Server updates

First pass at config variable consolidation in .env
Fixes
2026-10-27 09:56:08 +00:00 · 2023-07-12 16:04:09 +00:00 · 2022-11-08 01:34:22 +00:00 · 2022-10-17 14:11:01 -07:00 · 2022-09-30 15:32:12 -07:00 · 2022-09-30 15:08:56 -07:00
20 changed files with 22836 additions and 31 deletions
@@ -0,0 +1,34 @@
+ISANTEPLUS_VERSION=v2.3.7
+ISANTEPLUS_DB_VERSION=v2.2.1
+
+# Global
+TZ=America/Los_Angeles
+RESTART=unless-stopped
+# COMPOSE_PROJECT_NAME="hie-botswana"
+ROOT_URL=uwdigi.org
+
+# Traefik
+VERSION=latest
+LOG=DEBUG
+
+# ACME DNS-01 challenge
+PROVIDER=route53
+RESOLVER=1.1.1.1:53,8.8.8.8:53
+EMAIL=pmanko@uw.edu
+
+# ISANTEPLUS 
+ADMIN_PASSWORD=Admin123
+
+#ISANTEPLUS_DB
+DB_SERVER_NAME=isanteplus-mysql
+DB_HOST_NAME=isanteplus-mysql
+DB_PORT=3306
+DB_ROOT_USER=root
+DB_ROOT_PASSWORD=debezium
+DB_USER=mysqluser
+DB_PASSWORD=mysqlpw
+DB_NAME=openmrs
+DB_BINLOG_SERVER_ID=223344
+DB_BINLOG_EXPIRE_DAYS=1
+
+#
@@ -0,0 +1,61 @@
+name: CI
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+  release:
+    types: [published]
+  workflow_dispatch:
+env:
+  IPLUS_DB_PW: mysqlpw
+jobs:
+  CI:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v1
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v1
+
+      - name: Pull containers
+        run: docker-compose pull
+      
+      - name: Cache containers
+        uses: satackey/action-docker-layer-caching@v0.0.11
+        continue-on-error: true
+
+      - name: Start all containers
+        run: docker-compose up -d
+      
+      - name: Sleep for 120 seconds
+        run: sleep 120
+        shell: bash
+
+      - name: Display docker logs for openhim config
+        run: docker-compose logs openhim-config
+
+      - name: Show docker logs for isanteplus
+        run: docker logs isanteplus
+
+      - name: Wait For OpenMRS
+        run: docker-compose -f test.docker-compose.yml up --exit-code-from wait wait
+
+      - name: Restart streaming pipeline
+        run: docker-compose up -d --force-recreate streaming-pipeline
+      
+      - name: Sleep for 30 seconds
+        run: sleep 30
+        shell: bash
+      
+      - name: Run Basic API Tests (https://www.postman.com/itechuw/workspace/haiti-sedish/collection/1525496-192e3c9f-caea-4056-8077-b67af442f01c)
+        env:
+          POSTMAN_COLLECTION: https://www.getpostman.com/collections/22647ce67595a103f9c1
+        run: docker-compose -f test.docker-compose.yml up --exit-code-from newman newman
+               
+      - name: Run iSantePlus QA Framework (https://github.com/IsantePlus/isanteplus-qaframework)
+        run: docker-compose -f test.docker-compose.yml up --exit-code-from qa qa
+        continue-on-error: false
+      
@@ -0,0 +1,11 @@
+{
+	"name": "ci",
+	"values": [
+		{
+			"key": "isanteplus-url",
+			"value": "http://isanteplus:8080",
+			"enabled": true
+		}
+	],
+	"_postman_variable_scope": "environment"
+}
@@ -1,2 +1,48 @@
 # HaitiHealthBox
 An all-inclusive health information system setup for health facilities in Haiti
+
+# Setup Instructions
+
+## Step One: Install Docker
+See https://docs.docker.com/engine/install/
+
+Test to make sure both of these commands work:
+```sh
+docker -v
+docker compose version
+```
+
+**Note: If your docker version does not support the `docker compose` syntax, 
+install `docker-compose` using the instructions here: https://docs.docker.com/compose/install/**
+
+
+## Step Two: Get HaitiHealthBox from GitHub
+
+Run the following command:
+```sh
+git clone https://github.com/I-TECH-UW/HaitiHealthBox.git
+```
+
+If you want to use a specific version from the [version list](https://github.com/I-TECH-UW/HaitiHealthBox/releases), you can check out the corresponding tag. For example, to use version `0.0.0-alpha`, run:
+```sh
+git checkout v0.0.0-alpha
+```
+
+Otherwise, you can use the latest `main` branch that is the default. 
