,'2007-10-18 04:28:24',1,NULL,'9352FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(9353,130840,'The term applied to a group of relatively uncommon inflammatory, maculopapular, scaly eruptions of unknown etiology and resistant tLine truncated
-INSERT INTO `concept_description` VALUES (12880,141393,'Excretory-related psychiatric disorders usually diagnosed in infancy or childhood.','en',1,'2007-10-18 04:28:24',1,NULL,'12880FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12882,141399,'Subjectively experienced sensations in the absence of an appropriate stimulus, but which are regarded by the individual as real. They may be of organic origin or associated with MENTAL DISORDERS.','en',1,'2007-10-18 04:28:24',1,NULL,'12882FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12883,141403,'The state of the body in relation to the intake and excretion of water and electrolytes, particularly sodium and potassium. It exists in a metabolic balance internally with BODY FLUID COMPARTMENTS, total BODY WATER, BLOOD VOLUME, EXTRACELLULAR SPACE, etc., externally through sensible and insensible SWEATING. The hypothalamus controls water balance. (Dorland, 27th ed; Mountcastle, Medical Physiology, 14th ed, 1980, p1152)','en',1,'2007-10-18 04:28:24',1,'2020-05-07 21:26:05','12883FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12884,141406,'Injuries to tissues caused by contact with heat, steam, chemicals (BURNS, CHEMICAL), electricity (BURNS, ELECTRIC), or the like.','en',1,'2007-10-18 04:28:24',1,NULL,'12884FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12886,141412,'Accumulation of watery fluid in the cavity of a joint. (Dorland, 27th ed)','en',1,'2007-10-18 04:28:24',1,NULL,'12886FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12887,141421,'Defect of the interventricular septum with severe pulmonary hypertension, hypertrophy of the right ventricle, and latent or overt cyanosis.','en',1,'2007-10-18 04:28:24',1,NULL,'12887FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12888,141422,'A group of inherited disorders of the connective tissue that vary in severity and are transmitted as autosomal recessive, autosomal dominant, or X-linked recessive traits. The primary characteristics are hyperextensible skin and joints, tendency to bruise, reduced wound healing capability, pseudotumors, and ocular defects. (From Dorland, 27th ed)','en',1,'2007-10-18 04:28:24',1,NULL,'12888FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12889,141423,'A group of inherited disorders of the connective tissue that vary in severity and are transmitted as autosomal recessive, autosomal dominant, or X-linked recessive traits. The primary characteristics are hyperextensible skin and joints, tendency to bruise, reduced wound healing capability, pseudotumors, and ocular defects. (From Dorland, 27th ed)','en',1,'2007-10-18 04:28:24',1,NULL,'12889FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12890,141424,'A group of inherited disorders of the connective tissue that vary in severity and are transmitted as autosomal recessive, autosomal dominant, or X-linked recessive traits. The primary characteristics are hyperextensible skin and joints, tendency to bruise, reduced wound healing capability, pseudotumors, and ocular defects. (From Dorland, 27th ed)','en',1,'2007-10-18 04:28:24',1,NULL,'12890FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12891,141425,'A group of inherited disorders of the connective tissue that vary in severity and are transmitted as autosomal recessive, autosomal dominant, or X-linked recessive traits. The primary characteristics are hyperextensible skin and joints, tendency to bruise, reduced wound healing capability, pseudotumors, and ocular defects. (From Dorland, 27th ed)','en',1,'2007-10-18 04:28:24',1,NULL,'12891FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12892,141426,'A group of inherited disorders of the connective tissue that vary in severity and are transmitted as autosomal recessive, autosomal dominant, or X-linked recessive traits. The primary characteristics are hyperextensible skin and joints, tendency to bruise, reduced wound healing capability, pseudotumors, and ocular defects. (From Dorland, 27th ed)','en',1,'2007-10-18 04:28:24',1,NULL,'12892FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12893,141427,'A group of inherited disorders of the connective tissue that vary in severity and are transmitted as autosomal recessive, autosomal dominant, or X-linked recessive traits. The primary characteristics are hyperextensible skin and joints, tendency to bruise, reduced wound healing capability, pseudotumors, and ocular defects. (From Dorland, 27th ed)','en',1,'2007-10-18 04:28:24',1,NULL,'12893FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12894,141428,'A group of inherited disorders of the connective tissue that vary in severity and are transmitted as autosomal recessive, autosomal dominant, or X-linked recessive traits. The primary characteristics are hyperextensible skin and joints, tendency to bruise, reduced wound healing capability, pseudotumors, and ocular defects. (From Dorland, 27th ed)','en',1,'2007-10-18 04:28:24',1,NULL,'12894FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(12895,141429,'A group of inherited disorders of the connective tissue that vary in severity and are transmitted as autosomal recessive, autosomal dominant, or X-linked recessive traits. The primary characteristics are hyperextensible skin and joints, tenLine truncated
-INSERT INTO `concept_description` VALUES (17084,161544,'Historical or clinical evidence of anemia without definitive diagnosis available.','en',1,'2013-01-11 19:00:53',1,NULL,'17084FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17085,161546,'Delivery in most of the rural communities are being conducted by trained birth attendants. Five cleans are clean surface, clean cord tie, clean hands, clean blade and clean cord stump.','en',1,'2013-01-12 02:40:11',1,NULL,'17085FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17086,161548,'An adjective or a non-specific or unspecified answer to a question','en',1,'2013-01-16 01:18:53',1,NULL,'17086FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17087,161549,'Indicates the location where the test to confirm HIV infection was done','en',1,'2013-01-24 18:10:20',1,'2013-01-30 14:48:00','17087FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17088,161550,'Name of referring facility or location\r\n','en',1,'2013-01-24 18:44:50',1,'2014-10-02 21:19:39','17088FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17089,161551,'District where a patient is transferred from\r\n','en',1,'2013-01-24 19:06:04',1,NULL,'17089FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17090,161552,'The date tuberculosis patient got enrolled for the first time in the program\r\n','en',1,'2013-01-24 19:26:01',1,'2016-07-10 03:14:55','17090FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17091,161553,'Unit of measurement of mass','en',1,'2013-01-24 19:30:41',1,'2014-04-15 18:59:51','17091FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17092,161554,'Unit of measurement of mass','en',1,'2013-01-24 19:34:46',1,'2014-05-15 19:59:21','17092FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17093,161555,'This is a general concept which can be used for HIV, tuberculosis or any other treatment programs.','en',1,'2013-01-24 19:52:40',1,'2016-08-22 14:40:41','17093FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17094,161556,'How frequently the medications are prescribed to the patient?','en',1,'2013-01-24 19:59:27',1,'2013-01-24 20:26:54','17094FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17095,161557,'Has the client\'s partner received on-site HIV testing?','en',1,'2013-01-24 20:03:22',1,'2016-07-10 04:04:51','17095FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17096,161558,'Has the client been screened for STI (during this visit)?','en',1,'2013-01-24 20:06:24',1,NULL,'17096FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17097,161560,'The date that the patient was referred in to the facility','en',1,'2013-01-31 13:33:22',1,'2017-02-23 00:21:14','17097FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17098,161561,'The date the patient was referred out to another facility or provider','en',1,'2013-01-31 13:34:06',1,NULL,'17098FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17099,161562,'The name of the facility or provider where the patient was referred TO.','en',1,'2013-01-31 13:38:06',1,'2016-07-10 04:07:53','17099FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17100,161563,'The unit of strength for a medication','en',1,'2013-01-31 17:56:41',1,NULL,'17100FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17101,116824,'This concept includes injury of liver or gallbladder','en',1,'2013-01-31 18:03:24',1,NULL,'17101FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17102,161564,'The name of the district in which the facility resides that enrolled the patient','en',1,'2013-02-01 14:24:05',1,NULL,'17102FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17103,161565,'Infection of a nematode parasite called Wuchereria bancrofti which usually infests lymphatic system','en',1,'2013-02-05 15:59:01',1,'2016-07-28 23:57:10','17103FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17104,161570,'A stress fracture is an overuse injury. It occurs when muscles become fatigued and are unable to absorb added shock. Eventually, the fatigued muscle transfers the overload of stress to the bone causing a tiny crack called a stress fracture. (American academy of orhtopaedic surgeons)','en',1,'2013-02-06 19:23:38',1,NULL,'17104FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17105,161572,'This is one of the causes for obstructed labor','en',1,'2013-02-07 19:31:51',1,NULL,'17105FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17106,161571,'Severe dysplasia of uterine cervix.','en',1,'2013-02-10 13:34:58',1,NULL,'17106FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17107,161578,'Difficulty using visuospatial reasoning','en',1,'2013-02-14 02:57:51',1,NULL,'17107FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17108,161579,'Deficits in visuospatial reasoning above level of just difficulty','en',1,'2013-02-14 02:59:30',1,NULL,'17108FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17109,161582,'Febrile seizures plus (FS+) (can start in infancy)\r\nREF: http://www.ilae.org/Visitors/Centre/ctf/documents/ClassificationReport_2010_000.pdf','en',1,'2013-02-14 03:21:58',1,'2013-02-19 17:42:43','17109FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17110,161586,'Syndrome due to mutation in the ROBO3 gene','en',1,'2013-02-18 14:22:32',1,'2013-02-19 15:37:03','17110FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17111,161592,'Abnormal cerebral cortical cell proliferation not ascribed to neoplastic change.','en',1,'2013-02-20 02:52:28',1,NULL,'17111FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF'),(17112,161600,'Includes asylum seekers,Line truncated
