Merge branch 'feature/fmp_to_postgresql_t17' of github.com:Haiti-Distributed-Healthcare-System/hdhs into feature/fmp_to_postgresql_t17

This commit is contained in:
abpwrs committed 2020-04-08 16:11:46 -05:00
commit 6977eda693
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# postgres persisted data
pgdata/
<<<<<<< HEAD
=======
.gitsecret/keys/random_seed
!*.secret
db/init/20200305_2357_init_db.sql
db/init/20200309_1938_init_db.sql
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db/seed/test.sql:e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855
db/init/20200305_2357_init_db.sql:197708aa84419fc409a75c164689e58f71d6501b8e7c79f04797909a619838fc
db/init/20200309_1938_init_db.sql:10c62ab73168e76aaa038f480729bad74b804b0272b4a3f1cdde22a2609df43c
db/models/20200305_2357_model.json:a06db3d67a60cd5225ea57c444d3fbfd8fe7efc01cf8eebe0b67ea9275e92570
db/models/20200309_1936_model.json:e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855
db/models/20200309_1938_model.json:a06db3d67a60cd5225ea57c444d3fbfd8fe7efc01cf8eebe0b67ea9275e92570
db/init/20200305_2357_init_db.sql.secret
db/init/20200309_1938_init_db.sql.secret
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#!/usr/bin/env bash
# Author: "hertz"
# Date: 20200310
# ####################
# DESC:
# A script to execute a SQL script inside of postgres docker container
# ####################
# args:
# 1 -- name of container running postgres to execute the script inside of
# 2 -- path to .SQL script to be execute inside of the postgres container
#if [[ $# -ne 1 ]]; then
# echo "Usage: $0 <param-1> <param-2> ..."
# exit
#fi
# script:
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*
!.gitignore
!*.secret
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create schema chi_20200305_2357;
create table chi_20200305_2357.clinics (
pk_clinic_id FLOAT primary key,
clinic_name VARCHAR ,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR
);
create table chi_20200305_2357.patients (
pk_patient_id FLOAT primary key,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR ,
last_name VARCHAR ,
first_name VARCHAR ,
gender VARCHAR ,
face_photo VARCHAR ,
birthdate VARCHAR ,
phone VARCHAR ,
town VARCHAR ,
unique_name VARCHAR ,
unique_ID_name VARCHAR ,
nickname VARCHAR ,
needs_review VARCHAR ,
notes_modification_status VARCHAR ,
fk_geonameid VARCHAR
);
create table chi_20200305_2357.visits (
pk_visit_id FLOAT primary key,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR ,
fk_patient_id FLOAT ,
fk_clinic_id FLOAT ,
visit_date TIMESTAMP ,
visit_age FLOAT ,
ob_pregnant VARCHAR ,
ob_last_menstrual_period VARCHAR ,
bp_systolic_blood_pressure FLOAT ,
bp_diastolic_blood_pressure FLOAT ,
bp_mean_arterial_pressure FLOAT ,
temp_in_fahrenheit FLOAT ,
pulse_rate FLOAT ,