+
+## Step Three: Set some configurations
+Set some temporary variables to store your desired iSantePlus Database and iSantePlus admin passwords:
+
+```sh
+export IPLUS_ADMIN_PW=<your-password>
+export IPLUS_DB_PW=<your-password>
+```
+## Step Four: Boot up Docker Enviornment
+Navigate to the `HaitiHealthBox` directory on your machine and run the following command:
+```sh
+docker-compose up -d
+```
+
+## Step Five: Register instance in Sedish
+
+## Step Six: test SHR pipe
@@ -5,39 +5,91 @@ services:
  # reverse proxy
  ###
  traefik:
-    image: traefik:v2.6.1
+    image: traefik:${VERSION}
    container_name: traefik
+    restart: ${RESTART}
    ports:
-      - '80:80'
-      - '443:443'
-      - '8080:8080'
+      - "80:80"
+      - "443:443"
    volumes:
-      - ./certs/:/etc/certs/       
+      - ./volume/networking/certs.yml:/etc/traefik/dynamic_conf/certs.yml
      - /var/run/docker.sock:/var/run/docker.sock
-      - ./configs/conf.yaml:/conf/conf.yaml  
-      - ./configs/traefik.yaml:/etc/traefik/traefik.yaml
-    
+      - certs:/etc/certs
+    command: 
+      - --api.insecure=false
+      - --api.dashboard=true
+      - --providers.docker=true 
+      - --providers.docker.exposedbydefault=false
+      - --providers.file.watch=true
+      - --providers.file.directory=/etc/traefik/dynamic_conf
+      - --log.level=${LOG}
+      - --entrypoints.web.address=:80 
+      - --entrypoints.web-secure.address=:443
+      - --entrypoints.web.http.redirections.entrypoint.to=web-secure
+      - --entrypoints.web.http.redirections.entrypoint.scheme=https
+      - --serversTransport.insecureSkipVerify=true
+
+    labels:
+      - 'traefik.enable=true'
+      - 'traefik.docker.network=haitihealthbox_local_facility'
+      - "traefik.http.routers.api.rule=Host(`traefik.${ROOT_URL}`)"
+      - "traefik.http.routers.api.service=api@internal"
+      - 'traefik.http.routers.api.tls=true'
+      - 'traefik.http.routers.api.entrypoints=web-secure'
+    networks:
+      - local_facility
+    environment: 
+      - TZ
+  
+  ###
+  # Certs
+  ### 
+  certbot:
+    image:  ghcr.io/i-tech-uw/certbot-route53-cron:pr-2
+    container_name: certbot
+    environment:
+    - AWS_ACCESS_KEY_ID
+    - AWS_SECRET_ACCESS_KEY
+    - ROOT_URL=${ROOT_URL-localhost}
+    - EMAIL=${EMAIL-example@email.org}
+    volumes:
+    - certs:/etc/letsencrypt/
+    - letsencrypt:/var/lib/letsencrypt
+    networks:
+    - local_facility
+
  ###
  # iSantePlus Server
  ###
  isanteplus:
    container_name: isanteplus
    hostname: isanteplus
-    image: ghcr.io/isanteplus/docker-isanteplus-server:v2.3.0
+    image: ghcr.io/isanteplus/docker-isanteplus-server:${ISANTEPLUS_VERSION-latest}
    restart: unless-stopped
-    env_file:
-      - ./isanteplus.env
+    environment:
+      - OMRS_CONFIG_CREATE_TABLES=false
+      - OMRS_CONFIG_ADD_DEMO_DATA=false
+      - OMRS_CONFIG_CONNECTION_URL=jdbc:mysql://${DB_HOST_NAME-isanteplus-mysql}:${DB_PORT-3306}/openmrs?autoReconnect=true
+      - OMRS_CONFIG_HAS_CURRENT_OPENMRS_DATABASE=true
+      - OMRS_JAVA_SERVER_OPTS="-Dfile.encoding=UTF-8 -server -Djava.security.egd=file:/dev/./urandom -Djava.awt.headless=true -Djava.awt.headlesslib=true"
+      - OMRS_CONFIG_CONNECTION_USERNAME=${DB_USER-mysqluser}
+      - OMRS_CONFIG_CONNECTION_PASSWORD=${DB_PASSWORD-mysqlpw}
+      - OMRS_CONFIG_CONNECTION_SERVER=isanteplus-mysql
+      - OMRS_DEV_DEBUG_PORT=1044    
    volumes:
      - /openmrs/data
      - ./custom_modules:/custom_modules
-      - ./dist:/openmrs/data/frontend
    logging:
      driver: "json-file"
      options:
        max-size: "10m"
+    ports:
+      - 8080:8080
+    networks:
+      - local_facility

  isanteplus-mysql:
-    image: ghcr.io/isanteplus/docker-isanteplus-db:v2.2.1
+    image: ghcr.io/isanteplus/docker-isanteplus-db:${ISANTEPLUS_DB_VERSION-latest}
    command: mysqld --character-set-server=utf8 --collation-server=utf8_general_ci --sql_mode=""
    restart: unless-stopped
    container_name: isanteplus-mysql
@@ -45,17 +97,40 @@ services:
    healthcheck:
      test: "exit 0"
    environment:
-      - MYSQL_DATABASE=openmrs
-      - MYSQL_ROOT_PASSWORD=debezium
-      - MYSQL_USER=mysqluser
-      - MYSQL_PASSWORD=mysqlpw
+      - MYSQL_DATABASE=${DB_NAME-openmrs}
+      - MYSQL_ROOT_PASSWORD=${DB_ROOT_PASSWORD-debezium}
+      - MYSQL_USER=${DB_USER-mysqluser}
+      - MYSQL_PASSWORD=${DB_PASSWORD-mysqlpw}
      - MYSQL_ROOT_HOST=% # Allow docker containers to connect to mysql
    volumes:
-      - ./mysql.cnf:/etc/mysql/conf.d/custom.cnf # mysql config preconfigured to allow binlog/debezium
+      - ./volume/database/isanteplus/mysql.cnf:/etc/mysql/conf.d/custom.cnf # mysql config preconfigured to allow binlog/debezium
      - /var/lib/mysql
-    ports:
-    - "3306:3306"
-
+    networks:
+      - local_facility
+  
+  streaming-pipeline: 
+    image: ghcr.io/i-tech-uw/openmrs-fhir-analytics/streaming-binlog:latest
+    container_name: streaming-pipeline
+    healthcheck:
+      test: "exit 0"
+    volumes:
+      - ./configs/streaming-pipeline/config.json:/deployments/config.json
+      # data is the directory which you want to persist the generated parquet files
+      - ./tmp:/tmp
+    environment:
+      - OPENMRS_URL=http://isanteplus:8080/openmrs
+      - OPENMRS_USERNAME=admin
+      - OPENMRS_PASSWORD=${IPLUS_ADMIN_PW-Admin123}
+      - SINK_URL=https://openhim.sedish-haiti.org/SHR/fhir
+      - SINK_USERNAME=${OPENHIM_STREAMING_CLIENT-streaming}
+      - SINK_PASSWORD=${OPENHIM_STREAMING_PW-streaming}
+      - JDBC_FETCH_SIZE=10000
+      - JDBC_MAX_POOL_SIZE=50
+      - JDBC_INITIAL_POOL_SIZE=10
+      - JDBC_DRIVER_CLASS=com.mysql.cj.jdbc.Driver
+      # the 2 variable below should be same as volume mappings above
+      - PARQUET_PATH=/tmp