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00:00:00',7311,0,1,NULL,NULL,'7311BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81951,'Phenobarbital','en',1,'2006-12-17 00:00:00',7312,0,1,NULL,NULL,'7312BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81952,'Phenobarbital quinidine','en',1,'2006-12-17 00:00:00',7313,0,1,NULL,NULL,'7313BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81953,'Phenobarbital sodium','en',1,'2006-12-17 00:00:00',7314,0,1,NULL,NULL,'7314BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81956,'Phenol','en',1,'2006-12-17 00:00:00',7315,0,1,NULL,NULL,'7315BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81959,'Phenolphthalein','en',1,'2006-12-17 00:00:00',7316,0,1,NULL,NULL,'7316BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81960,'Phenolsulfonphthalein','en',1,'2006-12-17 00:00:00',7317,0,1,NULL,NULL,'7317BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81961,'Phenoperidine','en',1,'2006-12-17 00:00:00',7318,0,1,NULL,NULL,'7318BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81962,'Phenoperidine hydrochloride','en',1,'2006-12-17 00:00:00',7319,0,1,NULL,NULL,'7319BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81964,'Phenothrin','en',1,'2006-12-17 00:00:00',7320,0,1,NULL,NULL,'7320BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81965,'Phenoxybenzamine','en',1,'2006-12-17 00:00:00',7321,0,1,NULL,NULL,'7321BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81966,'Phenoxybenzamine hydrochloride','en',1,'2006-12-17 00:00:00',7322,0,1,NULL,NULL,'7322BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81967,'Phenoxyethanol','en',1,'2006-12-17 00:00:00',7323,0,1,NULL,NULL,'7323BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81968,'Phenprocoumon','en',1,'2006-12-17 00:00:00',7324,0,1,NULL,NULL,'7324BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81969,'Phensuximide','en',1,'2006-12-17 00:00:00',7325,0,1,NULL,NULL,'7325BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81971,'Phentermine','en',1,'2006-12-17 00:00:00',7326,0,1,NULL,NULL,'7326BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81972,'Phentermine hydrochloride','en',1,'2006-12-17 00:00:00',7327,0,1,NULL,NULL,'7327BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81973,'Phentermine resin','en',1,'2006-12-17 00:00:00',7328,0,1,NULL,NULL,'7328BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81974,'Phentermine resin complex','en',1,'2006-12-17 00:00:00',7329,0,1,NULL,NULL,'7329BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81977,'Phentolamine','en',1,'2006-12-17 00:00:00',7330,0,1,NULL,NULL,'7330BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81978,'Phentolamine mesylate','en',1,'2006-12-17 00:00:00',7331,0,1,NULL,NULL,'7331BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81985,'Phenyl salicylate','en',1,'2006-12-17 00:00:00',7332,0,1,NULL,NULL,'7332BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(81986,'Phenylacetate','en',1,'2006-12-17 00:00:00',7333,0,1,NULL,NULL,'7333BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',Line truncated
-INSERT INTO `concept_name` VALUES (116653,'Eye Hemorrhage','en',1,'2007-10-18 04:28:24',17090,0,1,NULL,NULL,'17090BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116655,'Foreign Body in Vitreous','en',1,'2007-10-18 04:28:24',17092,0,1,NULL,NULL,'17092BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116659,'Intracranial Hemorrhage Following Injury, with Open Intracranial Wound, Prolonged ( More than 24 Hours) Loss of Consciousness and Return to Pre-Existing Conscious Level','en',1,'2007-10-18 04:28:24',17095,0,1,NULL,NULL,'17095BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116661,'Intracranial Hemorrhage Following Injury without Open Intracranial Wound and with Loss of Consciousness of Unspecified Duration','en',1,'2007-10-18 04:28:24',17096,0,1,NULL,NULL,'17096BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116662,'Intracranial Hemorrhage Following Injury, with Open Intracranial Wound, Concussion','en',1,'2007-10-18 04:28:24',17097,0,1,NULL,NULL,'17097BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116663,'Intracranial Hemorrhage Following Injury, Concussion','en',1,'2007-10-18 04:28:24',17098,0,1,NULL,NULL,'17098BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116665,'Intracranial Haemorrhage Following Injury without Open Intracranial Wound and with Brief Loss of Consciousness (Less than One Hour)','en',1,'2007-10-18 04:28:24',17099,0,1,NULL,NULL,'17099BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116666,'Intracranial Injury, Prolonged (More than 24 Hours) Loss of Consciousness and Return to Pre-Existing Conscious Level','en',1,'2007-10-18 04:28:24',17100,0,1,NULL,NULL,'17100BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116667,'Intracranial Haemorrhage Following Injury without Open Intracranial Wound and with Prolonged Loss of Consciousness (More than 24 Hours) and Return to Pre-Existing Concious Level','en',1,'2007-10-18 04:28:24',17101,0,1,NULL,NULL,'17101BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116668,'Intracranial Haemorrhage Following Injury with Intracranial Wound and Moderate Loss of Consciousness (1-24 Hours)','en',1,'2007-10-18 04:28:24',17102,0,1,NULL,NULL,'17102BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116673,'Intracranial Hemorrhage Following Injury','en',1,'2007-10-18 04:28:24',17105,0,1,NULL,NULL,'17105BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116675,'Haemorrhage Intracranial','en',1,'2007-10-18 04:28:24',17107,0,1,NULL,NULL,'17107BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116677,'Intracerebral Hemorrhage','en',1,'2007-10-18 04:28:24',17109,0,1,NULL,NULL,'17109BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116679,'Intra-Abdominal Hernia','en',1,'2007-10-18 04:28:24',17110,0,1,NULL,NULL,'17110BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116680,'Internal Hernia','en',1,'2007-10-18 04:28:24',17111,0,1,NULL,NULL,'17111BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116684,'Abdominal Swelling, Left Lower Quadrant','en',1,'2007-10-18 04:28:24',17115,0,1,NULL,NULL,'17115BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116688,'Abdominal or Pelvic Swelling, Mass or Lump','en',1,'2007-10-18 04:28:24',17119,0,1,NULL,NULL,'17119BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116689,'Intestinal Obstruction','en',1,'2007-10-18 04:28:24',17120,0,1,NULL,NULL,'17120BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116692,'Ileus','en',1,'2007-10-18 04:28:24',17123,0,1,NULL,NULL,'17123BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116695,'Intestinal Infection','en',1,'2007-10-18 04:28:24',17126,0,1,NULL,NULL,'17126BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116696,'E Coli Enteritis','en',1,'2007-10-18 04:28:24',17127,0,1,NULL,NULL,'17127BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116697,'Intestinal Infection due to Intestinal E. Coli Infection','en',1,'2007-10-18 04:28:24',17128,0,1,NULL,NULL,'17128BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116698,'Intestinal Infection due to E. Coli','en',1,'2007-10-18 04:28:24',17129,0,1,NULL,NULL,'17129BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116699,'Intestinal Helminthiasis','en',1,'2007-10-18 04:28:24',17130,0,1,NULL,NULL,'17130BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116700,'Intestinal helminthiasis, other','en',1,'2007-10-18 04:28:24',17131,0,1,NULL,NULL,'17131BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116705,'Disc Disorder of Cervical Region','en',1,'2007-10-18 04:28:24',17135,0,1,NULL,NULL,'17135BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116706,'Disc Disorder','en',1,'2007-10-18 04:28:24',17136,0,1,NULL,NULL,'17136BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116707,'Intertrochanteric Fracture','en',1,'2007-10-18 04:28:24',17137,Line truncated
-INSERT INTO `concept_name` VALUES (126508,'Siderosilicosis','en',1,'2007-10-18 04:28:24',26546,0,1,NULL,NULL,'26546BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126509,'Sideropenic Anaemia with Reticuloendothelial Siderosis','en',1,'2007-10-18 04:28:24',26547,0,1,NULL,NULL,'26547BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126510,'Sickle Cell-Hemoglobin E Disease','en',1,'2007-10-18 04:28:24',26548,0,1,NULL,NULL,'26548BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126511,'Sickle Cell-Hemoglobin D Disease','en',1,'2007-10-18 04:28:24',26549,0,1,NULL,NULL,'26549BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126512,'Sickle Cell-Beta-Thalassemia','en',1,'2007-10-18 04:28:24',26550,0,1,NULL,NULL,'26550BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126513,'Sickle cell trait','en',1,'2007-10-18 04:28:24',26551,0,1,NULL,NULL,'26551BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126514,'Sickle Cell Nephropathy','en',1,'2007-10-18 04:28:24',26552,0,1,NULL,NULL,'26552BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126515,'Sick-Euthyroid Syndrome','en',1,'2007-10-18 04:28:24',26553,0,1,NULL,NULL,'26553BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126516,'Sick Sinus Syndrome','en',1,'2007-10-18 04:28:24',26554,0,1,NULL,NULL,'26554BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126517,'Sick Building Syndrome','en',1,'2007-10-18 04:28:24',26555,0,1,NULL,NULL,'26555BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126518,'Sibling Jealousy','en',1,'2007-10-18 04:28:24',26556,0,1,NULL,NULL,'26556BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126519,'Sialolithiasis','en',1,'2007-10-18 04:28:24',26557,0,1,NULL,NULL,'26557BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126520,'Sialodocholithiasis','en',1,'2007-10-18 04:28:24',26558,0,1,NULL,NULL,'26558BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126521,'Sialodochitis','en',1,'2007-10-18 04:28:24',26559,0,1,NULL,NULL,'26559BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126522,'Sialoangiitis','en',1,'2007-10-18 04:28:24',26560,0,1,NULL,NULL,'26560BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126523,'Sialoadenitis','en',1,'2007-10-18 04:28:24',26561,0,1,NULL,NULL,'26561BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126524,'Sialidosis','en',1,'2007-10-18 