weight_in_lbs FLOAT ,
height_in_inches FLOAT ,
glasses_given VARCHAR ,
sunglasses_given VARCHAR ,
dx_surgical_candidate VARCHAR ,
surgical_comments VARCHAR ,
visit_age_unit VARCHAR ,
chief_complaint VARCHAR ,
history_of_present_illness VARCHAR ,
visit_age_years FLOAT ,
exam_comments VARCHAR ,
tests_comments VARCHAR ,
tests_blood_sugar_result FLOAT ,
tests_pregnancy_result VARCHAR ,
tests_urine_glucose_result VARCHAR ,
tests_urine_protein_result VARCHAR ,
tests_urine_leukocytes_result VARCHAR ,
tests_urine_nitrites_result VARCHAR ,
ob_gravida FLOAT ,
ob_para FLOAT ,
ob_abortus FLOAT ,
ob_history VARCHAR ,
ob_wants_planning VARCHAR ,
albendazole_given VARCHAR ,
first_visit VARCHAR ,
known_med_allergies VARCHAR ,
meds_currently_taken VARCHAR ,
tests_pregnancy_given VARCHAR ,
tests_blood_sugar_given VARCHAR ,
tests_eye_exam_given VARCHAR ,
tests_urine_analysis_given VARCHAR ,
dx_asthma VARCHAR ,
dx_allergies VARCHAR ,
dx_anemia VARCHAR ,
dx_malnutrition VARCHAR ,
dx_diabetes VARCHAR ,
dx_pterygium VARCHAR ,
dx_cataract VARCHAR ,
dx_dry_eye VARCHAR ,
dx_conjunctivitis VARCHAR ,
dx_fever VARCHAR ,
dx_possible_malaria VARCHAR ,
dx_filariasis VARCHAR ,
dx_gastritis VARCHAR ,
dx_gerd VARCHAR ,
dx_gastroenteritis VARCHAR ,
dx_dysentery VARCHAR ,
dx_possible_cholera VARCHAR ,
dx_headache VARCHAR ,
dx_hernia VARCHAR ,
dx_hernia_type VARCHAR ,
dx_hypertension VARCHAR ,
dx_stroke VARCHAR ,
dx_angina VARCHAR ,
dx_chf VARCHAR ,
dx_musculoskeletal_pain VARCHAR ,
dx_otitis VARCHAR ,
dx_otitis_ear VARCHAR ,
dx_pneumonia VARCHAR ,
dx_sinusitis VARCHAR ,
dx_uri VARCHAR ,
dx_pregnant VARCHAR ,
dx_pregnant_weeks FLOAT ,
dx_atopic_derm VARCHAR ,
dx_fungal VARCHAR ,
dx_scabies VARCHAR ,
dx_impetigo VARCHAR ,
dx_tinea_capitus VARCHAR ,
dx_possible_std VARCHAR ,
dx_possible_tb VARCHAR ,
dx_vaginitis_candidal VARCHAR ,
dx_vaginitis_trich VARCHAR ,
dx_vaginitis_bv VARCHAR ,
dx_other VARCHAR ,
dx_other_text VARCHAR ,
tx_multivitamin VARCHAR ,
tx_pain_acetaminophen VARCHAR ,
tx_gi_omeprazole VARCHAR ,
tx_gi_pepto_bismol VARCHAR ,
tx_gi_cimetidine VARCHAR ,
tx_gi_tums VARCHAR ,
tx_gi_ors VARCHAR ,
tx_infections_albendazole VARCHAR ,
tx_infections_amoxicillin VARCHAR ,
tx_infections_azithromycin VARCHAR ,
tx_infections_bactrim VARCHAR ,
tx_infections_cipro VARCHAR ,
tx_infections_doxycycline VARCHAR ,
tx_infections_flagyl VARCHAR ,
tx_infections_fluconazole VARCHAR ,
tx_infections_griseofulvin VARCHAR ,
tx_infections_ivermectin VARCHAR ,
tx_infections_keflex VARCHAR ,
tx_infections_rocephin VARCHAR ,
tx_cardiac_amlodipine VARCHAR ,
tx_cardiac_aspirin VARCHAR ,
tx_cardiac_atenolol VARCHAR ,
tx_cardiac_hctz VARCHAR ,
tx_cardiac_lasix VARCHAR ,
tx_cardiac_enalapril VARCHAR ,
tx_topical_clotrimazole VARCHAR ,
tx_topical_hydrocortisone VARCHAR ,