+      - FHIR_DEBEZIUM_CONFIG_PATH=/deployments/config.json
  ###
  # OpenHIM
  ###
@@ -73,10 +148,47 @@ services:
      interval: 20s
      timeout: 20s
      retries: 2
-    networks:
-      - hie
    volumes:
-      - ./configs/openhim/healthcheck.js:/healthcheck.js
+      - ./volume/openhim/healthcheck.js:/healthcheck.js
+      - ./volume/openhim/config.json:/app/config/default.json
+      - certs:/etc/certs
+    networks:
+      - local_facility
+    ports:
+      - 8090:8080
+      - 5000:5000
+      - 5001:5001
+    labels:
+      - 'traefik.enable=true'
+      - 'traefik.docker.network=haitihealthbox_local_facility'
+      
+      - 'traefik.http.services.openhim-api.loadbalancer.server.port=8080'
+      - 'traefik.http.services.openhim-api.loadbalancer.server.scheme=https'
+      - 'traefik.http.routers.openhim-api.service=openhim-api'
+      - 'traefik.http.routers.openhim-api.tls=true'
+      - 'traefik.http.routers.openhim-api.entrypoints=web-secure'
+      - 'traefik.http.routers.openhim-api.rule=Host(`openhim-api.${ROOT_URL}`)'
+
+      - 'traefik.http.services.openhim-ssl.loadbalancer.server.port=5000'
+      - 'traefik.http.services.openhim-ssl.loadbalancer.server.scheme=https'
+      - 'traefik.http.routers.openhim-ssl.service=openhim-ssl'
+      - 'traefik.http.routers.openhim-ssl.tls=true'
+      - 'traefik.http.routers.openhim-ssl.entrypoints=web-secure'
+      - 'traefik.http.routers.openhim-ssl.rule=Host(`${ROOT_URL}`) && PathPrefix(`/openhim-ssl`)'
+      - 'traefik.http.routers.openhim-ssl.middlewares=openhim-ssl'      
+      - 'traefik.http.middlewares.openhim-ssl.stripprefix.prefixes=/openhim-ssl'
+      - 'traefik.http.middlewares.openhim-ssl.stripprefix.forceSlash=false'
+
+      - 'traefik.http.services.openhim-http.loadbalancer.server.port=5001'
+      - 'traefik.http.services.openhim-http.loadbalancer.server.scheme=http'
+      - 'traefik.http.routers.openhim-http.service=openhim-http'
+      - 'traefik.http.routers.openhim-http.tls=false'
+      - 'traefik.http.routers.openhim-http.entrypoints=web'
+      - 'traefik.http.routers.openhim-http.rule=Host(`${ROOT_URL}`) && PathPrefix(`/openhim-http`)'
+      - 'traefik.http.routers.openhim-http.middlewares=openhim-http'      
+      - 'traefik.http.middlewares.openhim-http.stripprefix.prefixes=/openhim-http'
+      - 'traefik.http.middlewares.openhim-http.stripprefix.forceSlash=false'
+

  openhim-console:
    container_name: openhim-console
@@ -84,24 +196,30 @@ services:
    image: jembi/openhim-console:latest
    restart: unless-stopped
    volumes:
-      - ./configs/openhim-console/default.json:/usr/share/nginx/html/config/default.json
+       - ./volume/openhim/console.json:/usr/share/nginx/html/config/default.json
    healthcheck:
      test: "curl -sS http://openhim-console || exit 1"
      interval: 10s
      timeout: 60s
      retries: 3
+    ports: 
+      - 3000:80
    networks:
-      - hie
-
+      - local_facility
+    labels:
+      - 'traefik.enable=true'
+      - 'traefik.docker.network=haitihealthbox_local_facility'
+      - 'traefik.http.routers.openhim-console.tls=true'
+      - 'traefik.http.routers.openhim-console.entrypoints=web-secure'
+      - 'traefik.http.routers.openhim-console.rule=Host(`${ROOT_URL}`)'
  # Loads Default OpenHIM Config
  openhim-config:
    container_name: openhim-config
    image: ghcr.io/i-tech-uw/openhim-config:v0.0.0
    volumes:
-      - ./configs/openhim/test-openhim-config.json:/app/test-openhim-config.json
+      - ./volume/openhim/initial-config.json:/app/test-openhim-config.json
    networks:
-      - hie
-
+      - local_facility
  mongo-db:
    container_name: mongo-db
    image: mongo:3.4
@@ -109,4 +227,102 @@ services:
      - /data/db
    restart: unless-stopped
    networks:
-      - hie
+      - local_facility
+  ####
+  # OpenELIS
+  ####
+  certs:
+    container_name: oe-certs
+    image: ghcr.io/i-tech-uw/certgen:main
+    restart: always
+    environment:
+      - KEYSTORE_PW="kspass"
+      - TRUSTSTORE_PW="tspass"
+    volumes:
+      - cert-volume:/etc/openelis-global
+    networks:
+      - local_facility
+  database:
+    container_name: openelisglobal-database
+    image: postgres:9.5
+    ports:
+      - "15432:5432"
+    restart: always
+    env_file:
+      - ./volume/database/database.env
+    volumes:
+      # preserves the database between containers
+      - db-data:/var/lib/postgresql/data
+        # files here will run on install
+      - ./volume/database/dbInit:/docker-entrypoint-initdb.d
+    networks:
+      - local_facility
+    healthcheck:
+      test: ["CMD", "pg_isready", "-q", "-d", "clinlims", "-U", "clinlims"]
+      timeout: 45s
+      interval: 10s
+      retries: 10
+
+  oe.openelis.org:
+    container_name: openelisglobal-webapp
+    image: ghcr.io/i-tech-uw/openelis-global-2@sha256:abc0916a3c61176571eb2e771cfeb399d0f29c9e02857879d0e12471d3ebf8f3
+    depends_on:
+      - database
+    ports:
+      #- "8095:8080"
+      - "8443:8443"
+    restart: always
+    environment:
+      - TZ=Africa/Nairobi
+        # context.xml doesn't seem to be able to pick up environment variables directly, so we are passing them in as CATALINA_OPTS
+      - CATALINA_OPTS= -Ddatasource.url=jdbc:postgresql://database:5432/clinlims -Ddatasource.username=clinlims -Ddatasource.password=clinlims
+    volumes:
+      - cert-volume:/etc/openelis-global
+      # -  openelis-plugins-data:/var/lib/openelis-global/plugins
+      - ./volume/tomcat/oe_server.xml:/usr/local/tomcat/conf/server.xml
+    secrets:
+      - source: datasource.password
+      - source: common.properties
+    networks:
+      - local_facility
+
+  fhir.openelis.org:
+    container_name: external-fhir-api
+    image: hapiproject/hapi:v5.5.1
+    # ports:
+    # - "8081:8080"
+    restart: always
+    environment:
+      - hapi.fhir.auto_create_placeholder_reference_targets=true
+      - hapi.fhir.allow_placeholder_references=true
+      - hapi.fhir.allow_external_references=true
+    networks:
+      - local_facility
+
+  fhir.openelis.org.remote:
+    container_name: openelis-remote-source
+    image: hapiproject/hapi:v5.5.1
+    ports:
+      - "8081:8080"
+    restart: always
+    environment:
+      - hapi.fhir.auto_create_placeholder_reference_targets=true
+      - hapi.fhir.allow_placeholder_references=true
+      - hapi.fhir.allow_external_references=true
+    networks:
+      - local_facility
+
+secrets:
+  datasource.password:
+    file: ./volume/properties/datasource.password
+  common.properties:
+    file: ./volume/properties/common.properties
+
+volumes:
+  db-data:
+  cert-volume:
+  certs:
+  letsencrypt:
+
+networks:
+  local_facility:
@@ -0,0 +1,48 @@
+version: "3.8"
+
+services:  
+  # QA Framework
+  qa:
+    image: ghcr.io/isanteplus/isanteplus-qaframework:latest
+    container_name: qa
+    environment:
+      - ISANTEPLUS_URL=http://isanteplus:8080/openmrs
+      - ISANTEPLUS_USER=admin
+      - ISANTEPLUS_PW=Admin123
+      - REMOTE_URL_CHROME=http://chrome:4444/wd/hub
+      - TEST_OPTIONS="-Dcucumber.filter.tags=@login"
+    networks:
+      - local_facility
+
+  chrome:
+    image: selenium/standalone-chrome:latest
+    hostname: chrome
+    container_name: chrome
+    ports:
+      - "4444:4444"
+      - "7900:7900"
+    networks:
+      - local_facility
+  # Newman Tests
+  newman:
+    image: postman/newman
+    volumes:
+      - ./.postman:/.postman
+    entrypoint: newman run $POSTMAN_COLLECTION -e /.postman/env.json --insecure --timeout-request 20000 --delay-request 1000
+    networks:
+      - local_facility
+
+  wait:
+    container_name: wait
+    image: ghcr.io/i-tech-uw/wait-for-openmrs-action:v0.4.0 
+    command:
+    - "http://isanteplus:8080/openmrs"
+    - "20" 
+    - "10000"
+    networks:
+      - local_facility
+
+networks:
+  local_facility:
+    external: true
+    name: haitihealthbox_local_facility
@@ -0,0 +1,4 @@
+POSTGRES_USER=postgres
+POSTGRES_PASSWORD=admin
+POSTGRES_DB=clinlims
+POSTGRES_INITDB_ARGS="--auth-host=md5"
@@ -0,0 +1,4 @@
+
+CREATE USER clinlims PASSWORD 'clinlims';
+CREATE USER admin SUPERUSER PASSWORD 'cPATaahXJlSj';
+ALTER DATABASE clinlims OWNER TO clinlims;
@@ -0,0 +1,6 @@
+DELETE from clinlims.site_information where name = 'siteNumber';
+INSERT INTO clinlims.site_information( id, lastupdated, "name", description, "value") VALUES ( nextval('clinlims.site_information_seq'), now(), 'siteNumber', 'The site number of the this lab', 'DEV01' );
+
+DELETE from clinlims.site_information where name = 'Accession number prefix';
+INSERT INTO clinlims.site_information( id, lastupdated, "name", description, "value") VALUES ( nextval('clinlims.site_information_seq'), now(), 'Accession number prefix', 'Prefix for SITEYEARNUM format.  Can not be changed if there are samples', 'DEV01' );
+
@@ -0,0 +1,246 @@
+{
+  "debeziumConfigurations": {
+    "databaseServerName" : "$DB_SERVER_NAME",
+    "databaseHostName" : "$DB_HOST_NAME",
+    "databaseServerId" : "$DB_SERVER_ID",
+    "databasePort" : "$DB_PORT",
+    "databaseUser" : "$DB_USER",
+    "databasePassword" : "$DB_PASSWORD",
+    "databaseName" : "$DB_NAME",
+    "databaseOffsetStorage" : "data/offset.dat",
+    "databaseHistory" : "data/dbhistory.dat",
+    "snapshotMode" : "schema_only"
+   },
+  "eventConfigurations": {
+    "location": {
+      "enabled": "false",
+      "title": "Location",
+      "parentTable": "location",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/location/{uuid}?v=full",
+        "fhir": "/Location/{uuid}"
+      }
+    },
+    "concept": {
+      "enabled": "false",
+      "title": "Concept",
+      "parentTable": "concept",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/concept/{uuid}?v=full"
+      }
+    },
+    "cohort": {
+      "enabled": "true",
+      "title": "Cohort",
+      "parentTable": "cohort",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/cohort/{uuid}?v=full",
+        "fhir": "/Group/{uuid}"
+      }
+    },
+    "visittype": {
+      "enabled": "false",
+      "title": "Visit Type",
+      "parentTable": "visittype",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/visittype/{uuid}?v=full"
+      }
+    },
+    "person_address": {
+      "enabled": "false",
+      "title": "PersonAddress",
+      "parentTable": "person_address",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/person/{parent-uuid}/address/{uuid}?v=full"
+      }
+    },
+    "person_name": {
+      "enabled": "false",
+      "title": "PersonName",
+      "parentTable": "person_name",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/person/{parent-uuid}/name/{uuid}?v=full"
+      }
+    },
+    "patient_identifier": {
+      "enabled": "false",
+      "title": "PatientIdentifier",
+      "parentTable": "patient_identifier",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/patient/{parent-uuid}/identifier/{uuid}?v=full"
+      }
+    },
+    "person_attribute": {
+      "enabled": "false",
+      "title": "PersonAttribute",
+      "parentTable": "person_attribute",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/person/{parent-uuid}/attribute/{uuid}?v=full"
+      }
+    },
+    "person": {
+      "enabled": "true",
+      "title": "Person",
+      "parentTable": "person",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/person/{uuid}?v=full",
+        "fhir": "/Person/{uuid}"
+      }
+    },
+    "provider": {
+      "enabled": "true",
+      "title": "Provider",
+      "parentTable": "provider",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/provider/{uuid}?v=full",
+        "fhir": "/Provider/{uuid}"
+      }
+    },
+    "user": {