04:28:24',26562,0,1,NULL,NULL,'26562BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126525,'Sialectasia','en',1,'2007-10-18 04:28:24',26563,0,1,NULL,NULL,'26563BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126526,'Shyness Disorder of Childhood','en',1,'2007-10-18 04:28:24',26564,0,1,NULL,NULL,'26564BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126527,'Shy-Drager Syndrome','en',1,'2007-10-18 04:28:24',26565,0,1,NULL,NULL,'26565BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126528,'Shwachman Syndrome','en',1,'2007-10-18 04:28:24',26566,0,1,NULL,NULL,'26566BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126529,'Shunt Nephritis','en',1,'2007-10-18 04:28:24',26567,0,1,NULL,NULL,'26567BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126530,'Shunt Haemosiderosis','en',1,'2007-10-18 04:28:24',26568,0,1,NULL,NULL,'26568BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126531,'Shuni Virus Disease','en',1,'2007-10-18 04:28:24',26569,0,1,NULL,NULL,'26569BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126532,'Shuffling Gait','en',1,'2007-10-18 04:28:24',26570,0,1,NULL,NULL,'26570BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126534,'Shoulder Stiff','en',1,'2007-10-18 04:28:24',26572,0,1,NULL,NULL,'26572BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126535,'Shoulder Pain','en',1,'2007-10-18 04:28:24',26573,0,1,NULL,NULL,'26573BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126536,'Shoulder joint pain','en',1,'2007-10-18 04:28:24',26574,0,1,NULL,NULL,'26574BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126538,'Shoulder Girdle and Upper Limb Multiple Nerve Injuries','en',1,'2007-10-18 04:28:24',26576,0,1,NULL,NULL,'26576BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126540,'Shoulder Dystocia with Antenatal Problem','en',1,'2007-10-18 04:28:24',26578,0,1,NULL,NULL,'26578BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126541,'Shoulder Dystocia - Delivered','en',1,'2007-10-18 04:28:24',26579,0,1,NULL,NULL,'26579BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126542,'Shotgun wound','en',1,'2007-10-18 04:28:24',26580,0,1,NULL,NULL,'26580BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126543,'Shotgun Accident','en',1,'2007-10-18 04:28:24',26581,0,1,NULL,NULL,'26581BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126544,'Shoshin Beriberi','en',1,'2007-10-18 04:28:24',26582,0,1,NULine truncated
-INSERT INTO `concept_name` VALUES (134611,'Maternal Diabetes Mellitus with Hypoglycaemia Affecting Foetus or Newborn','en',1,'2007-10-18 04:28:24',34492,0,1,NULL,NULL,'34492BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134612,'Maternal Death','en',1,'2007-10-18 04:28:24',34493,0,1,NULL,NULL,'34493BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134613,'Masturbation','en',1,'2007-10-18 04:28:24',34494,0,1,NULL,NULL,'34494BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134614,'Mastoiditis','en',1,'2007-10-18 04:28:24',34495,0,1,NULL,NULL,'34495BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134615,'Mastitis','en',1,'2008-04-09 17:07:47',34496,0,1,NULL,NULL,'34496BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134617,'Mast Cell Tumor','en',1,'2007-10-18 04:28:24',34498,0,1,NULL,NULL,'34498BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134619,'Mast Cell Malignancy of Spleen','en',1,'2007-10-18 04:28:24',34500,0,1,NULL,NULL,'34500BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134620,'Mast Cell Malignancy of Lymph Nodes of Multiple Sites','en',1,'2007-10-18 04:28:24',34501,0,1,NULL,NULL,'34501BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134621,'Mast Cell Malignancy of Lymph Nodes of Inguinal Region and Lower Limb','en',1,'2007-10-18 04:28:24',34502,0,1,NULL,NULL,'34502BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134622,'Mast Cell Malignancy of Lymph Nodes of Head, Face and Neck','en',1,'2007-10-18 04:28:24',34503,0,1,NULL,NULL,'34503BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134623,'Mast Cell Malignancy of Lymph Nodes of Axilla and Upper Limb','en',1,'2007-10-18 04:28:24',34504,0,1,NULL,NULL,'34504BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134624,'Mast Cell Malignancy of Intrathoracic Lymph Nodes','en',1,'2007-10-18 04:28:24',34505,0,1,NULL,NULL,'34505BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134625,'Mast Cell Malignancy of Intrapelvic Lymph Nodes','en',1,'2007-10-18 04:28:24',34506,0,1,NULL,NULL,'34506BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134626,'Mast Cell Malignancy of Intra-Abdominal Lymph Nodes','en',1,'2007-10-18 04:28:24',34507,0,1,NULL,NULL,'34507BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134627,'Mast Cell Malignancy','en',1,'2007-10-18 04:28:24',34508,0,1,NULL,NULL,'34508BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134628,'Mast Cell Leukaemia','en',1,'2007-10-18 04:28:24',34509,0,1,NULL,NULL,'34509BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134630,'Mast Cell Disease','en',1,'2007-10-18 04:28:24',34511,0,1,NULL,NULL,'34511BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134631,'Massive Tremor','en',1,'2007-10-18 04:28:24',34512,0,1,NULL,NULL,'34512BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134632,'Massive Silicotic Fibrosis of Lung','en',1,'2007-10-18 04:28:24',34513,0,1,NULL,NULL,'34513BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134633,'Massive Pubertal Hypertrophy of Breast','en',1,'2007-10-18 04:28:24',34514,0,1,NULL,NULL,'34514BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134636,'Massive Necrosis of Intestine','en',1,'2007-10-18 04:28:24',34515,0,1,NULL,NULL,'34515BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134637,'Massive Fibrosis of Lung','en',1,'2007-10-18 04:28:24',34516,0,1,NULL,NULL,'34516BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134638,'Massive Epicranial Subaponeurotic Hemorrhage','en',1,'2007-10-18 04:28:24',34517,0,1,NULL,NULL,'34517BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134639,'Massive Epicranial Subaponeurotic Haemorrhage as Birth Trauma','en',1,'2007-10-18 04:28:24',34518,0,1,NULL,NULL,'34518BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134640,'Massive Calcification in Paraplegic','en',1,'2007-10-18 04:28:24',34519,0,1,NULL,NULL,'34519BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134641,'Masshoff\'s Syndrome','en',1,'2007-10-18 04:28:24',34520,0,1,NULL,NULL,'34520BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134642,'Masseter Spasm','en',1,'2007-10-18 04:28:24',34521,0,1,NULL,NULL,'34521BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134643,'Mass of Neck','en',1,'2007-10-18 04:28:24',34522,0,1,NULL,NULL,'34522BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134644,'Mass of Eye Structure','en',1,'2007-10-18 04:28:24',34523,0,1,NULL,NULL,'34523BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134645,'Mass of Eye','en',1,'2007-10-18 04:28:24',34524,0,1,NULL,NULL,'34524BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134646,'Mass of Ear Structure','en',1,'2007-10-18 04:28:24',34525,0,1,NULL,NULL,'34525BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134647,'Mass of Body Structure','en',1,'200Line truncated
-INSERT INTO `concept_name` VALUES (142195,'Disease due to Pentastomida','en',1,'2007-10-18 04:28:24',41923,0,1,NULL,NULL,'41923BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142196,'Disease due to Pentastoma','en',1,'2007-10-18 04:28:24',41924,0,1,NULL,NULL,'41924BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142197,'Disease due to Parvoviridae','en',1,'2007-10-18 04:28:24',41925,0,1,NULL,NULL,'41925BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142198,'Disease due to Parapoxvirus','en',1,'2007-10-18 04:28:24',41926,0,1,NULL,NULL,'41926BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142200,'Disease due to Papilloma Virus','en',1,'2007-10-18 04:28:24',41927,0,1,NULL,NULL,'41927BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142201,'Disease due to Orthoreovirus','en',1,'2007-10-18 04:28:24',41928,0,1,NULL,NULL,'41928BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142202,'Disease due to Orthopoxvirus','en',1,'2007-10-18 04:28:24',41929,0,1,NULL,NULL,'41929BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142203,'Disease due to Orthomyxoviridae','en',1,'2007-10-18 04:28:24',41930,0,1,NULL,NULL,'41930BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142204,'Disease due to Orbivirus','en',1,'2007-10-18 04:28:24',41931,0,1,NULL,NULL,'41931BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142206,'Disease due to Nairovirus','en',1,'2007-10-18 04:28:24',41933,0,1,NULL,NULL,'41933BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142207,'Disease due to Morbillivirus','en',1,'2007-10-18 04:28:24',41934,0,1,NULL,NULL,'41934BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142208,'Disease due to Lyssavirus','en',1,'2007-10-18 04:28:24',41935,0,1,NULL,NULL,'41935BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142209,'Disease due to Lentivirus','en',1,'2007-10-18 04:28:24',41936,0,1,NULL,NULL,'41936BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142210,'Disease due to Hantavirus','en',1,'2007-10-18 04:28:24',41937,0,1,NULL,NULL,'41937BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142211,'Disease due to Gram-Positive Bacteria','en',1,'2007-10-18 04:28:24',41938,0,1,NULL,NULL,'41938BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142213,'Disease due to Gram-Negative Bacteria','en',1,'2007-10-18 04:28:24',41940,0,1,NULL,NULL,'41940BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142214,'Disease due to Gammaherpesvirinae','en',1,'2007-10-18 04:28:24',41941,0,1,NULL,NULL,'41941BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142215,'Disease due to Flavivirus','en',1,'2007-10-18 04:28:24',41942,0,1,NULL,NULL,'41942BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142218,'Disease due to Enterovirus','en',1,'2007-10-18 04:28:24',41945,0,1,NULL,NULL,'41945BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142219,'Disease due to Eimeria','en',1,'2007-10-18 04:28:24',41946,0,1,NULL,NULL,'41946BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142221,'HTLV II','en',1,'2007-10-18 04:28:24',41948,0,1,NULL,NULL,'41948BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142222,'HTLV I','en',1,'2007-10-18 04:28:24',41949,0,1,NULL,NULL,'41949BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142224,'Disease due to Coronaviridae','en',1,'2007-10-18 04:28:24',41951,0,1,NULL,NULL,'41951BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142225,'Disease due to Birnavirus','en',1,'2007-10-18 04:28:24',41952,0,1,NULL,NULL,'41952BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142226,'Disease due to Betaherpesvirinae','en',1,'2007-10-18 04:28:24',41953,0,1,NULL,NULL,'41953BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142227,'Disease due to Armillifer','en',1,'2007-10-18 04:28:24',41954,0,1,NULL,NULL,'41954BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142228,'Disease due to Arenavirus','en',1,'2007-10-18 04:28:24',41955,0,1,NULL,NULL,'41955BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142229,'Disease due to Aphthovirus','en',1,'2007-10-18 04:28:24',41956,0,1,NULL,NULL,'41956BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142230,'Disease due to Annelida','en',1,'2007-10-18 04:28:24',41957,0,1,NULL,NULL,'41957BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142231,'Disease due to Alphavirus','en',1,'2007-10-18 04:28:24',41958,0,1,NULL,NULL,'41958BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142232,'Disease due to Alphaherpesvirinae','en',1,'2007-10-18 04:28:24',41959,0,1,NULL,NULL,'41959BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142234,'Disease Caused by Mycoplasma','en',1,'2007-10-18 04:28:24',41961,0,1,NULL,NULL,'41961BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142236,'Discrete Colliquative Keratopathy','en',1,'2007-10-18 Line truncated