tx_topical_silvadine VARCHAR ,
tx_topical_permethirine VARCHAR ,
tx_im_dexamethasone VARCHAR ,
tx_im_lasix VARCHAR ,
tx_misc_albuterol VARCHAR ,
tx_misc_benadryl VARCHAR ,
tx_misc_ferrous_sulfate VARCHAR ,
tx_misc_metformin VARCHAR ,
tx_misc_prednisolone VARCHAR ,
tx_misc_other VARCHAR ,
tx_misc_other_text VARCHAR ,
tx_comments VARCHAR ,
dx_uti VARCHAR ,
tx_multivitamin_varieties VARCHAR ,
tx_pain_acetaminophen_varieties VARCHAR ,
tx_infections_amoxicillin_varieties VARCHAR ,
tx_pain_ibuprofen VARCHAR ,
dx_comments VARCHAR ,
tx_infections_azithromycin_varieties VARCHAR ,
tx_infections_bactrim_varieties VARCHAR ,
tx_infections_keflex_varieties VARCHAR ,
tx_infections_rocephin_varieties VARCHAR ,
dx_vaginitis_general VARCHAR ,
dx_needs_to_see_dentist VARCHAR ,
dx_needs_to_see_eye_doctor VARCHAR ,
dx_healthy VARCHAR ,
provider VARCHAR ,
tx_saw_dentist VARCHAR ,
tx_saw_eye_doctor VARCHAR ,
tx_outside_referral VARCHAR ,
tx_outside_referral_text VARCHAR ,
tx_gi_zinc VARCHAR ,
tx_cardiac_methyldopa VARCHAR ,
tx_infections_augmentin VARCHAR ,
tx_infections_chloroquine VARCHAR ,
tx_infections_griseofuvin_varieties VARCHAR ,
tx_infections_nitrofurantoin VARCHAR ,
tx_topical_double_antibiotic VARCHAR ,
tx_misc_fluoxetine VARCHAR ,
tx_misc_ocp VARCHAR ,
tx_misc_phenytoin VARCHAR ,
dx_possible_parasites VARCHAR ,
tx_misc_iud VARCHAR ,
tests_id_test_given VARCHAR ,
tests_id_chlamydia_result VARCHAR ,
tests_id_hiv_result VARCHAR ,
tests_id_syphilis_result VARCHAR ,
tests_id_gonorrhea_result VARCHAR ,
tests_eye_exam_right_sphere VARCHAR ,
tests_eye_exam_right_cylinder VARCHAR ,
tests_eye_exam_right_axis VARCHAR ,
tests_eye_exam_right_bifocal VARCHAR ,
tests_eye_exam_left_sphere VARCHAR ,
tests_eye_exam_left_cylinder VARCHAR ,
tests_eye_exam_left_axis VARCHAR ,
tests_eye_exam_left_bifocal VARCHAR ,
tx_pain_ibuprofen_varieties VARCHAR ,
tx_misc_benadryl_varieties VARCHAR ,
tests_id_tb_result VARCHAR ,
tests_id_confirm_hiv_cd4 VARCHAR ,
tests_id_confirm_hiv_result VARCHAR ,
tests_id_confirm_hiv_arvt VARCHAR ,
tests_id_confirm_hiv_enrolled VARCHAR ,
tests_id_confirm_hiv_problems VARCHAR ,
tests_id_confirm_tb_result VARCHAR ,
tests_id_confirm_tb_comments VARCHAR ,
tests_id_confirm_hiv_enrolled_at VARCHAR ,
dx_depression VARCHAR ,
clinic_trip VARCHAR ,
tx_chw_referral VARCHAR ,
tx_misc_depo VARCHAR ,
tx_misc_paroxetine VARCHAR ,
tx_misc_keppra VARCHAR ,
dx_totalcount FLOAT ,
tx_totalcount FLOAT ,
tx_given_glasses VARCHAR ,
tx_misc_labetolol VARCHAR ,
tx_misc_carbamazepine VARCHAR ,
tx_misc_terazosin VARCHAR ,
tx_gi_ranitidine VARCHAR ,
tx_cardiac_lisinopril VARCHAR ,
tx_topical_triple_antibiotic VARCHAR ,
tx_misc_prednisone VARCHAR ,
clinic VARCHAR ,
notes_modification_status VARCHAR
);
create table chi_20200305_2357.diagnoses (
pk_diagnosis_id FLOAT primary key,