+      "enabled": "false",
+      "title": "User",
+      "parentTable": "user",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/user/{uuid}?v=full"
+      }
+    },
+    "patient": {
+      "enabled": "true",
+      "title": "Patient",
+      "parentTable": "person",
+      "parentForeignKey": "person_id",
+      "childPrimaryKey":"patient_id",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/patient/{uuid}?v=full",
+        "fhir": "/Patient/{uuid}"
+      }
+    },
+    "relationship": {
+      "enabled": "true",
+      "title": "Relationship",
+      "parentTable": "relationship",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/relationship/{uuid}?v=full",
+        "fhir": "/Relationship/{uuid}"
+      }
+    },
+    "drug": {
+      "enabled": "true",
+      "title": "Drug",
+      "parentTable": "drug",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/drug/{uuid}?v=full",
+        "fhir": "/Drug/{uuid}"
+      }
+    },
+    "allergy": {
+      "enabled": "true",
+      "title": "Allergy",
+      "parentTable": "allergy",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/allergy/{uuid}?v=full",
+        "fhir": "/AllergyIntolerance/{uuid}"
+      }
+    },
+    "form":{
+      "enabled": "true",
+      "title": "Form",
+      "parentTable": "form",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/form/{uuid}?v=full"
+      }
+    },
+    "order": {
+      "enabled": "true",
+      "title": "Order",
+      "parentTable": "order",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/order/{uuid}?v=full",
+        "fhir": "/Order/{uuid}"
+      }
+    },
+    "drug_order":{
+      "enabled": "true",
+      "title": "DrugOrder",
+      "parentTable": "drug_order",
+      "parentForeignKey": "order_id",
+      "childPrimaryKey":"order_id",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/drug_order/{uuid}?v=full",
+        "fhir": "/MedicationRequest/{uuid}"
+      }
+    },
+    "test_order": {
+      "enabled": "true",
+      "title": "TestOrder",
+      "parentTable": "test_order",
+      "parentForeignKey": "order_id",
+      "childPrimaryKey":"order_id",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/test_order/{uuid}?v=full",
+        "fhir": "/ProcedureRequest/{uuid}"
+      }
+    },
+    "obs": {
+      "enabled": "true",
+      "title": "Observation",
+      "parentTable": "obs",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/obs/{uuid}?v=full",
+        "fhir": "/Observation/{uuid}"
+      }
+    },
+    "encounter":{
+      "enabled": "true",
+      "title": "Encounter",
+      "parentTable": "encounter",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/encounter/{uuid}?v=full",
+        "fhir": "/Encounter/{uuid}"
+      }
+    },
+    "visit":{
+      "enabled": "false",
+      "title": "Visit",
+      "parentTable": "visit",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/visit/{uuid}?v=full",
+        "fhir": "/Encounter/{uuid}"
+      }
+    },
+    "program":{
+      "enabled": "true",
+      "title": "Program",
+      "parentTable": "program",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/program/{uuid}?v=full",
+        "fhir": "/Program/{uuid}"
+      }
+    },
+    "programenrollment":{
+      "enabled": "true",
+      "title": "Program Enrollment",
+      "parentTable": "programenrollment",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/programenrollment/{uuid}?v=full",
+        "fhir": "/Programenrollment/{uuid}"
+      }
+    },
+    "privilege":{
+      "enabled": "true",
+      "title": "Privilege",
+      "parentTable": "privilege",
+      "linkTemplates": {
+        "rest": "/ws/rest/v1/privilege/{uuid}?v=full"
+      }
+    },
+    "audit_message":{
+      "enabled": "true",
+      "title": "AuditMessage",
+      "parentTable": "audit_message",
+      "linkTemplates": {
+        "rest": "/ws/rest/sync2/messages/{uuid}"
+      }
+    }
+  }
+}
@@ -0,0 +1,62 @@
+# Copyright 2020 Google LLC
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#      http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+# This is a pre-configuration for Docker MySQL to allow BinLog and replication necessary configurations for Debezium to work
+# see ./openmrs-compose.yaml
+# REF: https://github.com/debezium/debezium/blob/master/debezium-connector-mysql/src/test/docker/server-gtids/my.cnf
+
+# For advice on how to change settings please see
+# http://dev.mysql.com/doc/refman/5.7/en/server-configuration-defaults.html
+
+[mysqld]
+#
+# Remove leading # and set to the amount of RAM for the most important data
+# cache in MySQL. Start at 70% of total RAM for dedicated server, else 10%.
+# innodb_buffer_pool_size = 128M
+#
+# Remove leading # to turn on a very important data integrity option: logging
+# changes to the binary log between backups.
+# log_bin
+#
+# Remove leading # to set options mainly useful for reporting servers.
+# The server defaults are faster for transactions and fast SELECTs.
+# Adjust sizes as needed, experiment to find the optimal values.
+# join_buffer_size = 128M
+# sort_buffer_size = 2M
+# read_rnd_buffer_size = 2M
+skip-host-cache
+skip-name-resolve
+#datadir=/var/lib/mysql
+#socket=/var/lib/mysql/mysql.sock
+#secure-file-priv=/var/lib/mysql-files
+user=mysql
+
+# Disabling symbolic-links is recommended to prevent assorted security risks
+symbolic-links=0
+
+#log-error=/var/log/mysqld.log
+#pid-file=/var/run/mysqld/mysqld.pid
+
+# ----------------------------------------------
+# Enable the binlog for replication & CDC
+# ----------------------------------------------
+
+# Enable binary replication log and set the prefix, expiration, and log format.
+# The prefix is arbitrary, expiration can be short for integration tests but would
+# be longer on a production system. Row-level info is required for ingest to work.