-INSERT INTO `concept_name` VALUES (149601,'Acute Pelvic Inflammatory Disease','en',1,'2007-10-18 04:28:24',49217,0,1,NULL,NULL,'49217BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149602,'Acute Paranoid Reaction','en',1,'2007-10-18 04:28:24',49218,0,1,NULL,NULL,'49218BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149603,'Acute Parametritis and Pelvic Cellulitis','en',1,'2007-10-18 04:28:24',49219,0,1,NULL,NULL,'49219BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149605,'Acute Pansinusitis','en',1,'2007-10-18 04:28:24',49221,0,1,NULL,NULL,'49221BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149606,'Acute Panmyelosis with Myelofibrosis','en',1,'2007-10-18 04:28:24',49222,0,1,NULL,NULL,'49222BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149607,'Acute Pancreatitis','en',1,'2007-10-18 04:28:24',49223,0,1,NULL,NULL,'49223BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149609,'Acute Otitis Media','en',1,'2007-10-18 04:28:24',49225,0,1,NULL,NULL,'49225BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149611,'Acute Osteomyelitis of Femur','en',1,'2007-10-18 04:28:24',49226,0,1,NULL,NULL,'49226BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149612,'Acute Osteomyelitis of Thigh','en',1,'2007-10-18 04:28:24',49227,0,1,NULL,NULL,'49227BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149615,'Acute Osteomyelitis of Jaw','en',1,'2007-10-18 04:28:24',49228,0,1,NULL,NULL,'49228BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149617,'Acute osteomyelitis','en',1,'2007-10-18 04:28:24',49229,0,1,NULL,NULL,'49229BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149619,'Acute Obstructive Appendicitis with Perforation and Peritonitis','en',1,'2007-10-18 04:28:24',49231,0,1,NULL,NULL,'49231BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149620,'Acute Obstructive Appendicitis','en',1,'2007-10-18 04:28:24',49232,0,1,NULL,NULL,'49232BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149621,'Acute Obliterating Bronchiolitis','en',1,'2007-10-18 04:28:24',49233,0,1,NULL,NULL,'49233BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149622,'Acute Non-Suppurative Thyroiditis','en',1,'2007-10-18 04:28:24',49234,0,1,NULL,NULL,'49234BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149623,'Acute Nonsuppurative Osteitis of Jaw','en',1,'2007-10-18 04:28:24',49235,0,1,NULL,NULL,'49235BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149624,'Acute Non-Psychotic Brain Syndrome','en',1,'2007-10-18 04:28:24',49236,0,1,NULL,NULL,'49236BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149625,'Acute Noninfective Hepatitis','en',1,'2007-10-18 04:28:24',49237,0,1,NULL,NULL,'49237BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149626,'Acute Neutrophilia','en',1,'2007-10-18 04:28:24',49238,0,1,NULL,NULL,'49238BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149627,'Acute Neuronopathic Gaucher\'s Disease','en',1,'2007-10-18 04:28:24',49239,0,1,NULL,NULL,'49239BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149628,'Acute Nephritis','en',1,'2007-10-18 04:28:24',49240,0,1,NULL,NULL,'49240BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149629,'Acute Necrotising Ulcerative Gingivostomatitis','en',1,'2007-10-18 04:28:24',49241,0,1,NULL,NULL,'49241BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149631,'Acute Necrotizing Pancreatitis','en',1,'2007-10-18 04:28:24',49242,0,1,NULL,NULL,'49242BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149632,'Acute Necrotising Otitis Media','en',1,'2007-10-18 04:28:24',49243,0,1,NULL,NULL,'49243BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149634,'Acute Necrotising Encephalitis','en',1,'2007-10-18 04:28:24',49245,0,1,NULL,NULL,'49245BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149635,'Acute Necrotising Cutaneous Leishmaniasis','en',1,'2007-10-18 04:28:24',49246,0,1,NULL,NULL,'49246BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149636,'Acute Necrosis of Pancreas','en',1,'2007-10-18 04:28:24',49247,0,1,NULL,NULL,'49247BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149637,'Acute Necrosis of Liver','en',1,'2007-10-18 04:28:24',49248,0,1,NULL,NULL,'49248BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149638,'Acute Myopericarditis','en',1,'2007-10-18 04:28:24',49249,0,1,NULL,NULL,'49249BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149639,'Acute Myometritis','en',1,'2007-10-18 04:28:24',49250,0,1,NULL,NULL,'49250BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149640,'Acute Myoendocarditis','en',1,'2007-10-18 04:28:24',49251,0,1,NULL,NULL,'49251BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149642,'Acute Myocardial Infarction of Septum','en',1,'2007-10-18 04:28:24',49253,0,1,NULL,NULL,'49253BBBBBBBBBBBBBBBBBBBBBBBBBBLine truncated
-INSERT INTO `concept_name` VALUES (148584,'reacción adversa a fármaco antiemético','es',1,'2009-08-18 16:03:14',57774,0,1,NULL,NULL,'57774BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148583,'reacción adversa a fármaco antiepiléptico','es',1,'2009-08-18 16:03:14',57775,0,1,NULL,NULL,'57775BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148582,'oxalosis por ingestión de anticongelante','es',1,'2009-08-18 16:03:14',57776,0,1,NULL,NULL,'57776BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148581,'reacción adversa a fármaco antimicótico','es',1,'2009-08-18 16:03:14',57777,0,1,NULL,NULL,'57777BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148580,'nefritis tubulointersticial mediada por anticuerpos anti - membrana basal glomerular','es',1,'2009-08-18 16:03:14',57778,0,1,NULL,NULL,'57778BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148579,'reacción adversa a fármaco antihipertensivo','es',1,'2009-08-18 16:03:14',57779,0,1,NULL,NULL,'57779BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148578,'sobredosis de compuesto de antimonio','es',1,'2009-08-18 16:03:14',57780,0,1,NULL,NULL,'57780BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148577,'neumoconiosis por antimonio','es',1,'2009-08-18 16:03:14',57781,0,1,NULL,NULL,'57781BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148576,'síndrome antifosfolípido','es',1,'2009-08-18 16:03:14',57782,0,1,NULL,NULL,'57782BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148575,'reacción adversa a fármaco antiprotozoario','es',1,'2009-08-18 16:03:14',57783,0,1,NULL,NULL,'57783BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148573,'conducta antisocial','es',1,'2009-08-18 16:03:14',57784,0,1,NULL,NULL,'57784BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148572,'deficiencia de antitrombina III','es',1,'2009-08-18 16:03:14',57785,0,1,NULL,NULL,'57785BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148571,'reacción adversa a fármaco antitiroideo','es',1,'2009-08-18 16:03:14',57786,0,1,NULL,NULL,'57786BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148570,'reacción adversa a agente antivaricoso','es',1,'2009-08-18 16:03:14',57787,0,1,NULL,NULL,'57787BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148569,'intoxicación por droga antivaricosa','es',1,'2009-08-18 16:03:14',57788,0,1,NULL,NULL,'57788BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148568,'reacción adversa a fármaco antiviral','es',1,'2009-08-18 16:03:14',57789,0,1,NULL,NULL,'57789BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148567,'síndrome de Antley - Bixler','es',1,'2009-08-18 16:03:14',57790,0,1,NULL,NULL,'57790BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148566,'anuria','es',1,'2009-08-18 16:03:14',57791,0,1,NULL,NULL,'57791BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148565,'eritrofobia','es',1,'2009-08-18 16:03:14',57792,0,1,NULL,NULL,'57792BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148564,'crisis de ansiedad','es',1,'2009-08-18 16:03:14',57793,0,1,NULL,NULL,'57793BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148563,'trastorno de ansiedad debido a una enfermedad general','es',1,'2009-08-18 16:03:14',57794,0,1,NULL,NULL,'57794BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148562,'trastorno de ansiedad en la adolescencia','es',1,'2009-08-18 16:03:14',57795,0,1,NULL,NULL,'57795BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148561,'trastorno de ansiedad en la niñez','es',1,'2009-08-18 16:03:14',57796,0,1,NULL,NULL,'57796BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148560,'trastorno de ansiedad de la niñez O la adolescencia','es',1,'2009-08-18 16:03:14',57797,0,1,NULL,NULL,'57797BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148559,'hiperventilación por ansiedad','es',1,'2009-08-18 16:03:14',57798,0,1,NULL,NULL,'57798BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148558,'histeria de ansiedad','es',1,'2009-08-18 16:03:14',57799,0,1,NULL,NULL,'57799BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148557,'intoxicación por ansiolíticos','es',1,'2009-08-18 16:03:14',57800,0,1,NULL,NULL,'57800BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148556,'trastorno mental orgánico inducido por ansiolíticos','es',1,'2009-08-18 16:03:14',57801,0,1,NULL,NULL,'57801BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148554,'obstrucción aortoilíaca','es',1,'2009-08-18 16:03:14',57802,1,1,'2016-04-26 00:00:00',NULL,'57802BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(148553,'obstrucción aortoilíaca','es',1,'2009-08-18 16:03:14',57803,1,1,'2016-04-26 00:00:00','','57803BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(148551,'túnel ventricular izquierdo aórtico','es',1,'2009-08-18 16:03:14',57804,0,1,NULine truncated