diagnosis_name VARCHAR ,
pk_diagnosis_key VARCHAR ,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR
);
create table chi_20200305_2357.diagnoses_made (
pk_diagnoses_made FLOAT primary key,
fk_visit_id FLOAT ,
fk_diagnosis_key VARCHAR ,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR
);
create table chi_20200305_2357.meds (
pk_med_id FLOAT primary key,
med_name VARCHAR ,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR ,
pk_med_key VARCHAR ,
med_type VARCHAR
);
create table chi_20200305_2357.meds_dispensed (
pk_meds_dispensed FLOAT primary key,
fk_visit_id FLOAT ,
fk_med_key VARCHAR ,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR ,
dispensed_total FLOAT ,
med_dosage VARCHAR
);
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create schema chi_20200309_1938;
create table chi_20200309_1938.clinics (
pk_clinic_id FLOAT primary key,
clinic_name VARCHAR ,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR
);
create table chi_20200309_1938.patients (
pk_patient_id FLOAT primary key,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR ,
last_name VARCHAR ,
first_name VARCHAR ,
gender VARCHAR ,
face_photo VARCHAR ,
birthdate VARCHAR ,
phone VARCHAR ,
town VARCHAR ,
unique_name VARCHAR ,
unique_ID_name VARCHAR ,
nickname VARCHAR ,
needs_review VARCHAR ,
notes_modification_status VARCHAR ,
fk_geonameid VARCHAR
);
create table chi_20200309_1938.visits (
pk_visit_id FLOAT primary key,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR ,
fk_patient_id FLOAT ,
fk_clinic_id FLOAT ,
visit_date TIMESTAMP ,
visit_age FLOAT ,
ob_pregnant VARCHAR ,
ob_last_menstrual_period VARCHAR ,
bp_systolic_blood_pressure FLOAT ,
bp_diastolic_blood_pressure FLOAT ,
bp_mean_arterial_pressure FLOAT ,
temp_in_fahrenheit FLOAT ,
pulse_rate FLOAT ,
weight_in_lbs FLOAT ,
height_in_inches FLOAT ,
glasses_given VARCHAR ,
sunglasses_given VARCHAR ,
dx_surgical_candidate VARCHAR ,
surgical_comments VARCHAR ,
visit_age_unit VARCHAR ,
chief_complaint VARCHAR ,
history_of_present_illness VARCHAR ,
visit_age_years FLOAT ,
exam_comments VARCHAR ,
tests_comments VARCHAR ,
tests_blood_sugar_result FLOAT ,
tests_pregnancy_result VARCHAR ,
tests_urine_glucose_result VARCHAR ,
tests_urine_protein_result VARCHAR ,
tests_urine_leukocytes_result VARCHAR ,
tests_urine_nitrites_result VARCHAR ,
ob_gravida FLOAT ,
ob_para FLOAT ,
ob_abortus FLOAT ,
ob_history VARCHAR ,
ob_wants_planning VARCHAR ,
albendazole_given VARCHAR ,
first_visit VARCHAR ,
known_med_allergies VARCHAR ,
meds_currently_taken VARCHAR ,
tests_pregnancy_given VARCHAR ,
tests_blood_sugar_given VARCHAR ,
tests_eye_exam_given VARCHAR ,
tests_urine_analysis_given VARCHAR ,
dx_asthma VARCHAR ,
dx_allergies VARCHAR ,
dx_anemia VARCHAR ,
dx_malnutrition VARCHAR ,