+# Server ID is required, but this will vary on production systems
+server-id         = $DB_BINLOG_SERVER_ID
+log_bin           = mysql-bin
+expire_logs_days  = $DB_BINLOG_EXPIRE_DAYS
+binlog_format     = row
@@ -0,0 +1,11 @@
+tls:
+  certificates:
+    - certFile: /etc/certs/live/default/fullchain.pem
+      keyFile: /etc/certs/live/default/privkey.pem
+      stores:
+        - default
+  stores:
+    default:
+      defaultCertificate:
+        certFile: /etc/certs/live/default/fullchain.pem
+        keyFile: /etc/certs/live/default/privkey.pem
@@ -0,0 +1,155 @@
+{
+  "bindAddress": "0.0.0.0",
+  "mongo": {
+    "url": "mongodb://localhost/openhim",
+    "atnaUrl": "mongodb://localhost/openhim",
+    "connectionOptions": {},
+    "openHIMApiReadPreference": "primaryPreferred",
+    "openHIMApiWriteConcern": 1,
+    "openHIMApiReadConcern": "local"
+  },
+  "logger": {
+    "level": "info",
+    "logToDB": true,
+    "capDBLogs": true,
+    "capSize": 10000000
+  },
+  "mongoLogger": {
+    "options": {
+      "w": 0,
+      "useNewUrlParser": true
+    }
+  },
+  "router": {
+    "externalHostname": "uwdigi.org",
+    "httpPort": 5001,
+    "httpsPort": 5000,
+    "timeout": 60000
+  },
+  "bodyCull":{
+    "enabled":true,
+    "pollPeriodMins": 60
+  },
+  "api": {
+    "enabled": true,
+    "protocol": "https",
+    "port": 8080,
+    "authWindowSeconds": 10,
+    "maxBodiesSizeMB": 15,
+    "maxPayloadSizeMB": 50,
+    "truncateSize": 15000,
+    "truncateAppend": "\n[truncated ...]",
+    "authenticationTypes": ["basic", "token"]
+  },
+  "rerun": {
+    "httpPort": 7786,
+    "host": "localhost",
+    "processor": {
+      "enabled": false,
+      "pollPeriodMillis": 2000
+    },
+    "taskTransactionsLength": 50,
+    "activeConcurrentTasks": 3
+  },
+  "tcpAdapter": {
+    "httpReceiver": {
+      "httpPort": 7787,
+      "host": "localhost"
+    }
+  },
+  "polling": {
+    "enabled": false,
+    "pollingPort": 7788,
+    "host": "localhost"
+  },
+  "authentication": {
+    "enableMutualTLSAuthentication": true,
+    "enableBasicAuthentication": true,
+    "enableCustomTokenAuthentication": true,
+    "enableJWTAuthentication": false,
+    "jwt": {
+      "secretOrPublicKey": "",
+      "algorithms": "",
+      "audience": "",
+      "issuer": ""
+    }
+  },
+  "email": {
+    "fromAddress": "address@example.com",
+    "nodemailer": {
+      "service": "Gmail",
+      "auth": {
+        "user": "user@gmail.com",
+        "pass": "password"
+      }
+    }
+  },
+  "smsGateway": {
+    "provider": "clickatell",
+    "config": {
+      "user": "user",
+      "pass": "pass",
+      "apiID": "apiID"
+    }
+  },
+  "alerts": {
+    "enableAlerts": true,
+    "pollPeriodMinutes": 1,
+    "himInstance": "Haiti Health Box OpenHIM",
+    "consoleURL": "http://localhost:9000"
+  },
+  "reports": {
+    "enableReports": false,
+    "dailyReportAt": "0 7 * * *",
+    "weeklyReportAt": "0 7 * * 1",
+    "utcOffset": null
+  },
+  "events": {
+    "enableTSNormalization": true
+  },
+  "newUserExpiry": {
+    "duration": 7,
+    "durationType": "days"
+  },
+  "userPasswordResetExpiry": {
+    "duration": 1,
+    "durationType": "hours"
+  },
+  "auditing": {
+    "servers": {
+      "udp": {
+        "enabled": false,
+        "port": 5050
+      },
+      "tls": {
+        "enabled": false,
+        "port": 5051
+      },
+      "tcp": {
+        "enabled": false,
+        "port": 5052
+      }
+    },
+    "auditEvents": {
+      "interface": "internal",
+      "host": "localhost",
+      "port": 5051,
+      "auditSourceID": "OpenHIM"
+    }
+  },
+  "caching": {
+    "enabled": true,
+    "refreshMillis": 1000
+  },
+  "tlsClientLookup": {
+    "type": "in-chain"
+  },
+  "agenda": {
+    "startupDelay": 500
+  },
+  "certificateManagement": {
+    "watchFSForCert": true,
+    "certPath": "/etc/certs/live/default/fullchain.pem",
+    "keyPath": "/etc/certs/live/default/privkey.pem"
+  }
+}
@@ -0,0 +1,14 @@
+{
+  "version": "1.14.4",
+  "minimumCoreVersion": "5.0.0",
+  "protocol": "https",
+  "host": "52.11.216.56",
+  "hostPath": "",
+  "port": 8090,
+  "title": "Haiti Health Box Console",
+  "footerTitle": "Haiti Health Box Console",
+  "footerPoweredBy": "<a href='http://openhim.org/' target='_blank'>Powered by OpenHIM</a>",
+  "loginBanner": "",
+  "mediatorLastHeartbeatWarningSeconds": 60,
+  "mediatorLastHeartbeatDangerSeconds": 120
+}
@@ -0,0 +1,25 @@
+var http = require("https");
+
+var options = {  
+    host : "0.0.0.0",
+    port : "8080",
+    timeout : 1000,
+    rejectUnauthorized: false
+};
+
+var request = http.request(options, (res) => {  
+    console.log(`STATUS: ${res.statusCode}`);
+    if (res.statusCode == 200 || res.statusCode == 401) {
+        process.exit(0);
+    }
+    else {
+        process.exit(1);
+    }
+});
+
+request.on('error', function(err) {  
+    console.log('ERROR');
+    process.exit(1);
+});
+
+request.end();  
@@ -0,0 +1,85 @@
+{
+  "Users": [
+    {
+      "groups": [
+        "admin"
+      ],
+      "firstname": "Super",
+      "surname": "User",
+      "email": "root@openhim.org",
+      "passwordAlgorithm": "sha512",
+      "passwordHash": "e12ea7a5468925ab2b6d839e5b0566c8d8e68d9dd48241282ec1c448c0b11386b499be64011c88060b241ed5a143fea90992dabb0d91a334daecd96e20156c24",
+      "passwordSalt": "5f49ab7df7fac0fd7860d3b1be95cbf4",
+      "expiry": null,
+      "locked": false,
+      "tokenType": null,
+      "token": null
+    }
+  ],
+  "Clients": [],
+  "Channels": [
+    {
+      "methods": [
+        "GET",
+        "POST",
+        "DELETE",
+        "PUT",
+        "OPTIONS",
+        "HEAD",
+        "TRACE",
+        "CONNECT",
+        "PATCH"
+      ],