-INSERT INTO `concept_name` VALUES (141487,'eccema vacunal','es',1,'2009-08-18 16:03:14',64118,0,1,NULL,NULL,'64118BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141486,'púrpura eccematoide de Doucas y Kapetanakis','es',1,'2009-08-18 16:03:14',64119,0,1,NULL,NULL,'64119BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141485,'dermatitis eccematosa del párpado','es',1,'2009-08-18 16:03:14',64120,0,1,NULL,NULL,'64120BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141484,'Edema','es',1,'2009-08-18 16:03:14',64121,0,1,NULL,NULL,'64121BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141483,'edema ampolloso vesical','es',1,'2009-08-18 16:03:14',64122,0,1,NULL,NULL,'64122BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141482,'edema de párpado','es',1,'2009-08-18 16:03:14',64123,0,1,NULL,NULL,'64123BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141481,'edema de pie','es',1,'2009-08-18 16:03:14',64124,0,1,NULL,NULL,'64124BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141480,'edema de glotis','es',1,'2009-08-18 16:03:14',64125,0,1,NULL,NULL,'64125BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141479,'edema de laringe','es',1,'2009-08-18 16:03:14',64126,0,1,NULL,NULL,'64126BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141478,'edema de la pierna','es',1,'2009-08-18 16:03:14',64127,0,1,NULL,NULL,'64127BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141477,'edema de los órganos genitales masculinos','es',1,'2009-08-18 16:03:14',64128,0,1,NULL,NULL,'64128BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141476,'edema de la rinofaringe','es',1,'2009-08-18 16:03:14',64129,0,1,NULL,NULL,'64129BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141475,'edema del recién nacido','es',1,'2009-08-18 16:03:14',64130,0,1,NULL,NULL,'64130BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141473,'edema de pene','es',1,'2009-08-18 16:03:14',64131,0,1,NULL,NULL,'64131BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141472,'edema de faringe','es',1,'2009-08-18 16:03:14',64132,0,1,NULL,NULL,'64132BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141471,'edema de la médula espinal','es',1,'2009-08-18 16:03:14',64133,0,1,NULL,NULL,'64133BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141470,'edema de la lengua','es',1,'2009-08-18 16:03:14',64134,0,1,NULL,NULL,'64134BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141469,'edema de la vulva','es',1,'2009-08-18 16:03:14',64135,0,1,NULL,NULL,'64135BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141465,'edema, generalizado','es',1,'2009-08-18 16:03:14',64136,0,1,NULL,NULL,'64136BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141464,'laringitis edematosa','es',1,'2009-08-18 16:03:14',64137,0,1,NULL,NULL,'64137BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141461,'electroencefalograma anormal','es',1,'2009-08-18 16:03:14',64138,0,1,NULL,NULL,'64138BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(141461,'anomalía electroencefalográfica','es',1,'2009-08-18 16:03:14',64139,0,1,NULL,NULL,'64139BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141460,'efecto de la altura sobre los senos paranasales','es',1,'2009-08-18 16:03:14',64140,0,1,NULL,NULL,'64140BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141459,'efectos de fuerzas Y/O estados gravitacionales (G) anormales','es',1,'2009-08-18 16:03:14',64141,0,1,NULL,NULL,'64141BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141458,'efectos del calor Y/O de la luz','es',1,'2009-08-18 16:03:14',64142,0,1,NULL,NULL,'64142BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141457,'efectos de la altura','es',1,'2009-08-18 16:03:14',64143,0,1,NULL,NULL,'64143BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141456,'efectos de la altura sobre los oídos','es',1,'2009-08-18 16:03:14',64144,0,1,NULL,NULL,'64144BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141455,'efectos del hambre','es',1,'2009-08-18 16:03:14',64145,0,1,NULL,NULL,'64145BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141454,'efectos por descarga de rayos','es',1,'2009-08-18 16:03:14',64146,0,1,NULL,NULL,'64146BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141453,'efectos de la exposición excesiva a radiación electromagnética','es',1,'2009-08-18 16:03:14',64147,0,1,NULL,NULL,'64147BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141452,'efectos de la sed','es',1,'2009-08-18 16:03:14',64148,0,1,NULL,NULL,'64148BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141451,'síncope por esfuerzo','es',1,'2009-08-18 16:03:14',64149,0,1,NULL,NULL,'64149BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141450,'derrame de articulación acromioclavicular','es',1,'2009-08-18 16:03:14',64150,0,1Line truncated
-INSERT INTO `concept_name` VALUES (134202,'microgiria','es',1,'2009-08-18 16:03:14',70501,0,1,NULL,NULL,'70501BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134201,'microhepatía','es',1,'2009-08-18 16:03:14',70502,0,1,NULL,NULL,'70502BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134200,'microinfarto cardíaco','es',1,'2009-08-18 16:03:14',70503,0,1,NULL,NULL,'70503BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134199,'micromelia','es',1,'2009-08-18 16:03:14',70504,0,1,NULL,NULL,'70504BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134198,'cirrosis micronodular','es',1,'2009-08-18 16:03:14',70505,0,1,NULL,NULL,'70505BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134197,'microniquia','es',1,'2009-08-18 16:03:14',70506,0,1,NULL,NULL,'70506BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134196,'microfaquia','es',1,'2009-08-18 16:03:14',70507,0,1,NULL,NULL,'70507BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134195,'microftalmía asociada con otras anomalías del ojo Y/O los anexos oculares','es',1,'2009-08-18 16:03:14',70508,0,1,NULL,NULL,'70508BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134194,'microprolactinoma','es',1,'2009-08-18 16:03:14',70509,0,1,NULL,NULL,'70509BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134193,'colitis microscópica','es',1,'2009-08-18 16:03:14',70510,0,1,NULL,NULL,'70510BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134192,'distrofia corneal quística microscópica','es',1,'2009-08-18 16:03:14',70511,0,1,NULL,NULL,'70511BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134191,'hematuria microscópica','es',1,'2009-08-18 16:03:14',70512,0,1,NULL,NULL,'70512BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134190,'poliarteritis nudosa microscópica','es',1,'2009-08-18 16:03:14',70513,0,1,NULL,NULL,'70513BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134189,'microsporosis nigra','es',1,'2009-08-18 16:03:14',70514,0,1,NULL,NULL,'70514BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134188,'microstomía','es',1,'2009-08-18 16:03:14',70515,0,1,NULL,NULL,'70515BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134187,'microestrabismo','es',1,'2009-08-18 16:03:14',70516,0,1,NULL,NULL,'70516BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134186,'microtia','es',1,'2009-08-18 16:03:14',70517,0,1,NULL,NULL,'70517BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134185,'frecuencia miccional y poliuria','es',1,'2009-08-18 16:03:14',70518,0,1,NULL,NULL,'70518BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134184,'síncope de micción','es',1,'2009-08-18 16:03:14',70519,0,1,NULL,NULL,'70519BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134183,'sordera de frecuencia media','es',1,'2009-08-18 16:03:14',70520,0,1,NULL,NULL,'70520BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134182,'absceso medio abdominal','es',1,'2009-08-18 16:03:14',70521,0,1,NULL,NULL,'70521BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134180,'lepra dimorfa intermedia','es',1,'2009-08-18 16:03:14',70522,0,1,NULL,NULL,'70522BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134179,'esguince de articulación mediocarpiana','es',1,'2009-08-18 16:03:14',70523,0,1,NULL,NULL,'70523BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134178,'neuropatía del plexo braquial medio','es',1,'2009-08-18 16:03:14',70524,0,1,NULL,NULL,'70524BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134176,'anomalía del oído medio, que excluye a los huesecillos del oído','es',1,'2009-08-18 16:03:14',70525,0,1,NULL,NULL,'70525BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134175,'insomnio intermedio','es',1,'2009-08-18 16:03:14',70526,0,1,NULL,NULL,'70526BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134174,'síndrome del lóbulo medio','es',1,'2009-08-18 16:03:14',70527,0,1,NULL,NULL,'70527BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134173,'hemorragia meníngea media traumática','es',1,'2009-08-18 16:03:14',70528,0,1,NULL,NULL,'70528BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134172,'desviación hacia la línea media del arco dental','es',1,'2009-08-18 16:03:14',70529,0,1,NULL,NULL,'70529BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134171,'displasia frontonasal','es',1,'2009-08-18 16:03:14',70530,0,1,NULL,NULL,'70530BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134170,'soplo mesosistólico','es',1,'2009-08-18 16:03:14',70531,0,1,NULL,NULL,'70531BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134169,'necrosis hepática de la zona media','es',1,'2009-08-18 16:03:14',70532,0,1,NULL,NULL,'70532BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134168,'síndrome de Mietens','es',1,'2009-08-18 16:03:14',705Line truncated