dx_diabetes VARCHAR ,
dx_pterygium VARCHAR ,
dx_cataract VARCHAR ,
dx_dry_eye VARCHAR ,
dx_conjunctivitis VARCHAR ,
dx_fever VARCHAR ,
dx_possible_malaria VARCHAR ,
dx_filariasis VARCHAR ,
dx_gastritis VARCHAR ,
dx_gerd VARCHAR ,
dx_gastroenteritis VARCHAR ,
dx_dysentery VARCHAR ,
dx_possible_cholera VARCHAR ,
dx_headache VARCHAR ,
dx_hernia VARCHAR ,
dx_hernia_type VARCHAR ,
dx_hypertension VARCHAR ,
dx_stroke VARCHAR ,
dx_angina VARCHAR ,
dx_chf VARCHAR ,
dx_musculoskeletal_pain VARCHAR ,
dx_otitis VARCHAR ,
dx_otitis_ear VARCHAR ,
dx_pneumonia VARCHAR ,
dx_sinusitis VARCHAR ,
dx_uri VARCHAR ,
dx_pregnant VARCHAR ,
dx_pregnant_weeks FLOAT ,
dx_atopic_derm VARCHAR ,
dx_fungal VARCHAR ,
dx_scabies VARCHAR ,
dx_impetigo VARCHAR ,
dx_tinea_capitus VARCHAR ,
dx_possible_std VARCHAR ,
dx_possible_tb VARCHAR ,
dx_vaginitis_candidal VARCHAR ,
dx_vaginitis_trich VARCHAR ,
dx_vaginitis_bv VARCHAR ,
dx_other VARCHAR ,
dx_other_text VARCHAR ,
tx_multivitamin VARCHAR ,
tx_pain_acetaminophen VARCHAR ,
tx_gi_omeprazole VARCHAR ,
tx_gi_pepto_bismol VARCHAR ,
tx_gi_cimetidine VARCHAR ,
tx_gi_tums VARCHAR ,
tx_gi_ors VARCHAR ,
tx_infections_albendazole VARCHAR ,
tx_infections_amoxicillin VARCHAR ,
tx_infections_azithromycin VARCHAR ,
tx_infections_bactrim VARCHAR ,
tx_infections_cipro VARCHAR ,
tx_infections_doxycycline VARCHAR ,
tx_infections_flagyl VARCHAR ,
tx_infections_fluconazole VARCHAR ,
tx_infections_griseofulvin VARCHAR ,
tx_infections_ivermectin VARCHAR ,
tx_infections_keflex VARCHAR ,
tx_infections_rocephin VARCHAR ,
tx_cardiac_amlodipine VARCHAR ,
tx_cardiac_aspirin VARCHAR ,
tx_cardiac_atenolol VARCHAR ,
tx_cardiac_hctz VARCHAR ,
tx_cardiac_lasix VARCHAR ,
tx_cardiac_enalapril VARCHAR ,
tx_topical_clotrimazole VARCHAR ,
tx_topical_hydrocortisone VARCHAR ,
tx_topical_silvadine VARCHAR ,
tx_topical_permethirine VARCHAR ,
tx_im_dexamethasone VARCHAR ,
tx_im_lasix VARCHAR ,
tx_misc_albuterol VARCHAR ,
tx_misc_benadryl VARCHAR ,
tx_misc_ferrous_sulfate VARCHAR ,
tx_misc_metformin VARCHAR ,
tx_misc_prednisolone VARCHAR ,
tx_misc_other VARCHAR ,
tx_misc_other_text VARCHAR ,
tx_comments VARCHAR ,
dx_uti VARCHAR ,
tx_multivitamin_varieties VARCHAR ,
tx_pain_acetaminophen_varieties VARCHAR ,
tx_infections_amoxicillin_varieties VARCHAR ,
tx_pain_ibuprofen VARCHAR ,
dx_comments VARCHAR ,
tx_infections_azithromycin_varieties VARCHAR ,
tx_infections_bactrim_varieties VARCHAR ,
tx_infections_keflex_varieties VARCHAR ,
tx_infections_rocephin_varieties VARCHAR ,
dx_vaginitis_general VARCHAR ,
dx_needs_to_see_dentist VARCHAR ,
dx_needs_to_see_eye_doctor VARCHAR ,
dx_healthy VARCHAR ,
provider VARCHAR ,
tx_saw_dentist VARCHAR ,
tx_saw_eye_doctor VARCHAR ,
tx_outside_referral VARCHAR ,
tx_outside_referral_text VARCHAR ,
tx_gi_zinc VARCHAR ,