+      "type": "http",
+      "allow": [],
+      "whitelist": [],
+      "authType": "public",
+      "matchContentTypes": [],
+      "properties": [],
+      "txViewAcl": [],
+      "txViewFullAcl": [],
+      "txRerunAcl": [],
+      "status": "enabled",
+      "rewriteUrls": false,
+      "addAutoRewriteRules": true,
+      "autoRetryEnabled": false,
+      "autoRetryPeriodMinutes": 60,
+      "routes": [
+        {
+          "type": "http",
+          "status": "enabled",
+          "forwardAuthHeader": false,
+          "name": "Central FHIR server",
+          "secured": false,
+          "host": "52.11.216.56",
+          "port": 8081,
+          "path": "",
+          "pathTransform": "",
+          "primary": true,
+          "username": "",
+          "password": ""
+        }
+      ],
+      "requestBody": true,
+      "responseBody": true,
+      "rewriteUrlsConfig": [],
+      "name": "central fhir server",
+      "description": "Access to the central FHIR server",
+      "pollingSchedule": null,
+      "matchContentRegex": null,
+      "matchContentXpath": null,
+      "matchContentValue": null,
+      "matchContentJson": null,
+      "urlPattern": "^/fhir/.*$",
+      "tcpHost": null,
+      "tcpPort": null,
+      "updatedBy": {
+        "id": "6374bbabba26d10013784480",
+        "name": "Super User"
+      },
+      "alerts": []
+    }
+  ],
+  "Mediators": [],
+  "ContactGroups": []
+}
@@ -0,0 +1,35 @@
+server.ssl.key-store = file:/etc/openelis-global/keystore
+server.ssl.key-store-password = kspass
+server.ssl.key-password = kspass
+server.ssl.trust-store= file:/etc/openelis-global/truststore
+server.ssl.trust-store-password=tspass
+
+#/usr/local/tomcat/webapps/OpenELIS-Global/certs
+encryption.general.password=kspass
+
+spring.datasource.driver=org.postgresql.Driver
+spring.datasource.url= jdbc:postgresql://172.17.0.1:5432/clinlims?currentSchema=clinlims
+spring.datasource.username=clinlims
+spring.datasource.password=MIvfOkcLgzPA
+spring.jpa.hibernate.ddl-auto=update
+
+org.openelisglobal.fhirstore.uri=http://fhir.openelis.org:8080/fhir/
+
+org.openelisglobal.remote.source.uri=http://52.11.216.56:5001/fhir/
+org.openelisglobal.remote.source.updateStatus=true
+org.openelisglobal.remote.source.identifier=Practitioner/f9badd80-ab76-11e2-9e96-0800200c9a66
+org.openelisglobal.task.useBasedOn=true
+
+org.openelisglobal.fhir.subscriber=http://52.11.216.56:5001/fhir/
+org.openelisglobal.fhir.subscriber.resources=Task,Patient,ServiceRequest,DiagnosticReport,Observation,Specimen,Practitioner,Encounter
+
+#org.openelisglobal.facilitylist.fhirstore = http://localhost:4000/fhir/DEFAULT
+# org.openelisglobal.facilitylist.authurl= http://localhost:4000/auth/token
+# org.openelisglobal.facilitylist.username= root@gofr.org
+# org.openelisglobal.facilitylist.password= gofr
+# org.openelisglobal.facilitylist.auth= token
+facilitylist.schedule.fixedRate=864000000
+
+#provider List
+org.openelisglobal.providerlist.fhirstore=http://52.11.216.56:5001/fhir/
+org.openelisglobal.requester.identifier=Practitioner/f9badd80-ab76-11e2-9e96-0800200c9a66
@@ -0,0 +1 @@
+clinlims
@@ -0,0 +1,167 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+  Licensed to the Apache Software Foundation (ASF) under one or more
+  contributor license agreements.  See the NOTICE file distributed with
+  this work for additional information regarding copyright ownership.
+  The ASF licenses this file to You under the Apache License, Version 2.0
+  (the "License"); you may not use this file except in compliance with
+  the License.  You may obtain a copy of the License at
+
+      http://www.apache.org/licenses/LICENSE-2.0
+
+  Unless required by applicable law or agreed to in writing, software
+  distributed under the License is distributed on an "AS IS" BASIS,
+  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+  See the License for the specific language governing permissions and
+  limitations under the License.
+-->
+<!-- Note:  A "Server" is not itself a "Container", so you may not
+     define subcomponents such as "Valves" at this level.
+     Documentation at /docs/config/server.html
+ -->
+<Server port="-1" shutdown="SHUTDOWN">
+  <Listener className="org.apache.catalina.startup.VersionLoggerListener" />
+  <!-- Security listener. Documentation at /docs/config/listeners.html
+  <Listener className="org.apache.catalina.security.SecurityListener" />
+  -->
+  <!--APR library loader. Documentation at /docs/apr.html -->
+  <!--<Listener className="org.apache.catalina.core.AprLifecycleListener" SSLEngine="on" />-->
+  <!-- Prevent memory leaks due to use of particular java/javax APIs-->
+  <Listener className="org.apache.catalina.core.JreMemoryLeakPreventionListener" />
+  <Listener className="org.apache.catalina.mbeans.GlobalResourcesLifecycleListener" />
+  <Listener className="org.apache.catalina.core.ThreadLocalLeakPreventionListener" />
+
+  <!-- Global JNDI resources
+       Documentation at /docs/jndi-resources-howto.html
+  -->
+  <GlobalNamingResources>
+    <!-- Editable user database that can also be used by
+         UserDatabaseRealm to authenticate users
+    -->
+    <Resource name="UserDatabase" auth="Container"
+              type="org.apache.catalina.UserDatabase"
+              description="User database that can be updated and saved"
+              factory="org.apache.catalina.users.MemoryUserDatabaseFactory"
+              pathname="conf/tomcat-users.xml" />
+  </GlobalNamingResources>
+
+  <!-- A "Service" is a collection of one or more "Connectors" that share
+       a single "Container" Note:  A "Service" is not itself a "Container",
+       so you may not define subcomponents such as "Valves" at this level.