-INSERT INTO `concept_name` VALUES (126598,'desnutrición caloricoproteica grave (Gomez: menos del 60% del peso adecuado)','es',1,'2009-08-18 16:03:14',76911,0,1,NULL,NULL,'76911BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126597,'depresión mayor recurrente grave con síntomas psicóticos','es',1,'2009-08-18 16:03:14',76912,0,1,NULL,NULL,'76912BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126596,'depresión mayor recurrente grave con síntomas psicóticos, congruente con el estado de ánimo','es',1,'2009-08-18 16:03:14',76913,0,1,NULL,NULL,'76913BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126595,'depresión mayor recurrente grave con síntomas psicóticos, incongruente con el estado de ánimo','es',1,'2009-08-18 16:03:14',76914,0,1,NULL,NULL,'76914BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126594,'depresión mayor recurrente grave sin síntomas psicóticos','es',1,'2009-08-18 16:03:14',76915,0,1,NULL,NULL,'76915BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126593,'bradicardia sinusal severa','es',1,'2009-08-18 16:03:14',76916,0,1,NULL,NULL,'76916BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126592,'deficiencia grave de esteroide 21 - hidroxilasa','es',1,'2009-08-18 16:03:14',76917,0,1,NULL,NULL,'76917BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126591,'miopatía miotubular severa ligada al cromosoma X','es',1,'2009-08-18 16:03:14',76918,0,1,NULL,NULL,'76918BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126590,'anormalidad de cromosoma sexual-fenotipo femenino','es',1,'2009-08-18 16:03:14',76919,0,1,NULL,NULL,'76919BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126588,'tumor de cordón germinal de ovario','es',1,'2009-08-18 16:03:14',76920,0,1,NULL,NULL,'76920BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126586,'síndrome de disociación fenotipo - cariotipo sexual','es',1,'2009-08-18 16:03:14',76921,0,1,NULL,NULL,'76921BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126585,'enfermedad relacionada con el sexo','es',1,'2009-08-18 16:03:14',76922,0,1,NULL,NULL,'76922BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126584,'trombocitopenia ligada al sexo','es',1,'2009-08-18 16:03:14',76923,0,1,NULL,NULL,'76923BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126583,'anestesia sexual','es',1,'2009-08-18 16:03:14',76924,0,1,NULL,NULL,'76924BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(165,'ataque sexual','es',1,'2009-08-18 16:03:14',76925,0,1,NULL,NULL,'76925BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126582,'ataque sexual','es',1,'2009-08-18 16:03:14',76926,0,1,NULL,NULL,'76926BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126581,'trastorno del deseo sexual','es',1,'2009-08-18 16:03:14',76927,0,1,NULL,NULL,'76927BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126580,'trastorno sexual','es',1,'2009-08-18 16:03:14',76928,0,1,NULL,NULL,'76928BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126579,'masoquismo sexual','es',1,'2009-08-18 16:03:14',76929,0,1,NULL,NULL,'76929BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126578,'falta de desarrollo sexual','es',1,'2009-08-18 16:03:14',76930,0,1,NULL,NULL,'76930BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126577,'trastorno sexual por dolor','es',1,'2009-08-18 16:03:14',76931,0,1,NULL,NULL,'76931BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126575,'piromanía sexual','es',1,'2009-08-18 16:03:14',76932,0,1,NULL,NULL,'76932BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126574,'sadismo sexual','es',1,'2009-08-18 16:03:14',76933,0,1,NULL,NULL,'76933BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126573,'enfermedad de Sezary de ganglios linfáticos de cabeza, cara y cuello','es',1,'2009-08-18 16:03:14',76934,0,1,NULL,NULL,'76934BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(126573,'enfermedad de Sézary de ganglios linfáticos de cabeza, cara y cuello','es',1,'2009-08-18 16:03:14',76935,0,1,NULL,NULL,'76935BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126572,'sombra','es',1,'2009-08-18 16:03:14',76936,0,1,NULL,NULL,'76936BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126571,'sombra pulmonar','es',1,'2009-08-18 16:03:14',76937,0,1,NULL,NULL,'76937BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126570,'síndrome del lactante sacudido','es',1,'2009-08-18 16:03:14',76938,0,1,NULL,NULL,'76938BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126569,'trastorno paranoide compartido','es',1,'2009-08-18 16:03:14',76939,0,1,NULL,NULL,'76939BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126568,'síndrome de Sheehan','es',1,'2009-08-18 16:03:14',76940,0,1,NULL,NULL,'76940BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(126567,'infección por Fasciola hepLine truncated
-INSERT INTO `concept_name` VALUES (117062,'estado de portador, agente infeccioso','es',1,'2009-08-18 16:03:14',83474,0,1,NULL,NULL,'83474BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117061,'enfermedad infecciosa/parasitaria en el embarazo/parto/puerperio','es',1,'2009-08-18 16:03:14',83475,0,1,NULL,NULL,'83475BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117058,'enfermedad infecciosa en la madre que complica el embarazo, el nacimiento Y/O el puerperio','es',1,'2009-08-18 16:03:14',83476,0,1,NULL,NULL,'83476BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117057,'enfermedad infecciosa de articulación','es',1,'2009-08-18 16:03:14',83477,1,1,'2016-04-26 00:00:00',NULL,'83477BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(117056,'enfermedad infecciosa de articulación','es',1,'2009-08-18 16:03:14',83478,0,1,NULL,NULL,'83478BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117054,'enfermedad infecciosa renal','es',1,'2009-08-18 16:03:14',83479,0,1,NULL,NULL,'83479BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117053,'enteritis infecciosa','es',1,'2009-08-18 16:03:14',83480,1,1,'2016-04-26 00:00:00',NULL,'83480BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(117052,'enteritis infecciosa','es',1,'2009-08-18 16:03:14',83481,0,1,NULL,NULL,'83481BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117050,'gastroenteritis infecciosa','es',1,'2009-08-18 16:03:14',83482,0,1,NULL,NULL,'83482BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117049,'peritonitis infecciosa','es',1,'2009-08-18 16:03:14',83483,0,1,NULL,NULL,'83483BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117045,'artritis infecciosa','es',1,'2009-08-18 16:03:14',83485,1,1,'2016-04-26 00:00:00','','83485BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(117043,'artritis infecciosa','es',1,'2009-08-18 16:03:14',83486,1,1,'2016-04-26 00:00:00','','83486BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(117042,'artritis infecciosa','es',1,'2009-08-18 16:03:14',83487,1,1,'2016-04-26 00:00:00',NULL,'83487BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(117034,'artritis infecciosa de articulación de la mano','es',1,'2009-08-18 16:03:14',83488,0,1,NULL,NULL,'83488BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117029,'artritis infecciosa de la región del hombro','es',1,'2009-08-18 16:03:14',83489,0,1,NULL,NULL,'83489BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117026,'artritis infecciosa','es',1,'2009-08-18 16:03:14',83490,0,1,NULL,NULL,'83490BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117024,'conjuntivitis infecciosa','es',1,'2009-08-18 16:03:14',83491,0,1,NULL,NULL,'83491BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117021,'cistitis infecciosa','es',1,'2009-08-18 16:03:14',83493,0,1,NULL,NULL,'83493BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117020,'encefalitis infecciosa','es',1,'2009-08-18 16:03:14',83494,1,1,'2016-04-26 00:00:00','','83494BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(117019,'encefalitis infecciosa','es',1,'2009-08-18 16:03:14',83495,1,1,'2016-04-26 00:00:00','','83495BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(117018,'encefalitis infecciosa','es',1,'2009-08-18 16:03:14',83496,0,1,NULL,NULL,'83496BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117017,'miositis infecciosa','es',1,'2009-08-18 16:03:14',83497,0,1,NULL,NULL,'83497BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117015,'otitis externa infecciosa','es',1,'2009-08-18 16:03:14',83498,0,1,NULL,NULL,'83498BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117014,'faringitis infecciosa','es',1,'2009-08-18 16:03:14',83499,1,1,'2016-04-26 00:00:00',NULL,'83499BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(117010,'vaginitis infecciosa','es',1,'2009-08-18 16:03:14',83500,0,1,NULL,NULL,'83500BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117005,'infestación por Anoplura','es',1,'2009-08-18 16:03:14',83502,0,1,NULL,NULL,'83502BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117004,'infestación por Trombicula','es',1,'2009-08-18 16:03:14',83503,1,1,'2016-04-26 00:00:00',NULL,'83503BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(117003,'infestación por Trombicula','es',1,'2009-08-18 16:03:14',83504,0,1,NULL,NULL,'83504BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(117002,'tuberculosis pulmonar infiltrativa','es',1,'2009-08-18 16:03:14',83505,0,1,NULL,NULL,'83505BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149,'enfermedad inflamatoria del cuello uterino','es',1,'2009-08-18 16:03:14',83506,0,1,NULL,NULL,'83506BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116995,'enfermedad inflamatoria del cuello uterino','es',1,'2009-08-18 16:03:14',83507,1,1,'2016-04-26 00:00:00',NULL,'83507BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(116994,'enfermedad inflamatoria del cuello uterino','es',1Line truncated
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09:35:54',99345,0,1,NULL,'','99345BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(72800,'Trixaicin','en',1,'2007-10-18 09:35:54',99346,0,1,NULL,NULL,'99346BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(72800,'Trixaicin HP','en',1,'2007-10-18 09:35:54',993Line truncated
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01:17:11',113034,0,1,NULL,NULL,'113034BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(143452,'contusie van de lies','nl',1,'2013-02-17 01:17:11',113035,0,1,NULL,NULL,'113035BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(148960,'verslaving aan amfetamine','nl',1,'2013-02-17 01:17:11',113036,0,1,NULL,NULL,'113036BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(145291,'chronische mastitis','nl',1,'2013-02-17 01:17:11',113037,0,1,NULL,NULL,'113037BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(145289,'chronische meningitis','nl',1,'2013-02-17 01:17:11',113038,0,1,NULL,NULL,'113038BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141835,'divertikel van de appendix','nl',1,'2013-02-17 01:17:11',113039,0,1,NULL,NULL,'113039BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(132216,'open fractuur van een falanx van een vinger','nl',1,'2013-02-17 01:17:11',113040,0,1,NULL,NULL,'113040BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(137311,'infectie door Mycobacterium kansasii','nl',1,'2013-02-17 01:17:11',113041,0,1,NULL,NULL,'113041BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(135511,'lupoides sycosis','nl',1,'2013-02-17 01:17:11',113042,0,1,NULL,NULL,'113042BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(145537,'choroidea litteken','nl',1,'2013-02-17 01:17:11',113043,0,1,NULL,NULL,'113043BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(138354,'hydrosalpinx','nl',1,'2013-02-17 01:17:11',113044,0,1,NULL,NULL,'113044BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(121691,'allergische rhinitis veroorzaakt door pollen','nl',1,'2013-02-17 01:17:11',113045,0,1,NULL,NULL,'113045BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(140434,'vrouwelijk heteroseksueel pseudopubertas praecox','nl',1,'2013-02-17 01:17:11',113046,0,1,NULL,NULL,'113046BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(130472,'periodieke fibro-adenosis van de mamma','nl',1,'2013-02-17 01:17:11',113047,0,1,NULL,NULL,'113047BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(127516,'retractiele testis','nl',1,'2013-02-17 01:17:11',113048,0,1,NULL,NULL,'113048BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(130454,'periostitis van de kaak','nl',1,'2013-02-17 01:17:11',113049,0,1,NULL,NULL,'113049BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141735,'constipatie bij lege artis geneesmiddelgebruik','nl',1,'2013-02-17 01:17:11',113050,0,1,NULL,NULL,'113050BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(127174,'Darier-Roussy sarcoïd','nl',1,'2013-02-17 01:17:11',113051,0,1,NULL,NULL,'113051BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(127950,'processus styloideus radii tendovaginitis','nl',1,'2013-02-17 01:17:11',113052,0,1,NULL,NULL,'113052BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(116382,'laat gevolg van brandwond','nl',1,'2013-02-17 01:17:11',113053,0,1,NULL,NULL,'113053BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(Line truncated