tx_cardiac_methyldopa VARCHAR ,
tx_infections_augmentin VARCHAR ,
tx_infections_chloroquine VARCHAR ,
tx_infections_griseofuvin_varieties VARCHAR ,
tx_infections_nitrofurantoin VARCHAR ,
tx_topical_double_antibiotic VARCHAR ,
tx_misc_fluoxetine VARCHAR ,
tx_misc_ocp VARCHAR ,
tx_misc_phenytoin VARCHAR ,
dx_possible_parasites VARCHAR ,
tx_misc_iud VARCHAR ,
tests_id_test_given VARCHAR ,
tests_id_chlamydia_result VARCHAR ,
tests_id_hiv_result VARCHAR ,
tests_id_syphilis_result VARCHAR ,
tests_id_gonorrhea_result VARCHAR ,
tests_eye_exam_right_sphere VARCHAR ,
tests_eye_exam_right_cylinder VARCHAR ,
tests_eye_exam_right_axis VARCHAR ,
tests_eye_exam_right_bifocal VARCHAR ,
tests_eye_exam_left_sphere VARCHAR ,
tests_eye_exam_left_cylinder VARCHAR ,
tests_eye_exam_left_axis VARCHAR ,
tests_eye_exam_left_bifocal VARCHAR ,
tx_pain_ibuprofen_varieties VARCHAR ,
tx_misc_benadryl_varieties VARCHAR ,
tests_id_tb_result VARCHAR ,
tests_id_confirm_hiv_cd4 VARCHAR ,
tests_id_confirm_hiv_result VARCHAR ,
tests_id_confirm_hiv_arvt VARCHAR ,
tests_id_confirm_hiv_enrolled VARCHAR ,
tests_id_confirm_hiv_problems VARCHAR ,
tests_id_confirm_tb_result VARCHAR ,
tests_id_confirm_tb_comments VARCHAR ,
tests_id_confirm_hiv_enrolled_at VARCHAR ,
dx_depression VARCHAR ,
clinic_trip VARCHAR ,
tx_chw_referral VARCHAR ,
tx_misc_depo VARCHAR ,
tx_misc_paroxetine VARCHAR ,
tx_misc_keppra VARCHAR ,
dx_totalcount FLOAT ,
tx_totalcount FLOAT ,
tx_given_glasses VARCHAR ,
tx_misc_labetolol VARCHAR ,
tx_misc_carbamazepine VARCHAR ,
tx_misc_terazosin VARCHAR ,
tx_gi_ranitidine VARCHAR ,
tx_cardiac_lisinopril VARCHAR ,
tx_topical_triple_antibiotic VARCHAR ,
tx_misc_prednisone VARCHAR ,
clinic VARCHAR ,
notes_modification_status VARCHAR
);
create table chi_20200309_1938.diagnoses (
pk_diagnosis_id FLOAT primary key,
diagnosis_name VARCHAR ,
pk_diagnosis_key VARCHAR ,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR
);
create table chi_20200309_1938.diagnoses_made (
pk_diagnoses_made FLOAT primary key,
fk_visit_id FLOAT ,
fk_diagnosis_key VARCHAR ,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR
);
create table chi_20200309_1938.meds (
pk_med_id FLOAT primary key,
med_name VARCHAR ,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR ,
pk_med_key VARCHAR ,
med_type VARCHAR
);
create table chi_20200309_1938.meds_dispensed (
pk_meds_dispensed FLOAT primary key,
fk_visit_id FLOAT ,
fk_med_key VARCHAR ,
creation_date TIMESTAMP ,
creation_acct VARCHAR ,
modified_date TIMESTAMP ,
modified_acct VARCHAR ,
dispensed_total FLOAT ,
med_dosage VARCHAR
);
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*
!.gitignore
!*.secret
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*
!.gitignore
!.gitignore
!*.secret
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