+       Documentation at /docs/config/service.html
+   -->
+  <Service name="Catalina">
+
+    <!--The connectors can use a shared executor, you can define one or more named thread pools-->
+    <!--
+    <Executor name="tomcatThreadPool" namePrefix="catalina-exec-"
+        maxThreads="150" minSpareThreads="4"/>
+    -->
+
+
+    <Connector port="8443" minProcessors="5" maxProcessors="75" 
+               enableLookups="true" disableUploadTimeout="true"
+               acceptCount="100" debug="0" scheme="https" secure="true"
+               sslProtocol="TLS" SSLEnabled="true" 
+               keystoreFile="/etc/openelis-global/keystore" keystoreType="PKCS12" keystorePass="kspass"
+               truststoreFile="/etc/openelis-global/truststore" truststoreType="PKCS12" truststorePass="tspass"
+               URIEncoding="UTF-8" />
+               
+    <!-- A "Connector" using the shared thread pool-->
+    <!--
+    <Connector executor="tomcatThreadPool"
+               port="8080" protocol="HTTP/1.1"
+               connectionTimeout="20000"
+               redirectPort="8443" />
+    -->
+    <!-- Define a SSL/TLS HTTP/1.1 Connector on port 8443
+         This connector uses the NIO implementation. The default
+         SSLImplementation will depend on the presence of the APR/native
+         library and the useOpenSSL attribute of the
+         AprLifecycleListener.
+         Either JSSE or OpenSSL style configuration may be used regardless of
+         the SSLImplementation selected. JSSE style configuration is used below.
+    -->
+    <!--
+    <Connector port="8443" protocol="org.apache.coyote.http11.Http11NioProtocol"
+               maxThreads="150" SSLEnabled="true">
+        <SSLHostConfig>
+            <Certificate certificateKeystoreFile="conf/localhost-rsa.jks"
+                         type="RSA" />
+        </SSLHostConfig>
+    </Connector>
+    -->
+    <!-- Define a SSL/TLS HTTP/1.1 Connector on port 8443 with HTTP/2
+         This connector uses the APR/native implementation which always uses
+         OpenSSL for TLS.
+         Either JSSE or OpenSSL style configuration may be used. OpenSSL style
+         configuration is used below.
+    -->
+    <!--
+    <Connector port="8443" protocol="org.apache.coyote.http11.Http11AprProtocol"
+               maxThreads="150" SSLEnabled="true" >
+        <UpgradeProtocol className="org.apache.coyote.http2.Http2Protocol" />
+        <SSLHostConfig>
+            <Certificate certificateKeyFile="conf/localhost-rsa-key.pem"
+                         certificateFile="conf/localhost-rsa-cert.pem"
+                         certificateChainFile="conf/localhost-rsa-chain.pem"
+                         type="RSA" />
+        </SSLHostConfig>
+    </Connector>
+    -->
+
+    <!-- Define an AJP 1.3 Connector on port 8009 -->
+    <!-- 
+    <Connector port="8009" protocol="AJP/1.3" redirectPort="8443" />
+    -->
+
+
+    <!-- An Engine represents the entry point (within Catalina) that processes
+         every request.  The Engine implementation for Tomcat stand alone
+         analyzes the HTTP headers included with the request, and passes them
+         on to the appropriate Host (virtual host).
+         Documentation at /docs/config/engine.html -->
+
+    <!-- You should set jvmRoute to support load-balancing via AJP ie :
+    <Engine name="Catalina" defaultHost="localhost" jvmRoute="jvm1">
+    -->
+    <Engine name="Catalina" defaultHost="localhost">
+
+      <!--For clustering, please take a look at documentation at:
+          /docs/cluster-howto.html  (simple how to)
+          /docs/config/cluster.html (reference documentation) -->
+      <!--
+      <Cluster className="org.apache.catalina.ha.tcp.SimpleTcpCluster"/>
+      -->
+
+      <!-- Use the LockOutRealm to prevent attempts to guess user passwords
+           via a brute-force attack -->
+<!--       <Realm className="org.apache.catalina.realm.LockOutRealm"> -->
+        <!-- This Realm uses the UserDatabase configured in the global JNDI
+             resources under the key "UserDatabase".  Any edits
+             that are performed against this UserDatabase are immediately
+             available for use by the Realm.  -->
+<!--         <Realm className="org.apache.catalina.realm.UserDatabaseRealm" -->
+<!--                resourceName="UserDatabase"/> -->
+<!--       </Realm> -->
+
+      <Host name="localhost"  appBase="webapps"
+            unpackWARs="true" autoDeploy="true">
+            
+        <!-- SingleSignOn valve, share authentication between web applications
+             Documentation at: /docs/config/valve.html -->
+        <!--
+        <Valve className="org.apache.catalina.authenticator.SingleSignOn" />
+        -->
+
+        <!-- Access log processes all example.
+             Documentation at: /docs/config/valve.html
+             Note: The pattern used is equivalent to using pattern="common" -->
+<!--         <Valve className="org.apache.catalina.valves.AccessLogValve" directory="logs" -->
+<!--                prefix="localhost_access_log" suffix=".txt" -->
+<!--                pattern="%h %l %u %t &quot;%r&quot; %s %b" /> -->
+
+      </Host>
+    </Engine>
+  </Service>
+</Server>
Author	SHA1	Message	Date
Piotr Mankowski	4f8cfe86c9	Server updates	2023-07-12 16:04:09 +00:00
Piotr Mankowski	fb91d5dd90	First pass at config variable consolidation in .env Fixes	2022-11-08 01:34:22 +00:00
Piotr Mankowski	7def1d9dda	Merge pull request #1 from I-TECH-UW/pmanko-patch-openelis Testing of single-command setup	2022-10-17 14:11:01 -07:00
Piotr Mankowski	5b392ded8a	CI fix	2022-09-30 15:32:12 -07:00
Piotr Mankowski	e8fdec42ff	CI fix	2022-09-30 15:08:56 -07:00
Piotr Mankowski	650ce61800	CI fix	2022-09-30 14:54:54 -07:00
Piotr Mankowski	401338f63c	CI and setup updates	2022-09-30 14:52:05 -07:00
Piotr Mankowski	8740a8590d	Config additions	2022-09-30 13:55:09 -07:00
Piotr Mankowski	8f61cc7544	Readme update	2022-09-30 13:42:34 -07:00
mozzy11	567d61448e	update openelis setup	2022-09-27 21:35:22 +03:00
Piotr Mankowski	c29df81fe8	OpenELIS	2022-09-25 21:46:39 -07:00