-INSERT INTO `concept_name` VALUES (122764,'ulceratief gumma door framboesia','nl',1,'2013-02-17 01:17:41',119747,0,1,NULL,NULL,'119747BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(136338,'juxta-articulaire framboesia noduli','nl',1,'2013-02-17 01:17:41',119748,0,1,NULL,NULL,'119748BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(136012,'latente framboesia','nl',1,'2013-02-17 01:17:41',119749,0,1,NULL,NULL,'119749BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134036,'gemengde pinta lesies','nl',1,'2013-02-17 01:17:41',119750,0,1,NULL,NULL,'119750BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(146523,'Candida paronychia','nl',1,'2013-02-17 01:17:41',119751,0,1,NULL,NULL,'119751BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(143084,'blastomycose van de huid','nl',1,'2013-02-17 01:17:41',119752,0,1,NULL,NULL,'119752BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141911,'gedissemineerde blastomycose','nl',1,'2013-02-17 01:17:41',119753,0,1,NULL,NULL,'119753BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(123083,'viscerale paracoccidioïdomycose','nl',1,'2013-02-17 01:17:41',119754,0,1,NULL,NULL,'119754BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(149943,'actinomycotisch mycetoom','nl',1,'2013-02-17 01:17:41',119755,0,1,NULL,NULL,'119755BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(158274,'penicillose','nl',1,'2013-02-17 01:17:41',119756,0,1,NULL,NULL,'119756BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(143066,'cutane schistosomiasis','nl',1,'2013-02-17 01:17:41',119757,0,1,NULL,NULL,'119757BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(142267,'diphyllobothriasis','nl',1,'2013-02-17 01:17:41',119758,0,1,NULL,NULL,'119758BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(157333,'strongyloidiasis diarree','nl',1,'2013-02-17 01:17:41',119759,0,1,NULL,NULL,'119759BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(141891,'gedissemineerde strongyloidiasis','nl',1,'2013-02-17 01:17:41',119760,0,1,NULL,NULL,'119760BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(151976,'intestinale angiostrongyliasis','nl',1,'2013-02-17 01:17:41',119761,0,1,NULL,NULL,'119761BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(5355,'toxoplasmose','nl',1,'2013-02-17 01:17:41',119762,0,1,NULL,NULL,'119762BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(124409,'chorioretinitis door Toxoplasma','nl',1,'2013-02-17 01:17:41',119763,0,1,NULL,NULL,'119763BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134037,'gemengde Pediculus infestatie van elk type Pediculosis humanis','nl',1,'2013-02-17 01:17:41',119764,0,1,NULL,NULL,'119764BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(150492,'acariasis','nl',1,'2013-02-17 01:17:41',119765,0,1,NULL,NULL,'119765BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(157327,'inwendige hirudiniasis','nl',1,'2013-02-17 01:17:41',119766,0,1,NULL,NULL,'119766BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(113025,'gevolgen van tuberculose','nl',1,'2013-02-17 01:17:41',119767,0,1,NULL,NULL,'119767BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(136044,'late gevolgen van tuberculose van de ademhalingsorganen','nl',1,'2013-02-17 01:17:41',119768,0,1,NULL,NULL,'119768BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(136054,'late gevolgen van tuberculose van het urogenitaal stelsel','nl',1,'2013-02-17 01:17:41',119769,0,1,NULL,NULL,'119769BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(136040,'late gevolgen van tuberculose van botten en gewrichten','nl',1,'2013-02-17 01:17:41',119770,0,1,NULL,NULL,'119770BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(152343,'laat gevolg van lepra','nl',1,'2013-02-17 01:17:41',119771,0,1,NULL,NULL,'119771BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(152350,'laat gevolg van virale hepatitis','nl',1,'2013-02-17 01:17:41',119772,0,1,NULL,NULL,'119772BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(115986,'maligne neoplasma van de nasofarynx','nl',1,'2013-02-17 01:17:41',119773,0,1,NULL,NULL,'119773BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134733,'ring van Waldeyer carcinoom','nl',1,'2013-02-17 01:17:41',119774,0,1,NULL,NULL,'119774BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134745,'maligne neoplasma van het bovenste derde deel van de slokdarm','nl',1,'2013-02-17 01:17:41',119775,0,1,NULL,NULL,'119775BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134817,'maligne neoplasma van het middelste derde deel van de slokdarm','nl',1,'2013-02-17 01:17:41',119776,0,1,NULL,NULL,'119776BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(134822,'maligne neoplasma van het onderste derde deel van de slokdarm','nl',1,'2013-02-17 01:17:41',119777,0,1,NULL,NULL,'119777BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(1348Line truncated
-INSERT INTO `concept_name` VALUES (162618,'Attended funeral in past 21 days','en',1,'2014-10-31 19:22:54',126493,0,1,NULL,NULL,'126493BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(162619,'Travelled outside village in past 21 days','en',1,'2014-10-31 19:23:57',126494,0,1,NULL,NULL,'126494BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(162668,'Bleeding site','en',1,'2014-11-02 01:51:51',126495,0,1,NULL,NULL,'126495BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162669,'Lung','en',1,'2014-11-02 01:57:01',126496,0,1,NULL,NULL,'126496BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162670,'Stomach','en',1,'2014-11-02 01:58:30',126497,0,1,NULL,NULL,'126497BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162671,'Intestine','en',1,'2014-11-02 02:00:00',126498,0,1,NULL,NULL,'126498BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162672,'Nasopharynx','en',1,'2014-11-02 02:00:51',126499,0,1,NULL,NULL,'126499BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162673,'Vagina','en',1,'2014-11-02 02:01:58',126500,0,1,NULL,NULL,'126500BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162674,'Artemisinin-based Combination Therapy (ACT)','en',1,'2014-11-02 02:12:19',126501,0,1,NULL,NULL,'126501BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162675,'Target intake volume over next 24 hours (mL)','en',1,'2014-11-03 11:53:50',126502,0,1,NULL,NULL,'126502BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162676,'Symptom progression','en',1,'2014-11-03 12:05:04',126503,0,1,NULL,NULL,'126503BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162677,'Improved','en',1,'2014-11-03 12:05:47',126504,0,1,NULL,'','126504BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(162677,'Better','en',1,'2014-11-03 12:05:47',126505,0,1,NULL,NULL,'126505BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162678,'Worse','en',1,'2014-11-03 12:07:17',126506,0,1,NULL,NULL,'126506BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162679,'Unchanged','en',1,'2014-11-03 12:08:23',126507,0,1,NULL,NULL,'126507BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162679,'No change','en',1,'2014-11-03 12:08:23',126508,0,1,NULL,'','126508BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(162676,'Change in symptoms','en',1,'2014-11-03 12:09:42',126509,0,1,NULL,'','126509BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(162680,'Recovery ward','en',1,'2014-11-03 12:11:59',126510,0,1,NULL,NULL,'126510BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162681,'Suspect ward','en',1,'2014-11-03 12:12:55',126511,0,1,NULL,NULL,'126511BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162682,'Location patient discharged from','en',1,'2014-11-03 12:15:35',126512,0,1,NULL,NULL,'126512BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162683,'Location of burial','en',1,'2014-11-03 12:21:09',126513,0,1,NULL,NULL,'126513BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162684,'Confirmed negative Ebola virus test','en',1,'2014-11-03 12:24:09',126514,0,1,NULL,NULL,'126514BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162685,'Cause de référence au foyer maternel','fr',1,'2014-11-03 23:29:57',126515,0,1,NULL,NULL,'126515BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162685,'Koz ki fè yo refere’l nan foye matènèl la','ht',1,'2014-11-03 23:29:57',126516,0,1,NULL,NULL,'126516BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162685,'Reason for referral to maternal waiting home','en',1,'2014-11-03 23:29:57',126517,0,1,NULL,NULL,'126517BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162685,'Maternal danger sign causing admission to maternal waiting home','en',1,'2014-11-03 23:29:57',126518,0,1,NULL,'','126518BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(162686,'Antimalarial treatment plan','en',1,'2014-11-04 00:57:28',126519,0,1,NULL,NULL,'126519BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162687,'Antibiotic treatment plan','en',1,'2014-11-04 00:59:20',126520,0,1,NULL,NULL,'126520BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162688,'Pain management plan','en',1,'2014-11-04 01:01:48',126521,0,1,NULL,NULL,'126521BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162689,'District','en',1,'2014-11-04 01:04:39',126522,0,1,NULL,NULL,'126522BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162690,'Chiefdom','en',1,'2014-11-04 01:06:20',126523,0,1,NULL,NULL,'126523BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162691,'Location of funeral','en',1,'2014-11-04 01:10:31',126524,0,1,NULL,NULL,'126524BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162692,'Discharge medications provided','en',1,'2014-11-04 01:13:23',126525,0,1,NULL,NULL,'126525BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(162693,'Life threatening severity','en',1,'2014-11-07 20:12:47',126526,0,1,NULL,NULL,'126526BBBBBBBBBBBBLine truncated
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01:02:54',139475,0,1,NULL,'','139475BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(163839,'Thyroglossal sinus','en',1,'2016-08-04 01:02:54',139476,0,1,NULL,NULL,'139476BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163840,'Tongue cyst','en',1,'2016-08-04 01:04:23',139477,0,1,NULL,'','139477BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(163840,'Cyst of tongue','en',1,'2016-08-04 01:04:23',139478,0,1,NULL,NULL,'139478BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163841,'Uncircumcised (male)','en',1,'2016-08-04 01:07:50',139479,0,1,NULL,'','139479BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(163841,'Uncircumcised penis','en',1,'2016-08-04 01:07:50',139480,0,1,NULL,NULL,'139480BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163842,'Obstruction of pelviureteric junction','en',1,'2016-08-04 01:08:59',139481,0,1,NULL,NULL,'139481BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163842,'UPJ obstruction','en',1,'2016-08-04 01:08:59',139482,0,1,NULL,'','139482BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(163843,'Urachal sinus','en',1,'2016-08-04 01:09:36',139483,0,1,NULL,NULL,'139483BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163844,'Perianal sinus','en',1,'2016-08-04 01:10:19',139484,0,1,NULL,NULL,'139484BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163845,'Postoperative wound sinus','en',1,'2016-08-04 01:11:14',139485,0,1,NULL,NULL,'139485BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(135486,'Lymphovascular Malformation','en',1,'2016-08-04 01:11:46',139486,0,1,NULL,NULL,'139486BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(163846,'Acquired skull defect','en',1,'2016-08-04 01:16:05',139487,0,1,NULL,NULL,'139487BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163847,'Displacement of biliary stent','en',1,'2016-08-04 01:16:55',139488,0,1,NULL,NULL,'139488BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163847,'Misplaced biliary stent','en',1,'2016-08-04 01:16:55',139489,0,1,NULL,'','139489BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(163848,'Omphalomesenteric fistula','en',1,'2016-08-04 01:17:50',139490,0,1,NULL,'','139490BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(163848,'Patent vitelline duct','en',1,'2016-08-04 01:17:50',139491,0,1,NULL,NULL,'139491BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163849,'Glioma of brainstem','en',1,'2016-08-04 01:18:25',139492,0,1,NULL,NULL,'139492BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163850,'Presternal ciliated cyst','en',1,'2016-08-04 01:18:58',139493,0,1,NULL,NULL,'139493BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163851,'Quadriceps muscle wasting','en',1,'2016-08-04 01:19:38',139494,0,1,NULL,NULL,'139494BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163796,'VP shunt exposure','en',1,'2016-08-04 01:22:11',139495,1,1,NULL,'incorrect','139495BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(163852,'VP shunt exposure','en',1,'2016-08-04 01:23:13',139496,0,1,NULL,NULL,'139496BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163852,'Ventriculoperitoneal shunt exposure','en',1,'2016-08-04 01:23:43',139497,0,1,NULL,'','139497BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(163853,'VP shunt migration','en',1,'2016-08-04 01:25:27',139498,0,1,NULL,NULL,'139498BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163853,'Ventriculoperitoneal shunt migration','en',1,'2016-08-04 01:25:27',139499,0,1,NULL,'','139499BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(163854,'VP shunt disconnection','en',1,'2016-08-04 01:26:14',139500,0,1,NULL,NULL,'139500BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163854,'Ventriculoperitoneal shunt disconnection','en',1,'2016-08-04 01:26:14',139501,0,1,NULL,'','139501BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB',NULL,0,NULL,1),(163855,'Perinatal defect of skull','en',1,'2016-08-04 01:27:12',139502,0,1,NULL,NULL,'139502BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(163855,'Perinatal skull defect','en',1,'2016-08-04Line truncated
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23:47:53',146323,0,1,NULL,NULL,'146323BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166780,'Composants solides avec le plus grand diamètre < 7 mm','fr',1,'2021-10-10 23:47:53',146324,0,1,NULL,NULL,'146324BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166781,'Présence d\'ombres acoustiques','fr',1,'2021-10-10 23:50:19',146325,0,1,NULL,NULL,'146325BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166781,'Presence of acoustic shadows','en',1,'2021-10-10 23:50:19',146326,0,1,NULL,NULL,'146326BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166782,'Tumeur multiloculaire lisse de plus grand diamètre < 100 mm','fr',1,'2021-10-10 23:51:28',146327,0,1,NULL,NULL,'146327BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166782,'Smooth multilocular tumor with largest diameter < 100 mm','en',1,'2021-10-10 23:51:28',146328,0,1,NULL,NULL,'146328BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166783,'Blood flow 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00:13:33',146335,0,1,NULL,NULL,'146335BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166786,'At least four papillary structures present','en',1,'2021-10-11 00:13:33',146336,0,1,NULL,NULL,'146336BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166787,'Smooth multilocular tumor with largest diameter > 100 mm','en',1,'2021-10-11 00:14:16',146337,0,1,NULL,NULL,'146337BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166787,'Tumeur multiloculaire lisse de plus grand diamètre > 100 mm','fr',1,'2021-10-11 00:14:16',146338,0,1,NULL,NULL,'146338BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166788,'Très fort flux sanguin','fr',1,'2021-10-11 00:14:53',146339,0,1,NULL,NULL,'146339BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166788,'Very strong blood flow','en',1,'2021-10-11 00:14:53',146340,0,1,NULL,NULL,'146340BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166789,'Position of kidney','en',1,'2021-10-11 00:16:46',146341,0,1,NULL,NULL,'146341BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166790,'Reconstruction procedure','en',1,'2021-10-11 00:21:48',146342,0,1,NULL,NULL,'146342BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166790,'Procedure reconstructive','fr',1,'2021-10-11 00:21:48',146343,0,1,NULL,NULL,'146343BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166791,'Lambeau local','fr',1,'2021-10-11 00:25:00',146344,0,1,NULL,NULL,'146344BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166791,'Reconstruction with local flap','en',1,'2021-10-11 00:25:00',146345,0,1,NULL,NULL,'146345BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166792,'Harvest of axial pattern flap of skin','en',1,'2021-10-11 02:00:27',146346,0,1,NULL,NULL,'146346BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166792,'Création d\'un lambeau axial','fr',1,'2021-10-11 02:00:27',146347,0,1,NULL,NULL,'146347BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLY_SPECIFIED',1,NULL,1),(166793,'Removal of external fixation device','en',1,'2021-10-11 02:07:48',146348,0,1,NULL,NULL,'146348BBBBBBBBBBBBBBBBBBBBBBBBBBBBBB','FULLYLine truncated
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-UNLOCK TABLES;
-
---
--- Table structure for table `concept_reference_source`
---
-
-DROP TABLE IF EXISTS `concept_reference_source`;
-/*!40101 SET @saved_cs_client     = @@character_set_client */;
-/*!40101 SET character_set_client = utf8 */;
-CREATE TABLE `concept_reference_source` (
-  `concept_source_id` int(11) NOT NULL AUTO_INCREMENT,
-  `name` varchar(50) NOT NULL DEFAULT '',
-  `description` text NOT NULL,
-  `hl7_code` varchar(50) DEFAULT NULL,
-  `creator` int(11) NOT NULL DEFAULT '0',
-  `date_created` datetime NOT NULL DEFAULT '1000-01-01 00:00:00',
-  `retired` tinyint(1) NOT NULL DEFAULT '0',
-  `retired_by` int(11) DEFAULT NULL,
-  `date_retired` datetime DEFAULT NULL,
-  `retire_reason` varchar(255) DEFAULT NULL,
-  `uuid` char(38) NOT NULL,
-  `unique_id` varchar(250) DEFAULT NULL,
-  `date_changed` datetime DEFAULT NULL,
-  `changed_by` int(11) DEFAULT NULL,
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This standard provides for all routes of administration for drugs. \r\n\r\nSource.  COMIS Reference table (which is used by the Drug Product Reference File to generate Approved Drug Products with Therapeutic Equivalence Evaluations (a.k.a. \"The Orange Book\")), and the Drug Line truncated
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00:00:00',NULL,1,0,1,NULL,NULL,'850b1ee4-ff41-3d35-a04b-ee484d1fdcd6'),(86794,3,NULL,'Y41.8',NULL,NULL,1,'2010-04-25 00:00:00',NULL,1,0,1,NULL,NULL,'a4a64d65-6f98-3dba-b491-d594e1f32a14'),(86806,3,NULL,'Y42.0',NULL,NULL,1,'2010-04-25 00:00:00',NULL,1,0,1,NULL,NULL,'6b055363-95e2-34df-87db-4a399c21d364'),(86809,3,NULL,'Y42.1',NULL,NULL,1,'2010-04-25 00:00:00',NULL,1,0,1,NULL,NULL,'717781a2-e7a4-33b2-9d45-b93169deb89e'),(86812,3,NULL,'Y42.2',NULL,NULL,1,'2010-04-25 00:00:00',NULL,1,0,1,NULL,NULL,'0e279111-cf83-34c2-965f-23ef59750c69'),(86816,3,NULL,'Y42.3',NULL,NULL,1,'2010-04-25 00:00:00',NULL,1,0,1,NULL,NULL,'b2c0d97c-ff79-36a1-a7c9-3dbb6abf8b76'),(86823,3,NULL,'Y42.5',NULL,NULL,1,'2010-04-25 00:00:00',NULL,1,0,1,NULL,NULL,'56e1c5a0-64c0-31ba-b7fa-eb479c63403b'),(86831,3,NULL,'Y42.6',NULL,NULL,1,'2010-04-25 00:00:00',NULL,1,0,1,NULL,NULL,'3808d390-0eed-3014-a62d-42e6a67b8cc4'),(86832,3,NULL,'Y42.7',NULL,NULL,1,'2010-04-25 00:00:00',NULL,1,0,1,NULL,NULL,'78037d25-cb6d-3f5d-b2db-3b217f4ad651'),(86835,3,NULL,'Y42.8',NULL,NULL,1,'2010-04-25 00:00:00',NULL,1,0,1,NULL,NULL,'10754106-c77a-3ba2-a558-bf5bd6fa9963'),(86843,3,NULL,'Q95.8',NULL,NULL,1,'2010-04-25 00:00:00',NULL,1,0,1,NULL,NULL,'823acea7-e235-385e-8824-7be9759d831e'),(86845,3,NULL,'Q96.0',NULL,NULL,1,'2010-04-Line truncated
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00:00:00',NULL,1,0,1,NULL,NULL,'7bde5dbe-cebf-32b5-8257-26076688717f'),(127661,4,NULL,'71468',NULL,NULL,1,'2010-04-27 00:00:00',NULL,1,0,1,NULL,NULL,'f903e3fa-c65e-30e2-80c9-80043aed5643'),(127662,4,NULL,'1512',NULL,NULL,1,'2010-04-27 00:00:00',NULL,1,0,1,NULL,NULL,'a5c36094-7013-3736-8f1b-f4fbc3e9a1ed'),(127663,4Line truncated
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